ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20j13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507218.1| PREDICTED Oryza sativa (japonica cultivar-group... 416 e-113
2ref|XM_482157.1| Oryza sativa (japonica cultivar-group), mRNA 416 e-113
3dbj|AK119576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 416 e-113
4dbj|AK073889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 416 e-113
5gb|AY109156.1| Zea mays PCO079096 mRNA sequence 198 2e-47
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
7dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
8dbj|AK064461.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
9emb|AJ966348.1| Hordeum vulgare subsp. vulgare mRNA for putative... 48 0.042
10emb|AJ966347.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 48 0.042
11ref|NM_180120.1| Arabidopsis thaliana binding / transporter AT2G... 46 0.16
12ref|NM_201969.1| Arabidopsis thaliana binding AT2G46320 transcri... 46 0.16
13ref|NM_180121.1| Arabidopsis thaliana binding AT2G46320 transcri... 46 0.16
14gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C10 ma... 46 0.16
15gb|AC005397.3| Arabidopsis thaliana chromosome 2 clone T3F17 map... 46 0.16
16gb|AY078922.1| Arabidopsis thaliana At2g46320/F11C10.1 mRNA, com... 46 0.16
17gb|AY950587.1| Solea solea clone Sos(AC)3 microsatellite sequence 46 0.16
18emb|BX819432.1|CNS0A9ZO Arabidopsis thaliana Full-length cDNA Co... 46 0.16
19dbj|AK117170.1| Arabidopsis thaliana At2g46320 mRNA for unknown ... 46 0.16
20ref|NM_188535.1| Oryza sativa (japonica cultivar-group), predic... 44 0.65
21emb|AL138810.10| Human DNA sequence from clone RP1-179L10 on chr... 44 0.65
22emb|AJ298105.1|HSA298105 Homo sapiens PDX1 gene for lipoyl-conta... 44 0.65
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.65
24dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.65
25dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.65
26ref|NM_007936.3| Mus musculus Eph receptor A4 (Epha4), mRNA 42 2.6
27gb|BC052164.1| Mus musculus Eph receptor A4, mRNA (cDNA clone MG... 42 2.6
28emb|X65138.1|MMSEK M.musculus mRNA for tyrosine kinase 42 2.6
29gb|BC004782.1| Mus musculus Eph receptor A4, mRNA (cDNA clone MG... 42 2.6
30gb|AC125478.14| Medicago truncatula clone mth2-31i19, complete s... 42 2.6
31dbj|AK132203.1| Mus musculus 10 days embryo whole body cDNA, RIK... 42 2.6
32dbj|AK147698.1| Mus musculus cDNA, RIKEN full-length enriched li... 42 2.6
33gb|DP000004.1| Lemur catta target 1 genomic scaffold 42 2.6
34gb|S57168.1| Sek=Eph-related receptor protein tyrosine kinase [m... 42 2.6
35dbj|AK028509.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 42 2.6
36gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence 42 2.6
37emb|AL929555.20| Mouse DNA sequence from clone RP24-427F7 on chr... 42 2.6
38gb|AC116730.7| Mus musculus chromosome 1, clone RP23-346J11, com... 42 2.6
39emb|AL606982.21| Mouse DNA sequence from clone RP23-354C15 on ch... 42 2.6 
>ref|XM_507218.1| PREDICTED Oryza sativa (japonica cultivar-group), P0434E03.16-1 mRNA
          Length = 1790

 Score =  416 bits (210), Expect = e-113
 Identities = 363/413 (87%), Gaps = 1/413 (0%)
 Strand = Plus / Minus

                                                                        
Query: 329  aaatcctggtcatgacatgttcctttggtgaagagcatacttgacgacctcgtaaaagga 388
            ||||| ||||||||| |||| |||||| |||||||||||||| || |||||||| || ||
Sbjct: 1396 aaatcttggtcatgatatgtgcctttgatgaagagcatacttcacaacctcgtagaaaga 1337

