ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197379.1| Oryza sativa (japonica cultivar-group) putative... 226 7e-56
2dbj|AK100288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 7e-56
3gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 geno... 105 2e-19
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
6gb|AY109879.1| Zea mays CL28036_1 mRNA sequence 98 4e-17
7gb|AY104987.1| Zea mays PCO082616 mRNA sequence 60 9e-06
8ref|NM_187542.1| Oryza sativa (japonica cultivar-group), predic... 50 0.009
9dbj|AK121970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
10gb|AC186394.1| Pan troglodytes chromosome 7 clone CH251-302F10, ... 42 2.1
11gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete se... 42 2.1
12gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, comple... 42 2.1
13gb|AC117476.6| Homo sapiens 3 BAC RP11-726H11 (Roswell Park Canc... 42 2.1
14gb|AC069272.18|AC069272 Homo sapiens chromosome 4 clone RP11-76G... 42 2.1
15emb|AL954297.7| Mouse DNA sequence from clone RP23-53B14 on chro... 42 2.1
16gb|AC103368.7| Mus musculus chromosome 18, clone RP24-131L2, com... 40 8.4
17ref|XM_630974.1| Dictyostelium discoideum hypothetical protein (... 40 8.4
18gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
19gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
20gb|AC183639.2| Pan troglodytes chromosome X clone PTB-24B10 map ... 40 8.4
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.4
22gb|AC118051.7| Mus musculus chromosome 1, clone RP24-430E15, com... 40 8.4
23emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chr... 40 8.4
24emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 i... 40 8.4
25ref|XM_814000.1| Trypanosoma cruzi strain CL Brener zinc finger ... 40 8.4
26gb|AC073278.9| Homo sapiens BAC clone RP11-661L8 from 7, complet... 40 8.4
27gb|AC140551.8| Medicago truncatula clone mth2-80i8, complete seq... 40 8.4
28gb|AC148097.7| Medicago truncatula clone mth2-15a20, complete se... 40 8.4
29emb|AL935184.16| Zebrafish DNA sequence from clone DKEY-30K22 in... 40 8.4
30emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 40 8.4
31emb|AL663049.8| Mouse DNA sequence from clone RP23-198N8 on chro... 40 8.4
32emb|BX649288.14| Zebrafish DNA sequence from clone CH211-205B11 ... 40 8.4
33gb|AC117467.3| Homo sapiens 3 BAC RP11-669C7 (Roswell Park Cance... 40 8.4
34gb|AC123593.1| Genomic sequence for Medicago truncatula, clone M... 40 8.4
35gb|AC025178.8| Homo sapiens chromosome 5 clone CTD-2152M20, comp... 40 8.4
36gb|AC022017.8| Homo sapiens chromosome 10 clone RP11-210G22, com... 40 8.4
37gb|AC093831.3| Homo sapiens BAC clone RP11-401I19 from 4, comple... 40 8.4
38gb|AC019133.8| Homo sapiens BAC clone RP11-577G20 from 4, comple... 40 8.4
39gb|AC023281.13| Homo sapiens 12p BAC RP11-780A5 (Roswell Park Ca... 40 8.4
40gb|AC022103.5| Homo sapiens chromosome 5 clone CTC-254B4, comple... 40 8.4
41dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
42dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
44gb|AC152932.2| Xenopus tropicalis clone ISB1-31M3, complete sequ... 40 8.4
45gb|AC144754.3| Ornithorhynchus anatinus clone OA_Bb-265C11, comp... 40 8.4
46gb|AC097230.3| Sus scrofa clone RP44-254G1, complete sequence 40 8.4
47gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
48gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, compl... 40 8.4
49emb|BX649465.2| Sminthopsis DNA sequence from clone RZPD668-13K2... 40 8.4
50emb|BX088688.6| Zebrafish DNA sequence from clone CH211-278F21 i... 40 8.4
51dbj|AP001317.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.4
52gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
53gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
54emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb... 40 8.4
55emb|Z98304.1|HS54B20 Human DNA sequence from clone RP1-54B20 on ... 40 8.4 
>ref|NM_197379.1| Oryza sativa (japonica cultivar-group) putative Ste20-related protein
            kinase (OSJNBb0018B10.1), mRNA
          Length = 1932

