ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20j01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450483.1| Oryza sativa (japonica cultivar-group), mRNA 254 3e-64
2gb|AY371050.1| Oryza sativa (japonica cultivar-group) topoisomer... 254 3e-64
3dbj|AK101452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
4emb|AJ582989.1| Oryza sativa (indica cultivar-group) mRNA for pu... 246 7e-62
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
6dbj|AP006528.2| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
7gb|AY111983.1| Zea mays CL7752_1 mRNA sequence 56 1e-04
8emb|BX647989.1|HSM808135 Homo sapiens mRNA; cDNA DKFZp686N2052 (... 46 0.13
9gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 42 2.0
10gb|AC084047.3| Trypanosoma brucei chromosome 6 clone RPCI93-5F5,... 42 2.0
11gb|AC074258.6| Trypanosoma brucei chromosome 6 clone RPCI93-2N9,... 42 2.0
12ref|XM_821792.1| Trypanosoma brucei TREU927 clone RPCI93-5F5 hyp... 42 2.0
13gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, R... 42 2.0
14ref|XM_950146.1| Theileria annulata strain Ankara hypothetical p... 42 2.0
15emb|AL161629.10| Human DNA sequence from clone RP11-406A20 on ch... 42 2.0
16emb|AL603745.16| Mouse DNA sequence from clone RP23-392I13 on ch... 42 2.0
17gb|AC023946.5| Homo sapiens chromosome 11, clone RP11-567I13, co... 42 2.0
18gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, comp... 42 2.0
19gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, com... 42 2.0
20emb|BX088552.1|CNS09S4T Mus musculus chromosome 11 region in the... 42 2.0
21emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the... 42 2.0
22gb|AC161119.3| Mus musculus BAC clone RP23-32J13 from chromosome... 40 7.9
23gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, comp... 40 7.9
24gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosom... 40 7.9
25ref|NM_007698.2| Mus musculus cholinergic receptor, muscarinic 1... 40 7.9
26emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on ch... 40 7.9
27emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on... 40 7.9
28emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chr... 40 7.9
29gb|AC008936.6| Homo sapiens chromosome 5 clone CTD-2309I16, comp... 40 7.9
30dbj|AK081248.1| Mus musculus adult male corpus striatum cDNA, RI... 40 7.9
31gb|AC104623.4| Homo sapiens BAC clone RP11-542H15 from 2, comple... 40 7.9
32dbj|AB055251.1| Macaca fascicularis brain cDNA, clone:QflA-10072... 40 7.9
33gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, comple... 40 7.9
34gb|AC018463.11| Homo sapiens BAC clone RP11-295J19 from 2, compl... 40 7.9
35dbj|AP006297.1| Homo sapiens genomic DNA, chromosome 6 clone:RP1... 40 7.9
36gb|AY490548.1| Zamia muricata RNA polymerase I largest subunit (... 40 7.9
37gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, comp... 40 7.9
38dbj|AP002531.2| Homo sapiens genomic DNA, chromosome 6q21, anti-... 40 7.9
39dbj|AB042235.1| Homo sapiens genomic DNA, chromosome 6q21, clone... 40 7.9 
>ref|XM_450483.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2515

 Score =  254 bits (128), Expect = 3e-64
 Identities = 297/348 (85%), Gaps = 4/348 (1%)
 Strand = Plus / Minus

                                                                        
Query: 233  aatctaaacacgaaagcggggctctggaagtcaacgaacttgtaagatccttcgagcgag 292
            ||||| ||||| ||| | ||||||||||| || |  ||||||||||||||||| || |||
Sbjct: 2164 aatctgaacacaaaaacagggctctggaaatcgataaacttgtaagatccttcaagggag 2105

                                                                        
Query: 293  ttcagatagattgcttcgcggggctcttcgctcacgccgctctg-atggcgtactccagc 351
            || | ||| | |||||| || || || ||||| || || ||||| |||||||||||||  
Sbjct: 2104 tttaaatataatgcttcacgaggttcctcgcttactccactctgcatggcgtactccaat 2045

                                                                        
Query: 352  gccatttcatagtcaacctgttcaacatgctgggttaagcaatctctaaaagtcatttct 411
            ||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||| |||
Sbjct: 2044 gccatttcataatcaacctgttcaacatgttgtgttaagcaatccctaaaggtcatctct 1985