                                                                        
Query: 389  aatgacaataccaactgatggtccagcacgagcgacgcgtggaccaacaccagtgaacaa 448
            |||||| || ||||||||||| ||||| || || || |||||||||||||| ||||||||
Sbjct: 1336 aatgacgattccaactgatgggccagctcgtgctacacgtggaccaacaccggtgaacaa 1277

                                                                        
Query: 449  accttttggaccttcagacctcaatatatcaactaatgtttgcctcgtggtcattctcat 508
             |||||   |||| |||| ||| | |||||| ||||||||||||| ||||||||||||||
Sbjct: 1276 gcctttcatacctccagagctccaaatatcagctaatgtttgccttgtggtcattctcat 1217

                                                                        
Query: 509  tgccttctgggcatccttctcaatctgtctccttgtcttggcaacatcaagagggcatgt 568
            |||||| || | ||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 1216 tgccttttgcgtatccttctctatttgtctccttgtcttagcaacatctagagggcatgt 1157

                                                                        
Query: 569  aacaccagcagcaagactacctgctacaaagccagcagcaaagttcgctcccaacacact 628
            | |||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||
Sbjct: 1156 agcaccagcagcaagactacctgctacaaagccagctgcaaagtttgcacccagcacact 1097

                                                                        
Query: 629  agctgcgtcaccttcctctgcaacaagaccaagcagctttcttcgaatcggctncagcgt 688
            |||||| |||||||| ||| | || | |||||||||||||||||||||||||| ||| ||
Sbjct: 1096 agctgcatcaccttcttctccgacgataccaagcagctttcttcgaatcggctccagtgt 1037

                                                                 
Query: 689  tgaccagcatatagcagagaatggaacatcccgagccaagctgtgcccccaca 741
            ||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||
Sbjct: 1036 tgaccagcatatagcagagaaaggaacatcccgag-caagttgtgcacccaca 985



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 61   tgtcaatgctacatcttccactaca 85
            ||||| |||||||||||||||||||
Sbjct: 1734 tgtcagtgctacatcttccactaca 1710
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>ref|XM_482157.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1734

 Score =  416 bits (210), Expect = e-113
 Identities = 363/413 (87%), Gaps = 1/413 (0%)
 Strand = Plus / Minus

                                                                        
Query: 329  aaatcctggtcatgacatgttcctttggtgaagagcatacttgacgacctcgtaaaagga 388
            ||||| ||||||||| |||| |||||| |||||||||||||| || |||||||| || ||
Sbjct: 1431 aaatcttggtcatgatatgtgcctttgatgaagagcatacttcacaacctcgtagaaaga 1372

                                                                        
Query: 389  aatgacaataccaactgatggtccagcacgagcgacgcgtggaccaacaccagtgaacaa 448
            |||||| || ||||||||||| ||||| || || || |||||||||||||| ||||||||
Sbjct: 1371 aatgacgattccaactgatgggccagctcgtgctacacgtggaccaacaccggtgaacaa 1312

                                                                        
Query: 449  accttttggaccttcagacctcaatatatcaactaatgtttgcctcgtggtcattctcat 508
             |||||   |||| |||| ||| | |||||| ||||||||||||| ||||||||||||||
Sbjct: 1311 gcctttcatacctccagagctccaaatatcagctaatgtttgccttgtggtcattctcat 1252

                                                                        
Query: 509  tgccttctgggcatccttctcaatctgtctccttgtcttggcaacatcaagagggcatgt 568
            |||||| || | ||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 1251 tgccttttgcgtatccttctctatttgtctccttgtcttagcaacatctagagggcatgt 1192

                                                                        
Query: 569  aacaccagcagcaagactacctgctacaaagccagcagcaaagttcgctcccaacacact 628
            | |||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||
Sbjct: 1191 agcaccagcagcaagactacctgctacaaagccagctgcaaagtttgcacccagcacact 1132