 Score =  226 bits (114), Expect = 7e-56
 Identities = 165/182 (90%)
 Strand = Plus / Minus

                                                                        
Query: 374  atgtttcctcgttgtcctcgtccctaatgtcttctatttcttctcggcagtataacgcat 433
            ||||||| |||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct: 1930 atgtttcttcgttgtcatcatccctaatgtcttctatttcttctcggcagtacaatgcat 1871

                                                                        
Query: 434  taagctcttgctgcaactgaacatgtttttgcttagctgaaatcagttcatcagtcaaag 493
            | | ||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 1870 ttaactcttgctgcaactgtacatgctttagcttagctgcaatcagttcatcagtcaaag 1811

                                                                        
Query: 494  taatcattctagactgcagctctgaaattttaacaagtaatgaccgttctttctcagtat 553
            ||||||||||||| ||||  |||||||||||||||||||| ||||||||||| |||| ||
Sbjct: 1810 taatcattctagattgcaattctgaaattttaacaagtaacgaccgttctttttcagaat 1751

              
Query: 554  ta 555
            ||
Sbjct: 1750 ta 1749
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>dbj|AK100288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075H06, full
            insert sequence
          Length = 2982

 Score =  226 bits (114), Expect = 7e-56
 Identities = 165/182 (90%)
 Strand = Plus / Minus

                                                                        
Query: 374  atgtttcctcgttgtcctcgtccctaatgtcttctatttcttctcggcagtataacgcat 433
            ||||||| |||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct: 2460 atgtttcttcgttgtcatcatccctaatgtcttctatttcttctcggcagtacaatgcat 2401

                                                                        
Query: 434  taagctcttgctgcaactgaacatgtttttgcttagctgaaatcagttcatcagtcaaag 493
            | | ||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 2400 ttaactcttgctgcaactgtacatgctttagcttagctgcaatcagttcatcagtcaaag 2341

                                                                        
Query: 494  taatcattctagactgcagctctgaaattttaacaagtaatgaccgttctttctcagtat 553
            ||||||||||||| ||||  |||||||||||||||||||| ||||||||||| |||| ||
Sbjct: 2340 taatcattctagattgcaattctgaaattttaacaagtaacgaccgttctttttcagaat 2281

              
Query: 554  ta 555
            ||
Sbjct: 2280 ta 2279



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 178  aaaaactaatatacacactgatggcaacaggcca 211
            |||||||||||||||||||||||||| |||||||
Sbjct: 2699 aaaaactaatatacacactgatggcaccaggcca 2666
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>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence,
            complete sequence
          Length = 135789

 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                        
Query: 374  atgtttcctcgttgtcctcgtccctaatgtcttctatttcttctcggcagtataacgcat 433
            ||||||| |||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct: 8046 atgtttcttcgttgtcatcatccctaatgtcttctatttcttctcggcagtacaatgcat 7987

                                 
Query: 434  taagctcttgctgcaactgaa 454
            | | |||||||||||||||||
Sbjct: 7986 ttaactcttgctgcaactgaa 7966



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                              
Query: 454  acatgtttttgcttagctgaaatcagttcatcagtcaaagtaatcattct 503
            ||||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7817 acatgctttagcttagctgcaatcagttcatcagtcaaagtaatcattct 7768



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 178  aaaaactaatatacacactgatggcaacaggcca 211
            |||||||||||||||||||||||||| |||||||
Sbjct: 8285 aaaaactaatatacacactgatggcaccaggcca 8252



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 514  tctgaaattttaacaagtaatgaccgttctttctcagtatta 555
            |||||||||||||||||||| ||||||||||| |||| ||||
Sbjct: 7381 tctgaaattttaacaagtaacgaccgttctttttcagaatta 7340
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                            
Query: 374      atgtttcctcgttgtcctcgtccctaatgtcttctatttcttctcggcagtataacgcat 433
                ||||||| |||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct: 19550855 atgtttcttcgttgtcatcatccctaatgtcttctatttcttctcggcagtacaatgcat 19550796

                                     
Query: 434      taagctcttgctgcaactgaa 454
                | | |||||||||||||||||
Sbjct: 19550795 ttaactcttgctgcaactgaa 19550775