                                                                        
Query: 412  gtcacttcctccgaatttattttctcgaggagctcctcatcttccttgtcaaaccgtggc 471
            ||||| ||||| || |||| |||||| ||||| |||||||||||||| ||| | ||||||
Sbjct: 1984 gtcacctcctcagagtttactttctcaaggagttcctcatcttccttatcataacgtggc 1925

                                                                        
Query: 472  ctcttggggggaggactcgtcttgcaagttctcccagagtctccataattgtccttgcca 531
            ||||| |||||| ||||| || ||||| ||||||||||||||||||||||| ||| || |
Sbjct: 1924 ctctttggggga-gactcatc-tgcaatttctcccagagtctccataattgccctcgcaa 1867

                                                            
Query: 532  catcagggaatgtatttgttcaggttccttttcctgtcctgctgttca 579
            ||||| ||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 1866 catca-ggaatgtatctgtttaggttccttttcctgtcctgccgttca 1820
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>gb|AY371050.1| Oryza sativa (japonica cultivar-group) topoisomerase 6 subunit B-like
            protein mRNA, complete cds
          Length = 2480

 Score =  254 bits (128), Expect = 3e-64
 Identities = 297/348 (85%), Gaps = 4/348 (1%)
 Strand = Plus / Minus

                                                                        
Query: 233  aatctaaacacgaaagcggggctctggaagtcaacgaacttgtaagatccttcgagcgag 292
            ||||| ||||| ||| | ||||||||||| || |  ||||||||||||||||| || |||
Sbjct: 2124 aatctgaacacaaaaacagggctctggaaatcgataaacttgtaagatccttcaagggag 2065

                                                                        
Query: 293  ttcagatagattgcttcgcggggctcttcgctcacgccgctctg-atggcgtactccagc 351
            || | ||| | |||||| || || || ||||| || || ||||| |||||||||||||  
Sbjct: 2064 tttaaatataatgcttcacgaggttcctcgcttactccactctgcatggcgtactccaat 2005

                                                                        
Query: 352  gccatttcatagtcaacctgttcaacatgctgggttaagcaatctctaaaagtcatttct 411
            ||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||| |||
Sbjct: 2004 gccatttcataatcaacctgttcaacatgttgtgttaagcaatccctaaaggtcatctct 1945

                                                                        
Query: 412  gtcacttcctccgaatttattttctcgaggagctcctcatcttccttgtcaaaccgtggc 471
            ||||| ||||| || |||| |||||| ||||| |||||||||||||| ||| | ||||||
Sbjct: 1944 gtcacctcctcagagtttactttctcaaggagttcctcatcttccttatcataacgtggc 1885

                                                                        
Query: 472  ctcttggggggaggactcgtcttgcaagttctcccagagtctccataattgtccttgcca 531
            ||||| |||||| ||||| || ||||| ||||||||||||||||||||||| ||| || |
Sbjct: 1884 ctctttggggga-gactcatc-tgcaatttctcccagagtctccataattgccctcgcaa 1827

                                                            
Query: 532  catcagggaatgtatttgttcaggttccttttcctgtcctgctgttca 579
            ||||| ||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 1826 catca-ggaatgtatctgtttaggttccttttcctgtcctgccgttca 1780
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>dbj|AK101452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039N14, full
            insert sequence
          Length = 2515

 Score =  254 bits (128), Expect = 3e-64
 Identities = 297/348 (85%), Gaps = 4/348 (1%)
 Strand = Plus / Minus

                                                                        
Query: 233  aatctaaacacgaaagcggggctctggaagtcaacgaacttgtaagatccttcgagcgag 292
            ||||| ||||| ||| | ||||||||||| || |  ||||||||||||||||| || |||
Sbjct: 2164 aatctgaacacaaaaacagggctctggaaatcgataaacttgtaagatccttcaagggag 2105

                                                                        
Query: 293  ttcagatagattgcttcgcggggctcttcgctcacgccgctctg-atggcgtactccagc 351
            || | ||| | |||||| || || || ||||| || || ||||| |||||||||||||  
Sbjct: 2104 tttaaatataatgcttcacgaggttcctcgcttactccactctgcatggcgtactccaat 2045

                                                                        
Query: 352  gccatttcatagtcaacctgttcaacatgctgggttaagcaatctctaaaagtcatttct 411
            ||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||| |||
Sbjct: 2044 gccatttcataatcaacctgttcaacatgttgtgttaagcaatccctaaaggtcatctct 1985

