| Clone Name | rbags20i19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK105823.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-D09, full insert sequence Length = 1638 Score = 242 bits (122), Expect = 1e-60 Identities = 236/274 (86%) Strand = Plus / Minus Query: 241 tcaaaattggcttaagctgaaaatgttgtcctgccggctggaggaacatcaacaaccttc 300 ||||||||| |||||||||||||||||| ||||| ||||| |||| | ||||||||||| Sbjct: 1403 tcaaaattgacttaagctgaaaatgttgggctgccagctggtggaatagcaacaaccttc 1344 Query: 301 cctacagctattgtctttccttcagtccgtagagtgaaccttccaagctgagggaaatca 360 |||||||| | ||||| ||||| || || || || ||||||||||||||||| |||||| Sbjct: 1343 cctacagccaccgtcttaccttctgttcgaagtgtaaaccttccaagctgaggaaaatca 1284 Query: 361 gagaacttctctatgcatatcaaattagtcacctggacacggcaaactacaactgcacca 420 ||||| |||||||| || ||||||||| ||||||| | |||||||||||||| |||||| Sbjct: 1283 gagaagttctctatacaaatcaaattattcacctgaatgcggcaaactacaaccgcacca 1224 Query: 421 ttcttcacaaaaagaggcttcctctttgtcttctttttctttgggtcagttactttcgct 480 |||||||||||||||||||||| ||||| || || |||||||| |||| | ||||| | Sbjct: 1223 ttcttcacaaaaagaggcttccgctttggttttttcttctttggatcagcttctttcttt 1164 Query: 481 ttcttcatgtcaatttcctctatgagatccacaa 514 |||||||| |||||||||||||| ||||| |||| Sbjct: 1163 ttcttcatatcaatttcctctataagatcaacaa 1130 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 34 atataaccacactgattttacaacctctcaaacatgtgaccagagcta 81 ||||| ||| ||||||||||||||||| ||||||||| || ||||||| Sbjct: 1582 atatacccatactgattttacaacctcacaaacatgtaacaagagcta 1535
>gb|AY104550.1| Zea mays PCO101158 mRNA sequence Length = 1249 Score = 216 bits (109), Expect = 6e-53 Identities = 228/266 (85%), Gaps = 5/266 (1%) Strand = Plus / Minus Query: 241 tcaaaattggcttaagctgaaaatgttgtcctgccggctggaggaacatcaacaaccttc 300 |||||||||||||||||| | ||||||| ||||| || || |||||||||||||||||| Sbjct: 785 tcaaaattggcttaagctcagaatgttgggctgccagcaggcggaacatcaacaaccttc 726 Query: 301 cctacagctattgtctttccttcagtccgtagagtgaaccttccaagctgagggaaatca 360 ||| |||| ||||| |||||||| | || || |||||||||||||| ||||||||| Sbjct: 725 --tacggctaccgtcttcccttcagttctaagtgtaaaccttccaagctgtgggaaatca 668 Query: 361 gagaacttctctatgcatatcaaattagtcacctggacacggcaaactacaactgcacca 420 ||||||||||||||||||||||| ||| ||||||| | |||||||| |||| ||||||| Sbjct: 667 gagaacttctctatgcatatcaagttattcacctgaatgcggcaaacaacaattgcacca 608 Query: 421 ttcttcacaaaaagaggcttcctctttgtcttctttttctttgggtcagttactttcgct 480 |||||||||||||||||||||||||||| || || ||||| || || | ||||| | Sbjct: 607 ttcttcacaaaaagaggcttcctctttggttttttcttcttcggatc---tcctttcttt 551 Query: 481 ttcttcatgtcaatttcctctatgag 506 |||||||||||||||||||||||||| Sbjct: 550 ttcttcatgtcaatttcctctatgag 525