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 454      acatgtttttgcttagctgaaatcagttcatcagtcaaagtaatcattct 503
                ||||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 19550626 acatgctttagcttagctgcaatcagttcatcagtcaaagtaatcattct 19550577



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 178      aaaaactaatatacacactgatggcaacaggcca 211
                |||||||||||||||||||||||||| |||||||
Sbjct: 19551094 aaaaactaatatacacactgatggcaccaggcca 19551061



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 514      tctgaaattttaacaagtaatgaccgttctttctcagtatta 555
                |||||||||||||||||||| ||||||||||| |||| ||||
Sbjct: 19550190 tctgaaattttaacaagtaacgaccgttctttttcagaatta 19550149
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                            
Query: 374      atgtttcctcgttgtcctcgtccctaatgtcttctatttcttctcggcagtataacgcat 433
                ||||||| |||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct: 19562131 atgtttcttcgttgtcatcatccctaatgtcttctatttcttctcggcagtacaatgcat 19562072

                                     
Query: 434      taagctcttgctgcaactgaa 454
                | | |||||||||||||||||
Sbjct: 19562071 ttaactcttgctgcaactgaa 19562051



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 454      acatgtttttgcttagctgaaatcagttcatcagtcaaagtaatcattct 503
                ||||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 19561902 acatgctttagcttagctgcaatcagttcatcagtcaaagtaatcattct 19561853



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 178      aaaaactaatatacacactgatggcaacaggcca 211
                |||||||||||||||||||||||||| |||||||
Sbjct: 19562370 aaaaactaatatacacactgatggcaccaggcca 19562337



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 514      tctgaaattttaacaagtaatgaccgttctttctcagtatta 555
                |||||||||||||||||||| ||||||||||| |||| ||||
Sbjct: 19561466 tctgaaattttaacaagtaacgaccgttctttttcagaatta 19561425
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>gb|AY109879.1| Zea mays CL28036_1 mRNA sequence
          Length = 565

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                       
Query: 373 tatgtttcctcgttgtcctcgtccctaatgtcttctatttcttctcggcagtataacgca 432
           |||||||| ||| | ||||| |||||||| || || |||||||||||| |||| ||||||
Sbjct: 456 tatgtttcttcgatatcctcatccctaatatcctcaatttcttctcggtagtacaacgca 515

                                        
Query: 433 ttaagctcttgctgcaactgaacatgttt 461
           || ||||||||||||||||||||||||||
Sbjct: 516 tttagctcttgctgcaactgaacatgttt 544
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>gb|AY104987.1| Zea mays PCO082616 mRNA sequence
          Length = 823

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 114/142 (80%)
 Strand = Plus / Minus

                                                                       
Query: 409 atttcttctcggcagtataacgcattaagctcttgctgcaactgaacatgtttttgctta 468
           ||||||||| ||||||| |   |||| |||||||  |||| ||||||||||||  |||| 
Sbjct: 536 atttcttcttggcagtagagtacatttagctcttcttgcagctgaacatgtttcagcttt 477

                                                                       
Query: 469 gctgaaatcagttcatcagtcaaagtaatcattctagactgcagctctgaaattttaaca 528
           || | ||| | ||| |||||||||| |||||| ||||| || | |||  |||||||||||
Sbjct: 476 gccgcaattaattcgtcagtcaaagaaatcatcctagattgtaactcaaaaattttaaca 417

                                 
Query: 529 agtaatgaccgttctttctcag 550
           ||||| ||  ||||| ||||||
Sbjct: 416 agtaacgagtgttctctctcag 395
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>ref|NM_187542.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1938

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 475  atcagttcatcagtcaaagtaatcattctagactgcagctctgaaattttaacaagtaat 534
            ||||||||||| || || | |||||||||||| ||||  ||  | ||||| |||||||||
Sbjct: 1841 atcagttcatcggttaatgaaatcattctagattgcaattcaaatattttgacaagtaat 1782

                     
Query: 535  gaccgttct 543
            |||||||||
Sbjct: 1781 gaccgttct 1773
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>dbj|AK121970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108H17, full
            insert sequence
          Length = 2902