                                                                        
Query: 412  gtcacttcctccgaatttattttctcgaggagctcctcatcttccttgtcaaaccgtggc 471
            ||||| ||||| || |||| |||||| ||||| |||||||||||||| ||| | ||||||
Sbjct: 1984 gtcacctcctcagagtttactttctcaaggagttcctcatcttccttatcataacgtggc 1925

                                                                        
Query: 472  ctcttggggggaggactcgtcttgcaagttctcccagagtctccataattgtccttgcca 531
            ||||| |||||| ||||| || ||||| ||||||||||||||||||||||| ||| || |
Sbjct: 1924 ctctttggggga-gactcatc-tgcaatttctcccagagtctccataattgccctcgcaa 1867

                                                            
Query: 532  catcagggaatgtatttgttcaggttccttttcctgtcctgctgttca 579
            ||||| ||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 1866 catca-ggaatgtatctgtttaggttccttttcctgtcctgccgttca 1820
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>emb|AJ582989.1| Oryza sativa (indica cultivar-group) mRNA for putative topoisomerase
            VI subunit B (topo6B gene)
          Length = 2091

 Score =  246 bits (124), Expect = 7e-62
 Identities = 296/348 (85%), Gaps = 4/348 (1%)
 Strand = Plus / Minus

                                                                        
Query: 233  aatctaaacacgaaagcggggctctggaagtcaacgaacttgtaagatccttcgagcgag 292
            ||||| ||||| ||| | ||||||||||| || |  ||||||||||||||||| || |||
Sbjct: 2081 aatctgaacacaaaaacagggctctggaaatcgataaacttgtaagatccttcaagggag 2022

                                                                        
Query: 293  ttcagatagattgcttcgcggggctcttcgctcacgccgctctg-atggcgtactccagc 351
            || | ||| | |||||| || || || ||||| || || ||||| |||||||||||||  
Sbjct: 2021 tttaaatataatgcttcacgaggttcctcgcttactccactctgcatggcgtactccaat 1962

                                                                        
Query: 352  gccatttcatagtcaacctgttcaacatgctgggttaagcaatctctaaaagtcatttct 411
            ||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||| |||
Sbjct: 1961 gccatttcataatcaacctgttcaacatgttgtgttaagcaatccctaaaggtcatctct 1902

                                                                        
Query: 412  gtcacttcctccgaatttattttctcgaggagctcctcatcttccttgtcaaaccgtggc 471
            ||||| ||||| ||||||| |||||| ||||| |||||||||||||| ||| |  |||||
Sbjct: 1901 gtcacctcctcagaatttactttctcaaggagttcctcatcttccttatcataatgtggc 1842

                                                                        
Query: 472  ctcttggggggaggactcgtcttgcaagttctcccagagtctccataattgtccttgcca 531
            ||||| |||||| ||||| || |||||  |||||||||||||||||||||| ||| || |
Sbjct: 1841 ctctttggggga-gactcatc-tgcaatctctcccagagtctccataattgccctcgcaa 1784

                                                            
Query: 532  catcagggaatgtatttgttcaggttccttttcctgtcctgctgttca 579
            ||||| ||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 1783 catca-ggaatgtatctgtttaggttccttttcctgtcctgccgttca 1737
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  151 bits (76), Expect = 3e-33
 Identities = 150/172 (87%), Gaps = 2/172 (1%)
 Strand = Plus / Minus

                                                                           
Query: 367     acctgttcaacatgctgggttaagcaatctctaaaagtcatttctgtcacttcctccgaa 426
               |||||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| || 
Sbjct: 5827980 acctgttcaacatgttgtgttaagcaatccctaaaggtcatctctgtcacctcctcagag 5827921

                                                                           
Query: 427     tttattttctcgaggagctcctcatcttccttgtcaaaccgtggcctcttggggggagga 486
               |||| |||||| ||||| |||||||||||||| ||| | ||||||||||| |||||| ||
Sbjct: 5827920 tttactttctcaaggagttcctcatcttccttatcataacgtggcctctttggggga-ga 5827862

                                                                   
Query: 487     ctcgtcttgcaagttctcccagagtctccataattgtccttgccacatcagg 538
               ||| || ||||| ||||||||||||||||||||||| ||| || ||||||||
Sbjct: 5827861 ctcatc-tgcaatttctcccagagtctccataattgccctcgcaacatcagg 5827811



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 115/140 (82%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                           
Query: 233     aatctaaacacgaaagcggggctctggaagtcaacgaacttgtaagatccttcgagcgag 292
               ||||| ||||| ||| | ||||||||||| || |  ||||||||||||||||| || |||
Sbjct: 5828481 aatctgaacacaaaaacagggctctggaaatcgataaacttgtaagatccttcaagggag 5828422

