>gb|U36939.1|HVU36939 Hordeum vulgare vacuolar ATPase catalytic subunit mRNA, partial cds
          Length = 2089

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 1    tcctgaanaaacaaggctgtctgtctgtcgcnnnnnnnggggatcctgaaacgta 55
            ||||||| |||||||||||||||||||||||       |||||||||||||||||
Sbjct: 1914 tcctgaaaaaacaaggctgtctgtctgtcgcaaaaaaaggggatcctgaaacgta 1860

>dbj|AB032840.1| Hordeum vulgare HVA/68 mRNA for vacuolar proton-ATPase, complete cds
          Length = 2281

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 1    tcctgaanaaacaaggctgtctgtctgtcgcnnnnnnnggggatcctgaaacgta 55
            ||||||| |||||||||||||||||||||||       |||||||||||||||||
Sbjct: 2091 tcctgaaaaaacaaggctgtctgtctgtcgcaaaaaaaggggatcctgaaacgta 2037

>gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit A mRNA, complete cds
          Length = 2358

 Score = 44.1 bits (22), Expect = 0.032
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 5    gaanaaacaaggctgtctgtctgtc 29
            ||| |||||||||||||||||||||
Sbjct: 2158 gaaaaaacaaggctgtctgtctgtc 2134

>emb|AL139812.11| Human DNA sequence from clone RP1-19N1 on chromosome Xq21.33-22.3
              Contains the gene for a novel protein similar to
              chondroitin sulfate GalNAcT-2 (GALNACT-2), complete
              sequence
          Length = 144242

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     aacaaggctgtctgtctgt 28
              |||||||||||||||||||
Sbjct: 101268 aacaaggctgtctgtctgt 101250

>emb|CR391627.1| Gallus gallus finished cDNA, clone ChEST893o3
          Length = 1074

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   aaacaaggctgtctgtctg 27
           |||||||||||||||||||
Sbjct: 746 aaacaaggctgtctgtctg 728

>gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, complete sequence
          Length = 237423

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    caaggctgtctgtctgtc 29
             ||||||||||||||||||
Sbjct: 42840 caaggctgtctgtctgtc 42857

>gb|AC154867.1| Medicago truncatula chromosome 2 BAC clone mte1-6j20, complete sequence
          Length = 109340

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     aaacaaggctgtctgtct 26
             ||||||||||||||||||
Sbjct: 13650 aaacaaggctgtctgtct 13667

>gb|AC165141.4| Mus musculus BAC clone RP24-535G5 from chromosome 17, complete sequence
          Length = 187883

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    caaggctgtctgtctgtc 29
             ||||||||||||||||||
Sbjct: 17740 caaggctgtctgtctgtc 17757

>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence
          Length = 236084

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     caaggctgtctgtctgtc 29
              ||||||||||||||||||
Sbjct: 181576 caaggctgtctgtctgtc 181593

>gb|AC111275.4| Rattus norvegicus 4 BAC CH230-49L22 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227595

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     aacaaggctgtctgtctg 27
              ||||||||||||||||||
Sbjct: 196921 aacaaggctgtctgtctg 196904

>gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, complete sequence
          Length = 275200

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 9      aaacaaggctgtctgtct 26
              ||||||||||||||||||
Sbjct: 204671 aaacaaggctgtctgtct 204654

>gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 237374

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   aacaaggctgtctgtctg 27
            ||||||||||||||||||
Sbjct: 7180 aacaaggctgtctgtctg 7163

>gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromosome 1, complete sequence
          Length = 192460

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      aaacaaggctgtctgtct 26
              ||||||||||||||||||
Sbjct: 140540 aaacaaggctgtctgtct 140557

>gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, complete sequence
          Length = 208509

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    caaggctgtctgtctgtc 29
             ||||||||||||||||||
Sbjct: 66116 caaggctgtctgtctgtc 66099

>dbj|AK078197.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430500M07
            product:unclassifiable, full insert sequence
          Length = 2603

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   caaggctgtctgtctgtc 29
            ||||||||||||||||||
Sbjct: 1676 caaggctgtctgtctgtc 1659

>emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on chromosome 2, complete
              sequence
          Length = 171715

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     aacaaggctgtctgtctg 27
              ||||||||||||||||||
Sbjct: 122428 aacaaggctgtctgtctg 122445

>gb|AC141471.4| Mus musculus BAC clone RP24-326K11 from 18, complete sequence
          Length = 216048

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    caaggctgtctgtctgtc 29
             ||||||||||||||||||
Sbjct: 35059 caaggctgtctgtctgtc 35042

>emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chromosome 17, complete
            sequence
          Length = 187977

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   caaggctgtctgtctgtc 29
            ||||||||||||||||||
Sbjct: 9293 caaggctgtctgtctgtc 9276

>emb|AL844873.4| Mouse DNA sequence from clone RP23-26H8 on chromosome 2, complete
             sequence
          Length = 250495

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 9     aaacaaggctgtctgtct 26
             ||||||||||||||||||
Sbjct: 48113 aaacaaggctgtctgtct 48096


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 484,720
Number of Sequences: 3902068
Number of extensions: 484720
Number of successful extensions: 305477
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 305295
Number of HSP's gapped (non-prelim): 180
length of query: 55
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 35
effective length of database: 17,155,003,908
effective search space: 600425136780
effective search space used: 600425136780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)