ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20i23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPM_PERVI (Q9GZ70) Tropomyosin 32 1.9
2TPM_MYTGA (P91958) Tropomyosin 32 1.9
3FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2) 31 3.3
4TPM_MYTED (Q25457) Tropomyosin 30 5.6
5TPM_HALRU (Q25145) Tropomyosin 30 7.3
6TPM_HALDV (Q9GZ71) Tropomyosin 30 7.3

>TPM_PERVI (Q9GZ70) Tropomyosin|
          Length = 284

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -2

Query: 563 ETSNTEKERSLLVKISELQSRMITLTDELISAKQKHVQLQQELNALY 423
           E   TE ER+    +S+LQ  +  L DEL++ K+K+  +  EL+A +
Sbjct: 236 ENRATEAERT----VSKLQKEVDRLEDELLTEKEKYKAISDELDATF 278



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>TPM_MYTGA (P91958) Tropomyosin|
          Length = 284

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -2

Query: 563 ETSNTEKERSLLVKISELQSRMITLTDELISAKQKHVQLQQELNALY 423
           E   TE ER+    +S+LQ  +  L DEL++ K+K+  +  EL+A +
Sbjct: 236 ENRATEAERT----VSKLQKEVDRLEDELLTEKEKYKAISDELDATF 278



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>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)|
          Length = 694

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 200 HQCVY*FLFSFFFGLIYSIGFWWVI 126
           H C   FL ++FFG+  SI  WWVI
Sbjct: 393 HSCTLVFLLTYFFGMASSI--WWVI 415



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>TPM_MYTED (Q25457) Tropomyosin|
          Length = 284

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 563 ETSNTEKERSLLVKISELQSRMITLTDELISAKQKHVQLQQELNALY 423
           E   TE ER+    +S+L+  +  L DEL++ K+K+  +  EL+A +
Sbjct: 236 ENRATEAERT----VSKLRKEVDRLEDELLTEKEKYKAISDELDATF 278



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>TPM_HALRU (Q25145) Tropomyosin|
          Length = 284

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 563 ETSNTEKERSLLVKISELQSRMITLTDELISAKQKHVQLQQELNALY 423
           E   TE ER+    +S+LQ  +  L DEL++ K+K+  +  EL+  +
Sbjct: 236 ENRATEAERT----VSKLQKEVDRLEDELLAEKEKYKAISDELDQTF 278



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>TPM_HALDV (Q9GZ71) Tropomyosin|
          Length = 284

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 563 ETSNTEKERSLLVKISELQSRMITLTDELISAKQKHVQLQQELNALY 423
           E   TE ER+    +S+LQ  +  L DEL++ K+K+  +  EL+  +
Sbjct: 236 ENRATEAERT----VSKLQKEVDRLEDELLAEKEKYKAISDELDQTF 278


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,756,119
Number of Sequences: 219361
Number of extensions: 1233186
Number of successful extensions: 3183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3179
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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