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 475  atcagttcatcagtcaaagtaatcattctagactgcagctctgaaattttaacaagtaat 534
            ||||||||||| || || | |||||||||||| ||||  ||  | ||||| |||||||||
Sbjct: 2273 atcagttcatcggttaatgaaatcattctagattgcaattcaaatattttgacaagtaat 2214

                     
Query: 535  gaccgttct 543
            |||||||||
Sbjct: 2213 gaccgttct 2205
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>gb|AC186394.1| Pan troglodytes chromosome 7 clone CH251-302F10, complete sequence
          Length = 183782

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 551    tattagatgtttcaacaccat 571
              |||||||||||||||||||||
Sbjct: 169042 tattagatgtttcaacaccat 169062
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>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence
          Length = 137052

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 396    cctaatgtcttctatttcttc 416
              |||||||||||||||||||||
Sbjct: 132205 cctaatgtcttctatttcttc 132185
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>gb|AC073042.7| Homo sapiens BAC clone CTD-2105K18 from 7, complete sequence
          Length = 182038

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 507   ctgcagctctgaaattttaac 527
             |||||||||||||||||||||
Sbjct: 59982 ctgcagctctgaaattttaac 60002
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>gb|AC117476.6| Homo sapiens 3 BAC RP11-726H11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92001

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 135   ccaaaaacctattgaataaattaaa 159
             |||||||||||||||||||| ||||
Sbjct: 56948 ccaaaaacctattgaataaaataaa 56972
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>gb|AC069272.18|AC069272 Homo sapiens chromosome 4 clone RP11-76G10, complete sequence
          Length = 160359

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     tttattttgcttcttctgcat 28
             |||||||||||||||||||||
Sbjct: 18804 tttattttgcttcttctgcat 18824
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>emb|AL954297.7| Mouse DNA sequence from clone RP23-53B14 on chromosome X, complete
            sequence
          Length = 47163

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 6    tatttattttgcttcttctgcatgc 30
            ||||||||||| |||||||||||||
Sbjct: 5851 tatttattttgtttcttctgcatgc 5875
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>gb|AC103368.7| Mus musculus chromosome 18, clone RP24-131L2, complete sequence
          Length = 160855

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tttatttattttgcttcttc 23
             ||||||||||||||||||||
Sbjct: 57963 tttatttattttgcttcttc 57944
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>ref|XM_630974.1| Dictyostelium discoideum hypothetical protein (DDB0188529), partial
            mRNA
          Length = 5115

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 162  gaaaaagaagctaaataaaaacta 185
            ||||||||||||||| ||||||||
Sbjct: 3700 gaaaaagaagctaaagaaaaacta 3723
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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      caatttatttattttgcttc 20
              ||||||||||||||||||||
Sbjct: 115476 caatttatttattttgcttc 115495
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>gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0040G18, complete sequence
          Length = 172281

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     caatttatttattttgcttc 20
             ||||||||||||||||||||
Sbjct: 78158 caatttatttattttgcttc 78139
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>gb|AC183639.2| Pan troglodytes chromosome X clone PTB-24B10 map human ortholog p11.23,
              complete sequence
          Length = 183185

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 173    taaataaaaactaatatacacact 196
              |||||||||||| |||||||||||
Sbjct: 143814 taaataaaaacttatatacacact 143837
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 520    attttaacaagtaatgaccgttct 543
              ||||| ||||||||||||||||||
Sbjct: 785905 attttgacaagtaatgaccgttct 785882
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>gb|AC118051.7| Mus musculus chromosome 1, clone RP24-430E15, complete sequence
          Length = 180197

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    atgctgcaaaagctaagtgc 339
              ||||||||||||||||||||
Sbjct: 109532 atgctgcaaaagctaagtgc 109513
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>emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chromosome 7, complete
              sequence
          Length = 185507

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      atttatttattttgcttctt 22
              ||||||||||||||||||||
Sbjct: 105516 atttatttattttgcttctt 105497
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>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10,
              complete sequence
          Length = 200648

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    aaaaagaagctaaataaaaa 182
              ||||||||||||||||||||
Sbjct: 129455 aaaaagaagctaaataaaaa 129474
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>ref|XM_814000.1| Trypanosoma cruzi strain CL Brener zinc finger protein
            (Tc00.1047053506941.139) partial mRNA
          Length = 2088