                                                                        
Query: 629  agctgcgtcaccttcctctgcaacaagaccaagcagctttcttcgaatcggctncagcgt 688
            |||||| |||||||| ||| | || | |||||||||||||||||||||||||| ||| ||
Sbjct: 1131 agctgcatcaccttcttctccgacgataccaagcagctttcttcgaatcggctccagtgt 1072

                                                                 
Query: 689  tgaccagcatatagcagagaatggaacatcccgagccaagctgtgcccccaca 741
            ||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||
Sbjct: 1071 tgaccagcatatagcagagaaaggaacatcccgag-caagttgtgcacccaca 1020



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 61   tgtcaatgctacatcttccactaca 85
            ||||| |||||||||||||||||||
Sbjct: 1678 tgtcagtgctacatcttccactaca 1654
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>dbj|AK119576.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B05, full
            insert sequence
          Length = 1734

 Score =  416 bits (210), Expect = e-113
 Identities = 363/413 (87%), Gaps = 1/413 (0%)
 Strand = Plus / Minus

                                                                        
Query: 329  aaatcctggtcatgacatgttcctttggtgaagagcatacttgacgacctcgtaaaagga 388
            ||||| ||||||||| |||| |||||| |||||||||||||| || |||||||| || ||
Sbjct: 1431 aaatcttggtcatgatatgtgcctttgatgaagagcatacttcacaacctcgtagaaaga 1372

                                                                        
Query: 389  aatgacaataccaactgatggtccagcacgagcgacgcgtggaccaacaccagtgaacaa 448
            |||||| || ||||||||||| ||||| || || || |||||||||||||| ||||||||
Sbjct: 1371 aatgacgattccaactgatgggccagctcgtgctacacgtggaccaacaccggtgaacaa 1312

                                                                        
Query: 449  accttttggaccttcagacctcaatatatcaactaatgtttgcctcgtggtcattctcat 508
             |||||   |||| |||| ||| | |||||| ||||||||||||| ||||||||||||||
Sbjct: 1311 gcctttcatacctccagagctccaaatatcagctaatgtttgccttgtggtcattctcat 1252

                                                                        
Query: 509  tgccttctgggcatccttctcaatctgtctccttgtcttggcaacatcaagagggcatgt 568
            |||||| || | ||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 1251 tgccttttgcgtatccttctctatttgtctccttgtcttagcaacatctagagggcatgt 1192

                                                                        
Query: 569  aacaccagcagcaagactacctgctacaaagccagcagcaaagttcgctcccaacacact 628
            | |||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||
Sbjct: 1191 agcaccagcagcaagactacctgctacaaagccagctgcaaagtttgcacccagcacact 1132

                                                                        
Query: 629  agctgcgtcaccttcctctgcaacaagaccaagcagctttcttcgaatcggctncagcgt 688
            |||||| |||||||| ||| | || | |||||||||||||||||||||||||| ||| ||
Sbjct: 1131 agctgcatcaccttcttctccgacgataccaagcagctttcttcgaatcggctccagtgt 1072

                                                                 
Query: 689  tgaccagcatatagcagagaatggaacatcccgagccaagctgtgcccccaca 741
            ||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||
Sbjct: 1071 tgaccagcatatagcagagaaaggaacatcccgag-caagttgtgcacccaca 1020



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 61   tgtcaatgctacatcttccactaca 85
            ||||| |||||||||||||||||||
Sbjct: 1678 tgtcagtgctacatcttccactaca 1654
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>dbj|AK073889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075G13, full
            insert sequence
          Length = 1790

 Score =  416 bits (210), Expect = e-113
 Identities = 363/413 (87%), Gaps = 1/413 (0%)
 Strand = Plus / Minus