                                                                           
Query: 293     ttcagatagattgcttcgcggggctcttcgctcacgccgctctg-atggcgtactccagc 351
               || | ||| | |||||| || || || ||||| || || ||||| |||||||||||||  
Sbjct: 5828421 tttaaatataatgcttcacgaggttcctcgcttactccactctgcatggcgtactccaat 5828362

                                   
Query: 352     gccatttcatagtcaacctg 371
               ||||||||||| ||||||||
Sbjct: 5828361 gccatttcataatcaacctg 5828342



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 548     tgttcaggttccttttcctgtcctgctgttca 579
               |||| ||||||||||||||||||||| |||||
Sbjct: 5827368 tgtttaggttccttttcctgtcctgccgttca 5827337
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>dbj|AP006528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0651G05
          Length = 153258

 Score =  151 bits (76), Expect = 3e-33
 Identities = 150/172 (87%), Gaps = 2/172 (1%)
 Strand = Plus / Minus

                                                                         
Query: 367   acctgttcaacatgctgggttaagcaatctctaaaagtcatttctgtcacttcctccgaa 426
             |||||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| || 
Sbjct: 19467 acctgttcaacatgttgtgttaagcaatccctaaaggtcatctctgtcacctcctcagag 19408

                                                                         
Query: 427   tttattttctcgaggagctcctcatcttccttgtcaaaccgtggcctcttggggggagga 486
             |||| |||||| ||||| |||||||||||||| ||| | ||||||||||| |||||| ||
Sbjct: 19407 tttactttctcaaggagttcctcatcttccttatcataacgtggcctctttggggga-ga 19349

                                                                 
Query: 487   ctcgtcttgcaagttctcccagagtctccataattgtccttgccacatcagg 538
             ||| || ||||| ||||||||||||||||||||||| ||| || ||||||||
Sbjct: 19348 ctcatc-tgcaatttctcccagagtctccataattgccctcgcaacatcagg 19298



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 115/140 (82%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                         
Query: 233   aatctaaacacgaaagcggggctctggaagtcaacgaacttgtaagatccttcgagcgag 292
             ||||| ||||| ||| | ||||||||||| || |  ||||||||||||||||| || |||
Sbjct: 19968 aatctgaacacaaaaacagggctctggaaatcgataaacttgtaagatccttcaagggag 19909

                                                                         
Query: 293   ttcagatagattgcttcgcggggctcttcgctcacgccgctctg-atggcgtactccagc 351
             || | ||| | |||||| || || || ||||| || || ||||| |||||||||||||  
Sbjct: 19908 tttaaatataatgcttcacgaggttcctcgcttactccactctgcatggcgtactccaat 19849

                                 
Query: 352   gccatttcatagtcaacctg 371
             ||||||||||| ||||||||
Sbjct: 19848 gccatttcataatcaacctg 19829



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 548   tgttcaggttccttttcctgtcctgctgttca 579
             |||| ||||||||||||||||||||| |||||
Sbjct: 18855 tgtttaggttccttttcctgtcctgccgttca 18824
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>gb|AY111983.1| Zea mays CL7752_1 mRNA sequence
          Length = 453

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 269 aacttgtaagatccttcgagcgagttcagatagattgcttcgcggggctcttcgct 324
           ||||| ||||||||||| || ||||||| ||| |||||||| |||||||| |||||
Sbjct: 59  aacttataagatccttcaagtgagttcaaatatattgcttctcggggctcctcgct 4
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>emb|BX647989.1|HSM808135 Homo sapiens mRNA; cDNA DKFZp686N2052 (from clone DKFZp686N2052)
          Length = 3700

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 27   ccctcaattacaacttcactaaa 49
            |||||||||||||||||||||||
Sbjct: 1015 ccctcaattacaacttcactaaa 993
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    caacaatggggaaaatgtaaa 137
              |||||||||||||||||||||
Sbjct: 940722 caacaatggggaaaatgtaaa 940702
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>gb|AC084047.3| Trypanosoma brucei chromosome 6 clone RPCI93-5F5, complete sequence
          Length = 152595

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    caacaatggggaaaatgtaaa 137
              |||||||||||||||||||||
Sbjct: 150447 caacaatggggaaaatgtaaa 150427
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>gb|AC074258.6| Trypanosoma brucei chromosome 6 clone RPCI93-2N9, complete sequence
          Length = 148326

