ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20j12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 400 e-108
2gb|AY104294.1| Zea mays PCO116917 mRNA sequence 113 5e-22
3ref|XM_462664.1| Oryza sativa (japonica cultivar-group), predic... 109 8e-21
4dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mR... 103 5e-19
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
7emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 48 0.025
8gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP... 46 0.098
9ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.098
10ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.098
11gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.098
12gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.098
13gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.098
14gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.098
15gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.098
16dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds 46 0.098
17gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, com... 44 0.39
18gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.39
19gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.39
20dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.39
21emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chr... 44 0.39
22gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 44 0.39
23gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 6.0
24gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 6.0
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
26gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, com... 40 6.0
27gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete seq... 40 6.0
28gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.0
29emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chro... 40 6.0
30gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, comp... 40 6.0
31emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 6.0
32gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Can... 40 6.0
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 40 6.0
35gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 6.0
36gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, comple... 40 6.0
37emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chr... 40 6.0 
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  400 bits (202), Expect = e-108
 Identities = 393/447 (87%), Gaps = 13/447 (2%)
 Strand = Plus / Minus

                                                                        
Query: 6    tatgaacacgtgttaataggcacaacaatgtagtatg-tatgtactcctattacagtggc 64
            |||||||||||||||||||||||||||||||| | |  || ||||   ||||||||||||
Sbjct: 1367 tatgaacacgtgttaataggcacaacaatgtactgtactaggtacaa-tattacagtggc 1309

                                                                        
Query: 65   aacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-catcgaactgcga 122
            ||||||||||| |||||||||| |||||||||||||| |||||||  | | ||||||| |
Sbjct: 1308 aacagctaaaaattgcctaccc-tattgtacaccctcggttctttttcgtagaactgcaa 1250

                                                                        
Query: 123  cgtagtaactctgtcagaagctattcaaaaccctgttctggcatatcttgatgagtacaa 182
            |||||||| |||||||||||||| |||||| |||| | ||| |||||| ||||||| |||
Sbjct: 1249 cgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatctggatgagtgcaa 1191

                                                                        
Query: 183  aaattacaattccttttcttggcggtgatgcagtgtcggctgnnnnnnnactgaagaatg 242
            || ||||||||| |||||||  |  |||||||||||||||||       |||||||||||
Sbjct: 1190 aagttacaattctttttctttcca-tgatgcagtgtcggctgttt----actgaagaatg 1136

                                                                        
Query: 243  ct--acagtggctggtgacaaggggtggctgaagtccccactcatgctgcctgcagaact 300
            ||  |||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 1135 ctgtacagtggctggtgacaaggggtcgttgaagtccccactcatgctgcctgcagaact 1076

                                                                        
Query: 301  tctcccccgcctctcgccgagtcgtatgggagcgcgctgagcaccttcacccggaacatg 360
            |||||||| |||||||| |||||||| || |||| ||| |||||||||||||||||||||
Sbjct: 1075 tctccccctcctctcgcggagtcgtacggaagcgtgctcagcaccttcacccggaacatg 1016

                                                                        
Query: 361  gccttcttgtctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagttt 420
            |||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct: 1015 gccttcttgtctgagccaaattcgatggcatcggaagggtggaaacgaactgggaagttt 956

                                       
Query: 421  ggaggtaaccggtagcgcctaccttcg 447
            ||||||||||||||||| || ||||||
Sbjct: 955  ggaggtaaccggtagcgtctgccttcg 929
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>gb|AY104294.1| Zea mays PCO116917 mRNA sequence
          Length = 1342

 Score =  113 bits (57), Expect = 5e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                       
Query: 322 tcgtatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaac 381
           ||||||||||||| | | |||||||||||||||||||| |||||||| || |||||||||
Sbjct: 914 tcgtatgggagcgtgttcagcaccttcacccggaacatagccttcttatcggaaccaaac 855

                                                    
Query: 382 tcgatggcatccgaagggtgaaaacgaaccgggaagtttgg 422
           || ||| |||| ||||| || ||||||||||||||||||||
Sbjct: 854 tcaatgacatcggaaggatggaaacgaaccgggaagtttgg 814
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>ref|XM_462664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score =  109 bits (55), Expect = 8e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 325  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 384
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 1916 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 1857

                                                                        
Query: 385  atggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgcctacct 444
            ||||||||||| || || ||||| || |||||||| |||||||  || ||||| ||||||
Sbjct: 1856 atggcatccgagggatggaaacggacagggaagttcggaggtacgcgatagcgtctacct 1797

               
Query: 445  tcg 447
            |||
Sbjct: 1796 tcg 1794
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>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin
            epoxidase, complete cds
          Length = 2345

 Score =  103 bits (52), Expect = 5e-19
 Identities = 107/124 (86%), Gaps = 1/124 (0%)
 Strand = Plus / Minus

                                                                        
Query: 325  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 384
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 2109 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 2050

                                                                        
Query: 385  atggcatccgaagggtgaaaacgaaccgggaagtttggaggta-accggtagcgcctacc 443
            ||||||||||| || || ||||| || |||||||| |||||||  ||| ||||| |||||
Sbjct: 2049 atggcatccgagggatggaaacggacagggaagttcggaggtacgccgatagcgtctacc 1990

                
Query: 444  ttcg 447
            ||||
Sbjct: 1989 ttcg 1986
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                            
Query: 370      tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 429
                |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 22350882 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 22350823

                                  
Query: 430      cggtagcgcctaccttcg 447
                || ||||| |||||||||
Sbjct: 22350822 cgatagcgtctaccttcg 22350805