                                                                        
Query: 329  aaatcctggtcatgacatgttcctttggtgaagagcatacttgacgacctcgtaaaagga 388
            ||||| ||||||||| |||| |||||| |||||||||||||| || |||||||| || ||
Sbjct: 1396 aaatcttggtcatgatatgtgcctttgatgaagagcatacttcacaacctcgtagaaaga 1337

                                                                        
Query: 389  aatgacaataccaactgatggtccagcacgagcgacgcgtggaccaacaccagtgaacaa 448
            |||||| || ||||||||||| ||||| || || || |||||||||||||| ||||||||
Sbjct: 1336 aatgacgattccaactgatgggccagctcgtgctacacgtggaccaacaccggtgaacaa 1277

                                                                        
Query: 449  accttttggaccttcagacctcaatatatcaactaatgtttgcctcgtggtcattctcat 508
             |||||   |||| |||| ||| | |||||| ||||||||||||| ||||||||||||||
Sbjct: 1276 gcctttcatacctccagagctccaaatatcagctaatgtttgccttgtggtcattctcat 1217

                                                                        
Query: 509  tgccttctgggcatccttctcaatctgtctccttgtcttggcaacatcaagagggcatgt 568
            |||||| || | ||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct: 1216 tgccttttgcgtatccttctctatttgtctccttgtcttagcaacatctagagggcatgt 1157

                                                                        
Query: 569  aacaccagcagcaagactacctgctacaaagccagcagcaaagttcgctcccaacacact 628
            | |||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||
Sbjct: 1156 agcaccagcagcaagactacctgctacaaagccagctgcaaagtttgcacccagcacact 1097

                                                                        
Query: 629  agctgcgtcaccttcctctgcaacaagaccaagcagctttcttcgaatcggctncagcgt 688
            |||||| |||||||| ||| | || | |||||||||||||||||||||||||| ||| ||
Sbjct: 1096 agctgcatcaccttcttctccgacgataccaagcagctttcttcgaatcggctccagtgt 1037

                                                                 
Query: 689  tgaccagcatatagcagagaatggaacatcccgagccaagctgtgcccccaca 741
            ||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||
Sbjct: 1036 tgaccagcatatagcagagaaaggaacatcccgag-caagttgtgcacccaca 985



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 61   tgtcaatgctacatcttccactaca 85
            ||||| |||||||||||||||||||
Sbjct: 1734 tgtcagtgctacatcttccactaca 1710
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>gb|AY109156.1| Zea mays PCO079096 mRNA sequence
          Length = 582

 Score =  198 bits (100), Expect = 2e-47
 Identities = 208/243 (85%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 482 taatgtttgcctcgtggtcattctcattgccttctgggcatccttctcaatctgtctcct 541
           |||||||||||| || ||||| |||||||||||||  | ||||||||| || ||||||||
Sbjct: 540 taatgtttgccttgtagtcatcctcattgccttctcagtatccttctctatttgtctcct 481

                                                                       
Query: 542 tgtcttggcaacatcaagagggcatgtaacaccagcagcaagactacctgctacaaagcc 601
           ||| || |||||||| |||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 480 tgtttttgcaacatccagagggcatgtagcaccagcagcaagactgcatgctacaaaacc 421

                                                                       
Query: 602 agcagcaaagttcgctcccaacacactagctgcgtcaccttcctctgcaacaagaccaag 661
           ||||||||| ||| ||||||| |||||| |||| |  ||||| ||| |||||| ||||||
Sbjct: 420 agcagcaaaattcactcccaatacactacctgcattgccttcttctccaacaaaaccaag 361

                                                                       
Query: 662 cagctttcttcgaatcggctncagcgttgaccagcatatagcagagaatggaacatcccg 721
            || |||||| | || ||||  || ||||||||||||||||||||||| |||||||| ||
Sbjct: 360 tagttttctt-gcataggctcaagagttgaccagcatatagcagagaaaggaacatctcg 302