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    caacaatggggaaaatgtaaa 137
              |||||||||||||||||||||
Sbjct: 145631 caacaatggggaaaatgtaaa 145651
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>ref|XM_821792.1| Trypanosoma brucei TREU927 clone RPCI93-5F5 hypothetical protein
             (Tb927.6.3150) partial mRNA
          Length = 13566

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   caacaatggggaaaatgtaaa 137
             |||||||||||||||||||||
Sbjct: 13243 caacaatggggaaaatgtaaa 13223
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>gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-439E2, Complete
             Sequence, complete sequence
          Length = 211996

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 499   gttctcccagagtctccataa 519
             |||||||||||||||||||||
Sbjct: 78181 gttctcccagagtctccataa 78161
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>ref|XM_950146.1| Theileria annulata strain Ankara hypothetical protein (TA05145)
            partial mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 359  catagtcaacctgttcaacat 379
            |||||||||||||||||||||
Sbjct: 1212 catagtcaacctgttcaacat 1232
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>emb|AL161629.10| Human DNA sequence from clone RP11-406A20 on chromosome 9q21.33-22.2
             Contains two novel genes and a  interleukin 6 receptor
             (IL6R) pseudogene, complete sequence
          Length = 160341

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 403   gtcatttctgtcacttcctcc 423
             |||||||||||||||||||||
Sbjct: 92116 gtcatttctgtcacttcctcc 92096
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>emb|AL603745.16| Mouse DNA sequence from clone RP23-392I13 on chromosome 11 Contains the
             5' end of the Rad51l3 gene for RAD51-like 3 (S.
             cerevisiae), two novel genes, the gene for a novel WD40
             repeat containing protein, the Cmya4 gene for
             cardiomyopathy associated 4, a novel gene,  the Slfn5,
             Slfn9, Slfn8 and Slfn2 genes for schlafen 5, 9, 8 and 2, a
             SET domain-containing protein 8 (Set8) pseudogene, a
             ribosomal protein L12 (Rpl12) pseudogene, a schlafen
             (Slfn) pseudogene and a CpG island, complete sequence
          Length = 198392

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 499   gttctcccagagtctccataa 519
             |||||||||||||||||||||
Sbjct: 17565 gttctcccagagtctccataa 17585
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>gb|AC023946.5| Homo sapiens chromosome 11, clone RP11-567I13, complete sequence
          Length = 187380

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 444   ctcctcatcttccttgtcaaa 464
             |||||||||||||||||||||
Sbjct: 77879 ctcctcatcttccttgtcaaa 77899
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>gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, complete sequence
          Length = 175529

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    ggaaaatgtaaaaacaactgt 146
              |||||||||||||||||||||
Sbjct: 118223 ggaaaatgtaaaaacaactgt 118243
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>gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, complete sequence
          Length = 212779

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 444    ctcctcatcttccttgtcaaa 464
              |||||||||||||||||||||
Sbjct: 188814 ctcctcatcttccttgtcaaa 188834
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>emb|BX088552.1|CNS09S4T Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone CITB-248O2 of library Caltech CITB-BAC from
             chromosome 11 of Mus musculus (mouse)
          Length = 190320

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 499   gttctcccagagtctccataa 519
             |||||||||||||||||||||
Sbjct: 24736 gttctcccagagtctccataa 24756
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>emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 4B7 of library Caltech CITB-BAC from chromosome 11
             of Mus musculus (mouse)
          Length = 132348

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 499   gttctcccagagtctccataa 519
             |||||||||||||||||||||
Sbjct: 58165 gttctcccagagtctccataa 58145
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>gb|AC161119.3| Mus musculus BAC clone RP23-32J13 from chromosome 18, complete sequence
          Length = 218697

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    ttctcatgggatgaatctaa 239
              ||||||||||||||||||||
Sbjct: 139559 ttctcatgggatgaatctaa 139540
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>gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, complete sequence
          Length = 242418

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 545    atttgttcaggttccttttc 564
              ||||||||||||||||||||
Sbjct: 143669 atttgttcaggttccttttc 143650
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>gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosome 9, complete sequence
          Length = 169614

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 359   catagtcaacctgttcaacatgctgggt 386
             |||||||| ||||||||||| |||||||
Sbjct: 82362 catagtcagcctgttcaacaggctgggt 82389
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>ref|NM_007698.2| Mus musculus cholinergic receptor, muscarinic 1, CNS (Chrm1), mRNA
          Length = 3816