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 12   ttttgcttcttctgcatgctgttc 35
            |||| |||||||||||||||||||
Sbjct: 1980 tttttcttcttctgcatgctgttc 1957
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>gb|AC073278.9| Homo sapiens BAC clone RP11-661L8 from 7, complete sequence
          Length = 200807

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      aatttatttattttgcttct 21
              ||||||||||||||||||||
Sbjct: 119912 aatttatttattttgcttct 119893
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>gb|AC140551.8| Medicago truncatula clone mth2-80i8, complete sequence
          Length = 135244

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttatttattttgcttcttct 24
             ||||||||||||||||||||
Sbjct: 83071 ttatttattttgcttcttct 83090
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>gb|AC148097.7| Medicago truncatula clone mth2-15a20, complete sequence
          Length = 125098

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttatttattttgcttcttct 24
             ||||||||||||||||||||
Sbjct: 82864 ttatttattttgcttcttct 82883
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>emb|AL935184.16| Zebrafish DNA sequence from clone DKEY-30K22 in linkage group 1,
             complete sequence
          Length = 255909

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   cattctagactgcagctctg 517
             ||||||||||||||||||||
Sbjct: 22076 cattctagactgcagctctg 22095
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 540     ttctttctcagtattagatgtttcaaca 567
               ||||| |||||||||| |||||||||||
Sbjct: 2150783 ttcttgctcagtattaaatgtttcaaca 2150756
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>emb|AL663049.8| Mouse DNA sequence from clone RP23-198N8 on chromosome 11 Contains the
              Mor2 gene for soluble malate dehydrogenase, a novel gene, a
              phosphoglycerate mutase (Pgam) pseudogene and a CpG island,
              complete sequence
          Length = 203295

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    acctattgaataaattaaac 160
              ||||||||||||||||||||
Sbjct: 167478 acctattgaataaattaaac 167497
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>emb|BX649288.14| Zebrafish DNA sequence from clone CH211-205B11 in linkage group 3,
             complete sequence
          Length = 145373

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    tattttgcttcttctgcatg 29
             ||||||||||||||||||||
Sbjct: 99972 tattttgcttcttctgcatg 99991
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>gb|AC117467.3| Homo sapiens 3 BAC RP11-669C7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 90000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   ataaaaactaatatacacac 195
             ||||||||||||||||||||
Sbjct: 21668 ataaaaactaatatacacac 21687
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>gb|AC123593.1| Genomic sequence for Medicago truncatula, clone MTABa0052G10, complete
             sequence
          Length = 100769

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   cctaatgtcttctatttctt 415
             ||||||||||||||||||||
Sbjct: 18613 cctaatgtcttctatttctt 18632
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>gb|AC025178.8| Homo sapiens chromosome 5 clone CTD-2152M20, complete sequence
          Length = 134995

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aaaaagaagctaaataaaaa 182
             ||||||||||||||||||||
Sbjct: 39506 aaaaagaagctaaataaaaa 39525
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>gb|AC022017.8| Homo sapiens chromosome 10 clone RP11-210G22, complete sequence
          Length = 180165

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   aaaagaagctaaataaaaac 183
             ||||||||||||||||||||
Sbjct: 32907 aaaagaagctaaataaaaac 32888
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>gb|AC093831.3| Homo sapiens BAC clone RP11-401I19 from 4, complete sequence
          Length = 182116

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 589   ccactttgcatatttcggacttgc 612
             ||||||||||||||| ||||||||
Sbjct: 33735 ccactttgcatattttggacttgc 33758
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>gb|AC019133.8| Homo sapiens BAC clone RP11-577G20 from 4, complete sequence
          Length = 185556

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      atttatttattttgcttcttctgc 26
              ||||||||||| ||||||||||||
Sbjct: 169950 atttatttattctgcttcttctgc 169927
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>gb|AC023281.13| Homo sapiens 12p BAC RP11-780A5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 145410

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    aatttatttattttgcttct 21
            ||||||||||||||||||||
Sbjct: 2693 aatttatttattttgcttct 2674
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>gb|AC022103.5| Homo sapiens chromosome 5 clone CTC-254B4, complete sequence
          Length = 129175