              
Query: 722 agc 724
           |||
Sbjct: 301 agc 299
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  182 bits (92), Expect = 1e-42
 Identities = 131/144 (90%)
 Strand = Plus / Minus

                                                                            
Query: 534      tgtctccttgtcttggcaacatcaagagggcatgtaacaccagcagcaagactacctgct 593
                |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 18248213 tgtctccttgtcttagcaacatctagagggcatgtagcaccagcagcaagactacctgct 18248154

                                                                            
Query: 594      acaaagccagcagcaaagttcgctcccaacacactagctgcgtcaccttcctctgcaaca 653
                ||||||||||| |||||||| || |||| |||||||||||| |||||||| ||| | || 
Sbjct: 18248153 acaaagccagctgcaaagtttgcacccagcacactagctgcatcaccttcttctccgacg 18248094

                                        
Query: 654      agaccaagcagctttcttcgaatc 677
                | ||||||||||||||||||||||
Sbjct: 18248093 ataccaagcagctttcttcgaatc 18248070



 Score =  115 bits (58), Expect = 2e-22
 Identities = 109/126 (86%)
 Strand = Plus / Minus

                                                                            
Query: 329      aaatcctggtcatgacatgttcctttggtgaagagcatacttgacgacctcgtaaaagga 388
                ||||| ||||||||| |||| |||||| |||||||||||||| || |||||||| || ||
Sbjct: 18249873 aaatcttggtcatgatatgtgcctttgatgaagagcatacttcacaacctcgtagaaaga 18249814

                                                                            
Query: 389      aatgacaataccaactgatggtccagcacgagcgacgcgtggaccaacaccagtgaacaa 448
                |||||| || ||||||||||| ||||| || || || |||||||||||||| ||||||||
Sbjct: 18249813 aatgacgattccaactgatgggccagctcgtgctacacgtggaccaacaccggtgaacaa 18249754

                      
Query: 449      accttt 454
                 |||||
Sbjct: 18249753 gccttt 18249748



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/65 (90%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                            
Query: 677      cggctncagcgttgaccagcatatagcagagaatggaacatcccgagccaagctgtgccc 736
                ||||| ||| ||||||||||||||||||||||| ||||||||||||| |||| ||||| |
Sbjct: 18247951 cggctccagtgttgaccagcatatagcagagaaaggaacatcccgag-caagttgtgcac 18247893

                     
Query: 737      ccaca 741
                |||||
Sbjct: 18247892 ccaca 18247888



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 474      atatcaactaatgtttgcctcgtggtcattctcattgccttctgggcatccttct 528
                |||||| ||||||||||||| |||||||||||||||||||| || | ||||||||
Sbjct: 18248459 atatcagctaatgtttgccttgtggtcattctcattgccttttgcgtatccttct 18248405



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 61       tgtcaatgctacatcttccactaca 85
                ||||| |||||||||||||||||||
Sbjct: 18250211 tgtcagtgctacatcttccactaca 18250187
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>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0434E03
          Length = 142414

 Score =  182 bits (92), Expect = 1e-42
 Identities = 131/144 (90%)
 Strand = Plus / Minus

                                                                         
Query: 534   tgtctccttgtcttggcaacatcaagagggcatgtaacaccagcagcaagactacctgct 593
             |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 70525 tgtctccttgtcttagcaacatctagagggcatgtagcaccagcagcaagactacctgct 70466

                                                                         
Query: 594   acaaagccagcagcaaagttcgctcccaacacactagctgcgtcaccttcctctgcaaca 653
             ||||||||||| |||||||| || |||| |||||||||||| |||||||| ||| | || 
Sbjct: 70465 acaaagccagctgcaaagtttgcacccagcacactagctgcatcaccttcttctccgacg 70406

                                     
Query: 654   agaccaagcagctttcttcgaatc 677
             | ||||||||||||||||||||||
Sbjct: 70405 ataccaagcagctttcttcgaatc 70382