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 545  atttgttcaggttccttttc 564
            ||||||||||||||||||||
Sbjct: 3147 atttgttcaggttccttttc 3128
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>emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on chromosome 9 Contains the
             5' end of the GPR51 gene for G protein-coupled receptor 51
             (HG20, GABBR2, GPRC3B, GABABR2), the 3' end of a novel
             gene (FLJ36928), a CDC10 cell division cycle 10 homolog
             (S. cerevisiae) (SEPT7) pseudogene and a CpG island,
             complete sequence
          Length = 165358

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tgctctctacactcagctgc 86
             ||||||||||||||||||||
Sbjct: 46105 tgctctctacactcagctgc 46124
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>emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on chromosome 6p24.1-25.3 Contains
              the gene for MD-1,RP105-associated, part of a putative
              novel gene and three putative CpG islands, complete
              sequence
          Length = 193731

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 556    ttccttttcctgtcctgctg 575
              ||||||||||||||||||||
Sbjct: 187305 ttccttttcctgtcctgctg 187286
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>emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chromosome 4, complete
              sequence
          Length = 137493

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    tctcatgggatgaatctaaa 240
              ||||||||||||||||||||
Sbjct: 124150 tctcatgggatgaatctaaa 124131
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>gb|AC008936.6| Homo sapiens chromosome 5 clone CTD-2309I16, complete sequence
          Length = 56515

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ggaaaatgtaaaaacaactg 145
             ||||||||||||||||||||
Sbjct: 25400 ggaaaatgtaaaaacaactg 25419
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>dbj|AK081248.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
            enriched library, clone:C030026C22 product:MUSCARINIC
            ACETYLCHOLINE RECEPTOR M1, full insert sequence
          Length = 3816

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 545  atttgttcaggttccttttc 564
            ||||||||||||||||||||
Sbjct: 3147 atttgttcaggttccttttc 3128
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>gb|AC104623.4| Homo sapiens BAC clone RP11-542H15 from 2, complete sequence
          Length = 102794

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   gacaacaatggggaaaatgt 134
             ||||||||||||||||||||
Sbjct: 70138 gacaacaatggggaaaatgt 70157
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>dbj|AB055251.1| Macaca fascicularis brain cDNA, clone:QflA-10072, similar to human
            threonine synthase-like 1(THNSL1), mRNA, NM_024838
          Length = 2568

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 27   ccctcaattacaacttcactaaaa 50
            |||||||||||| |||||||||||
Sbjct: 1023 ccctcaattacagcttcactaaaa 1000
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>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence
          Length = 173993

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    agaagttacaccctcaatta 36
             ||||||||||||||||||||
Sbjct: 70442 agaagttacaccctcaatta 70423
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>gb|AC018463.11| Homo sapiens BAC clone RP11-295J19 from 2, complete sequence
          Length = 183995

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   ttccatgttaacacattatt 177
             ||||||||||||||||||||
Sbjct: 58238 ttccatgttaacacattatt 58257
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>dbj|AP006297.1| Homo sapiens genomic DNA, chromosome 6 clone:RP11-645B4, complete
              sequence
          Length = 168768

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    acaacaatggggaaaatgta 135
              ||||||||||||||||||||
Sbjct: 124814 acaacaatggggaaaatgta 124833
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>gb|AY490548.1| Zamia muricata RNA polymerase I largest subunit (rpa1) mRNA,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tcatttctgtcacttcctcc 423
           ||||||||||||||||||||
Sbjct: 277 tcatttctgtcacttcctcc 296
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>gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, complete sequence
          Length = 216783

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   ttctcatgggatgaatctaa 239
             ||||||||||||||||||||
Sbjct: 18472 ttctcatgggatgaatctaa 18453
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>dbj|AP002531.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region,
             section 4/4, complete sequence
          Length = 156978

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   acaacaatggggaaaatgta 135
             ||||||||||||||||||||
Sbjct: 12788 acaacaatggggaaaatgta 12807
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>dbj|AB042235.1| Homo sapiens genomic DNA, chromosome 6q21, clone:419N8, complete
             sequence
          Length = 93540

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   acaacaatggggaaaatgta 135
             ||||||||||||||||||||
Sbjct: 28410 acaacaatggggaaaatgta 28429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,902,642
Number of Sequences: 3902068
Number of extensions: 4902642
Number of successful extensions: 96778
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96657
Number of HSP's gapped (non-prelim): 105
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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