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 325      tatgggagcgcgctgagcaccttcacccggaacatggcct 364
                |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 22351048 tatgggagcgtgctcagcaccttcacacggaacacggcct 22351009



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 62       ggcaacagctaaaattgcctacccctattg 91
                ||||||||||||||||||||  ||||||||
Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 370    tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 429
              |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 101786 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 101727

                                
Query: 430    cggtagcgcctaccttcg 447
              || ||||| |||||||||
Sbjct: 101726 cgatagcgtctaccttcg 101709



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 325    tatgggagcgcgctgagcaccttcacccggaacatggcct 364
              |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 101952 tatgggagcgtgctcagcaccttcacacggaacacggcct 101913



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 62     ggcaacagctaaaattgcctacccctattg 91
              ||||||||||||||||||||  ||||||||
Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 167    atcttgatgagtacaaaaattacaattc 194
              |||||||||||||||||||| |||||||
Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
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>gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2162

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 1982 gccttcttatctgaaccaaactcgatg 1956
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>ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.1 mRNA,
            complete cds
          Length = 2373

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.2 mRNA,
            complete cds
          Length = 2377

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 2066 gccttcttatctgaaccaaactcgatg 2040
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>gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2297

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 1996 gccttcttatctgaaccaaactcgatg 1970
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>gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2520

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 2209 gccttcttatctgaaccaaactcgatg 2183
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>gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2314

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 2002 gccttcttatctgaaccaaactcgatg 1976
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>gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2178

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 2121 gccttcttatctgaaccaaactcgatg 2095
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>gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase mRNA, complete cds
          Length = 2323

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 2057 gccttcttatctgaaccaaactcgatg 2031
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>dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds
          Length = 2345

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 361  gccttcttgtctgaaccaaactcgatg 387
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence
          Length = 162962

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 181    aaaaattacaattccttttctt 202
              ||||||||||||||||||||||
Sbjct: 132787 aaaaattacaattccttttctt 132766
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>gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) gene, complete cds
          Length = 3605

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 362  ccttcttgtctgaaccaaactcgatg 387
            ||||||| ||||||||||||||||||
Sbjct: 3238 ccttcttatctgaaccaaactcgatg 3213
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>gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase gene, complete cds
          Length = 4807

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 362  ccttcttgtctgaaccaaactcgatg 387
            ||||||| ||||||||||||||||||
Sbjct: 3745 ccttcttatctgaaccaaactcgatg 3720
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>dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10
          Length = 31132

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 362   ccttcttgtctgaaccaaactcgatg 387
             ||||||| ||||||||||||||||||
Sbjct: 26568 ccttcttatctgaaccaaactcgatg 26593
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>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete
              sequence
          Length = 178159

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 181    aaaaattacaattccttttctt 202
              ||||||||||||||||||||||
Sbjct: 128657 aaaaattacaattccttttctt 128636
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>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 27    acaacaatgtagtatgtatgta 48
             ||||||||||||||||||||||
Sbjct: 33467 acaacaatgtagtatgtatgta 33488
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 167    atcttgatgagtacaaaaattacaattc 194
              ||||||||||||| |||||| |||||||
Sbjct: 984508 atcttgatgagtataaaaataacaattc 984535
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     tcttgatgagtacaaaaatt 187
               ||||||||||||||||||||
Sbjct: 1314619 tcttgatgagtacaaaaatt 1314638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 183      aaattacaattccttttctt 202
                ||||||||||||||||||||
Sbjct: 34148352 aaattacaattccttttctt 34148371
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>gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, complete sequence
          Length = 121868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   actgaagaatgctacagtgg 251
             ||||||||||||||||||||
Sbjct: 29954 actgaagaatgctacagtgg 29935
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>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   tacccctattgtacaccctc 100
            ||||||||||||||||||||
Sbjct: 8056 tacccctattgtacaccctc 8075
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     ccttttcttggcggtgatgc 213
               ||||||||||||||||||||
Sbjct: 3710763 ccttttcttggcggtgatgc 3710744
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>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   ggaacatggccttcttgtct 372
             ||||||||||||||||||||
Sbjct: 17183 ggaacatggccttcttgtct 17164
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>gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, complete sequence
          Length = 174617

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   actgaagaatgctacagtgg 251
             ||||||||||||||||||||
Sbjct: 46165 actgaagaatgctacagtgg 46184
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     tcttgatgagtacaaaaatt 187
               ||||||||||||||||||||
Sbjct: 1327540 tcttgatgagtacaaaaatt 1327559
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>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    tgtacaccctcagttctttc 109
             ||||||||||||||||||||
Sbjct: 96594 tgtacaccctcagttctttc 96613
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 183      aaattacaattccttttctt 202
                ||||||||||||||||||||
Sbjct: 34238824 aaattacaattccttttctt 34238843
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>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   tcagaagctattcaaaaccctgtt 159
             ||||||||||||||||| ||||||
Sbjct: 99157 tcagaagctattcaaaagcctgtt 99180
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    aaattacaattccttttctt 202
              ||||||||||||||||||||
Sbjct: 112164 aaattacaattccttttctt 112183
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>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence
          Length = 182101

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tacagtggctggtgacaagg 263
             ||||||||||||||||||||
Sbjct: 63651 tacagtggctggtgacaagg 63632
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>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete
             sequence
          Length = 208695

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   tgagtacaaaaattacaattcctt 197
             |||||||||||||| |||||||||
Sbjct: 69405 tgagtacaaaaattccaattcctt 69382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,977,090
Number of Sequences: 3902068
Number of extensions: 3977090
Number of successful extensions: 65043
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64858
Number of HSP's gapped (non-prelim): 181
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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