 Score =  115 bits (58), Expect = 2e-22
 Identities = 109/126 (86%)
 Strand = Plus / Minus

                                                                         
Query: 329   aaatcctggtcatgacatgttcctttggtgaagagcatacttgacgacctcgtaaaagga 388
             ||||| ||||||||| |||| |||||| |||||||||||||| || |||||||| || ||
Sbjct: 72185 aaatcttggtcatgatatgtgcctttgatgaagagcatacttcacaacctcgtagaaaga 72126

                                                                         
Query: 389   aatgacaataccaactgatggtccagcacgagcgacgcgtggaccaacaccagtgaacaa 448
             |||||| || ||||||||||| ||||| || || || |||||||||||||| ||||||||
Sbjct: 72125 aatgacgattccaactgatgggccagctcgtgctacacgtggaccaacaccggtgaacaa 72066

                   
Query: 449   accttt 454
              |||||
Sbjct: 72065 gccttt 72060



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/65 (90%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                         
Query: 677   cggctncagcgttgaccagcatatagcagagaatggaacatcccgagccaagctgtgccc 736
             ||||| ||| ||||||||||||||||||||||| ||||||||||||| |||| ||||| |
Sbjct: 70263 cggctccagtgttgaccagcatatagcagagaaaggaacatcccgag-caagttgtgcac 70205

                  
Query: 737   ccaca 741
             |||||
Sbjct: 70204 ccaca 70200



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                    
Query: 474   atatcaactaatgtttgcctcgtggtcattctcattgccttctgggcatccttct 528
             |||||| ||||||||||||| |||||||||||||||||||| || | ||||||||
Sbjct: 70771 atatcagctaatgtttgccttgtggtcattctcattgccttttgcgtatccttct 70717



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 61    tgtcaatgctacatcttccactaca 85
             ||||| |||||||||||||||||||
Sbjct: 72523 tgtcagtgctacatcttccactaca 72499
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>dbj|AK064461.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-G05, full
           insert sequence
          Length = 1390

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 522 tccttctcaatctgtctccttgtcttggcaacatcaagagggcatgtaacaccagcag 579
           |||||||| || ||||| | ||||||||||||||| ||||| || ||| |||||||||
Sbjct: 913 tccttctctatttgtctgcgtgtcttggcaacatcgagaggacaggtagcaccagcag 856
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>emb|AJ966348.1| Hordeum vulgare subsp. vulgare mRNA for putative mitochondrial
            carrier protein (mc1 gene)
          Length = 1532

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 521  atccttctcaatctgtctccttgtcttggcaacatcaagagggcatgt 568
            ||||||||| || ||||| | ||||||||||||||| ||||| |||||
Sbjct: 1032 atccttctctatttgtctgcgtgtcttggcaacatcgagaggacatgt 985
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>emb|AJ966347.1| Hordeum vulgare subsp. vulgare partial mRNA for putative
           mitochondrial carrier protein (mc1 gene)
          Length = 1092

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 521 atccttctcaatctgtctccttgtcttggcaacatcaagagggcatgt 568
           ||||||||| || ||||| | ||||||||||||||| ||||| |||||
Sbjct: 909 atccttctctatttgtctgcgtgtcttggcaacatcgagaggacatgt 862
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>ref|NM_180120.1| Arabidopsis thaliana binding / transporter AT2G46320 transcript
           variant AT2G46320.1 mRNA, complete cds
          Length = 1306

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 690 gaccagcatatagcagagaatggaacatccc 720
           |||||||| || |||||||||||||||||||
Sbjct: 744 gaccagcagattgcagagaatggaacatccc 714
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>ref|NM_201969.1| Arabidopsis thaliana binding AT2G46320 transcript variant
           AT2G46320.3 mRNA, complete cds
          Length = 1710