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   aactgaacatgtttttgctt 467
             ||||||||||||||||||||
Sbjct: 34615 aactgaacatgtttttgctt 34634
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 163      aaaaagaagctaaataaaaa 182
                ||||||||||||||||||||
Sbjct: 23105421 aaaaagaagctaaataaaaa 23105402
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       caatttatttattttgcttc 20
               ||||||||||||||||||||
Sbjct: 4572384 caatttatttattttgcttc 4572403



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       caatttatttattttgcttc 20
               ||||||||||||||||||||
Sbjct: 4464113 caatttatttattttgcttc 4464132
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 520    attttaacaagtaatgaccgttct 543
              ||||| ||||||||||||||||||
Sbjct: 785903 attttgacaagtaatgaccgttct 785880
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>gb|AC152932.2| Xenopus tropicalis clone ISB1-31M3, complete sequence
          Length = 78419

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    atttatttattttgcttctt 22
            ||||||||||||||||||||
Sbjct: 9321 atttatttattttgcttctt 9340
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>gb|AC144754.3| Ornithorhynchus anatinus clone OA_Bb-265C11, complete sequence
          Length = 68227

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 7    atttattttgcttcttctgcatgc 30
            |||||||||||||||||| |||||
Sbjct: 9005 atttattttgcttcttcttcatgc 8982
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>gb|AC097230.3| Sus scrofa clone RP44-254G1, complete sequence
          Length = 162289

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      atttatttattttgcttctt 22
              ||||||||||||||||||||
Sbjct: 135696 atttatttattttgcttctt 135715
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090O10, complete sequence
          Length = 162132

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   attttaacaagtaatgaccgttct 543
             ||||| ||||||||||||||||||
Sbjct: 81450 attttgacaagtaatgaccgttct 81427
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>gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, complete sequence
          Length = 160174

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aatttatttattttgcttcttctg 25
             |||||||||||||| |||||||||
Sbjct: 97702 aatttatttatttttcttcttctg 97725
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>emb|BX649465.2| Sminthopsis DNA sequence from clone RZPD668-13K23, complete sequence
          Length = 59918

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ataaaaactaatatacacac 195
             ||||||||||||||||||||
Sbjct: 23027 ataaaaactaatatacacac 23008
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>emb|BX088688.6| Zebrafish DNA sequence from clone CH211-278F21 in linkage group 20,
             complete sequence
          Length = 179801

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   cattttcttcttctgacggc 255
             ||||||||||||||||||||
Sbjct: 75133 cattttcttcttctgacggc 75114
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>dbj|AP001317.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684B20, complete
             sequence
          Length = 166459

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ccaaaaacctattgaataaa 154
             ||||||||||||||||||||
Sbjct: 19060 ccaaaaacctattgaataaa 19079
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       caatttatttattttgcttc 20
               ||||||||||||||||||||
Sbjct: 4593635 caatttatttattttgcttc 4593654



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       caatttatttattttgcttc 20
               ||||||||||||||||||||
Sbjct: 4472807 caatttatttattttgcttc 4472826
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 163      aaaaagaagctaaataaaaa 182
                ||||||||||||||||||||
Sbjct: 23033612 aaaaagaagctaaataaaaa 23033593
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>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135323

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aaaaagaagctaaataaaaa 182
             ||||||||||||||||||||
Sbjct: 72976 aaaaagaagctaaataaaaa 72995
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>emb|Z98304.1|HS54B20 Human DNA sequence from clone RP1-54B20 on chromosome Xp11.1-11.3
              Contains the 5' end of the SSX6 gene for synovial sarcoma X
              breakpoint 6, two novel genes similar to a C2H2 type zinc
              finger protein, a novel gene, a novel gene similar to
              lysozyme C (1,4-beta-N-acetylmuramidase), the ZNF81 gene
              for zinc finger protein 81 (HFZ20) and three CpG islands,
              complete sequence
          Length = 209618

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    taaataaaaactaatatacacact 196
              |||||||||||| |||||||||||
Sbjct: 178557 taaataaaaacttatatacacact 178534


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,417,607
Number of Sequences: 3902068
Number of extensions: 8417607
Number of successful extensions: 191241
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190632
Number of HSP's gapped (non-prelim): 607
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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