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 690 gaccagcatatagcagagaatggaacatccc 720
           |||||||| || |||||||||||||||||||
Sbjct: 887 gaccagcagattgcagagaatggaacatccc 857
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>ref|NM_180121.1| Arabidopsis thaliana binding AT2G46320 transcript variant
           AT2G46320.2 mRNA, complete cds
          Length = 1494

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 690 gaccagcatatagcagagaatggaacatccc 720
           |||||||| || |||||||||||||||||||
Sbjct: 932 gaccagcagattgcagagaatggaacatccc 902
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>gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete
            sequence
          Length = 95214

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 690  gaccagcatatagcagagaatggaacatccc 720
            |||||||| || |||||||||||||||||||
Sbjct: 1075 gaccagcagattgcagagaatggaacatccc 1045
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>gb|AC005397.3| Arabidopsis thaliana chromosome 2 clone T3F17 map CIC02E07, complete
            sequence
          Length = 110149

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 690  gaccagcatatagcagagaatggaacatccc 720
            |||||||| || |||||||||||||||||||
Sbjct: 6199 gaccagcagattgcagagaatggaacatccc 6229
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>gb|AY078922.1| Arabidopsis thaliana At2g46320/F11C10.1 mRNA, complete cds
          Length = 1124

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 690 gaccagcatatagcagagaatggaacatccc 720
           |||||||| || |||||||||||||||||||
Sbjct: 746 gaccagcagattgcagagaatggaacatccc 716
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>gb|AY950587.1| Solea solea clone Sos(AC)3 microsatellite sequence
          Length = 350

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 528 tcaatctgtctccttgtcttggc 550
           |||||||||||||||||||||||
Sbjct: 341 tcaatctgtctccttgtcttggc 319
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>emb|BX819432.1|CNS0A9ZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB77ZC06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1492

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 690 gaccagcatatagcagagaatggaacatccc 720
           |||||||| || |||||||||||||||||||
Sbjct: 886 gaccagcagattgcagagaatggaacatccc 856
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>dbj|AK117170.1| Arabidopsis thaliana At2g46320 mRNA for unknown protein, complete
           cds, clone: RAFL16-71-I10
          Length = 1494

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 690 gaccagcatatagcagagaatggaacatccc 720
           |||||||| || |||||||||||||||||||
Sbjct: 932 gaccagcagattgcagagaatggaacatccc 902
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>ref|NM_188535.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 879

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 542 tgtcttggcaacatcaagagggcatgtaacaccagcag 579
           ||||||||||||||| ||||| || ||| |||||||||
Sbjct: 642 tgtcttggcaacatcgagaggacaggtagcaccagcag 605
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>emb|AL138810.10| Human DNA sequence from clone RP1-179L10 on chromosome 11p12-14.1
             Contains a gene encoding the dihydroxylipoamide
             dehydrogenase-binding protein of pyruvate dehydrogenase
             complex (E3-binding protein), a gene similar to the CGI-29
             protein, a CpG island, ESTs, STSs and GSSs, complete
             sequence
          Length = 128228

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 647   tgcaacaagaccaagcagctttcttc 672
             ||||||||| ||||||||||||||||
Sbjct: 13084 tgcaacaagtccaagcagctttcttc 13059
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>emb|AJ298105.1|HSA298105 Homo sapiens PDX1 gene for lipoyl-containing component X, exons 1-11
          Length = 128228

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 647    tgcaacaagaccaagcagctttcttc 672
              ||||||||| ||||||||||||||||
Sbjct: 115145 tgcaacaagtccaagcagctttcttc 115170
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 542     tgtcttggcaacatcaagagggcatgtaacaccagcag 579
               ||||||||||||||| ||||| || ||| |||||||||
Sbjct: 6838959 tgtcttggcaacatcgagaggacaggtagcaccagcag 6838922
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>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0492F05
          Length = 159242

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 542  tgtcttggcaacatcaagagggcatgtaacaccagcag 579
            ||||||||||||||| ||||| || ||| |||||||||
Sbjct: 6683 tgtcttggcaacatcgagaggacaggtagcaccagcag 6646
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>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0417G05
          Length = 147803

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 542    tgtcttggcaacatcaagagggcatgtaacaccagcag 579
              ||||||||||||||| ||||| || ||| |||||||||
Sbjct: 121020 tgtcttggcaacatcgagaggacaggtagcaccagcag 120983
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>ref|NM_007936.3| Mus musculus Eph receptor A4 (Epha4), mRNA
          Length = 6328

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1731 cctcgtggtcattctcattgc 1751
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>gb|BC052164.1| Mus musculus Eph receptor A4, mRNA (cDNA clone MGC:59362
            IMAGE:6512978), complete cds
          Length = 5567

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1703 cctcgtggtcattctcattgc 1723
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>emb|X65138.1|MMSEK M.musculus mRNA for tyrosine kinase
          Length = 4242

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1731 cctcgtggtcattctcattgc 1751
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>gb|BC004782.1| Mus musculus Eph receptor A4, mRNA (cDNA clone MGC:8084
            IMAGE:3588285), complete cds
          Length = 3544

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1646 cctcgtggtcattctcattgc 1666
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>gb|AC125478.14| Medicago truncatula clone mth2-31i19, complete sequence
          Length = 111256

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   acatgttcctttggtgaagag 363
             |||||||||||||||||||||
Sbjct: 34032 acatgttcctttggtgaagag 34012
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>dbj|AK132203.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:3425404B18 product:Eph receptor
            A4, full insert sequence
          Length = 3468

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1730 cctcgtggtcattctcattgc 1750
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>dbj|AK147698.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1109J03 product:Eph receptor A4, full insert
            sequence
          Length = 6324

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1727 cctcgtggtcattctcattgc 1747
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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 641    ttcctctgcaacaagaccaagcagc 665
              |||||||||||||||| ||||||||
Sbjct: 754116 ttcctctgcaacaagaacaagcagc 754092
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>gb|S57168.1| Sek=Eph-related receptor protein tyrosine kinase [mice, mRNA, 4242
            nt]
          Length = 4242

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1731 cctcgtggtcattctcattgc 1751
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>dbj|AK028509.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4632410M06 product:Eph receptor A4, full
            insert sequence
          Length = 4353

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cctcgtggtcattctcattgc 511
            |||||||||||||||||||||
Sbjct: 1724 cctcgtggtcattctcattgc 1744
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>gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence
          Length = 158703

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 641   ttcctctgcaacaagaccaagcagc 665
             |||||||||||||||| ||||||||
Sbjct: 97552 ttcctctgcaacaagaacaagcagc 97528
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>emb|AL929555.20| Mouse DNA sequence from clone RP24-427F7 on chromosome 2, complete
             sequence
          Length = 155137

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 499   tcattctcattgccttctgggcatc 523
             |||||||||| ||||||||||||||
Sbjct: 87497 tcattctcatggccttctgggcatc 87473
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>gb|AC116730.7| Mus musculus chromosome 1, clone RP23-346J11, complete sequence
          Length = 208503

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 491    cctcgtggtcattctcattgc 511
              |||||||||||||||||||||
Sbjct: 157637 cctcgtggtcattctcattgc 157657
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>emb|AL606982.21| Mouse DNA sequence from clone RP23-354C15 on chromosome 4, complete
              sequence
          Length = 209339

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 433    caacaccagtgaacaaaccttttgg 457
              |||||||||||||||||| ||||||
Sbjct: 135852 caacaccagtgaacaaactttttgg 135876


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,730,752
Number of Sequences: 3902068
Number of extensions: 6730752
Number of successful extensions: 115613
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115480
Number of HSP's gapped (non-prelim): 132
length of query: 741
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 718
effective length of database: 17,143,297,704
effective search space: 12308887751472
effective search space used: 12308887751472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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