>ref|XM_471489.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1605 Score = 178 bits (90), Expect = 1e-41 Identities = 156/178 (87%) Strand = Plus / Minus Query: 337 aaccttccaagctgagggaaatcagagaacttctctatgcatatcaaattagtcacctgg 396 ||||||||||||||||| ||||||||||| |||||||| || ||||||||| ||||||| Sbjct: 1559 aaccttccaagctgaggaaaatcagagaagttctctatacaaatcaaattattcacctga 1500 Query: 397 acacggcaaactacaactgcaccattcttcacaaaaagaggcttcctctttgtcttcttt 456 | |||||||||||||| |||||||||||||||||||||||||||| ||||| || || Sbjct: 1499 atgcggcaaactacaaccgcaccattcttcacaaaaagaggcttccgctttggttttttc 1440 Query: 457 ttctttgggtcagttactttcgctttcttcatgtcaatttcctctatgagatccacaa 514 |||||||| |||| | ||||| ||||||||| |||||||||||||| ||||| |||| Sbjct: 1439 ttctttggatcagcttctttctttttcttcatatcaatttcctctataagatcaacaa 1382
>ref|XM_465449.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 127 bits (64), Expect = 4e-26 Identities = 121/140 (86%) Strand = Plus / Minus Query: 319 ccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaacttctctatgcat 378 ||||||||||| || || || |||||||||||||| || |||||||| ||||| || || Sbjct: 1118 ccttcagtccggagcgtaaatcttccaagctgaggaaactcagagaagttctcgatacaa 1059 Query: 379 atcaaattagtcacctggacacggcaaactacaactgcaccattcttcacaaaaagaggc 438 ||||||||| | ||||| ||||||||||| || || || |||||||||||||||||||| Sbjct: 1058 atcaaattattgacctgaacacggcaaacgacgacagctccattcttcacaaaaagaggt 999 Query: 439 ttcctctttgtcttcttttt 458 |||||||||| ||||||||| Sbjct: 998 ttcctctttgacttcttttt 979
>emb|AL663014.3|OSJN00212 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0067G11, complete sequence Length = 156983 Score = 117 bits (59), Expect = 4e-23 Identities = 101/115 (87%) Strand = Plus / Minus Query: 400 cggcaaactacaactgcaccattcttcacaaaaagaggcttcctctttgtcttctttttc 459 |||||||||||||| |||||||||||||||||||||||||||| ||||| || || ||| Sbjct: 98371 cggcaaactacaaccgcaccattcttcacaaaaagaggcttccgctttggttttttcttc 98312 Query: 460 tttgggtcagttactttcgctttcttcatgtcaatttcctctatgagatccacaa 514 ||||| |||| | ||||| ||||||||| |||||||||||||| ||||| |||| Sbjct: 98311 tttggatcagcttctttctttttcttcatatcaatttcctctataagatcaacaa 98257 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 241 tcaaaattggcttaagctgaaaatgttgtcctgccggctggaggaacatcaacaaccttc 300 ||||||||| |||||||||||||||||| ||||| ||||| |||| | ||||||||||| Sbjct: 99604 tcaaaattgacttaagctgaaaatgttgggctgccagctggtggaatagcaacaaccttc 99545 Query: 301 cctacagc 308 |||||||| Sbjct: 99544 cctacagc 99537 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 337 aaccttccaagctgagggaaatcagagaacttctctatgcatatcaaattagtcacct 394 ||||||||||||||||| ||||||||||| |||||||| || ||||||||| |||||| Sbjct: 98543 aaccttccaagctgaggaaaatcagagaagttctctatacaaatcaaattattcacct 98486 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 34 atataaccacactgattttacaacctctcaaacatgtgaccagagcta 81 ||||| ||| ||||||||||||||||| ||||||||| || ||||||| Sbjct: 99855 atatacccatactgattttacaacctcacaaacatgtaacaagagcta 99808
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 117 bits (59), Expect = 4e-23 Identities = 101/115 (87%) Strand = Plus / Minus Query: 400 cggcaaactacaactgcaccattcttcacaaaaagaggcttcctctttgtcttctttttc 459 |||||||||||||| |||||||||||||||||||||||||||| ||||| || || ||| Sbjct: 11337181 cggcaaactacaaccgcaccattcttcacaaaaagaggcttccgctttggttttttcttc 11337122 Query: 460 tttgggtcagttactttcgctttcttcatgtcaatttcctctatgagatccacaa 514 ||||| |||| | ||||| ||||||||| |||||||||||||| ||||| |||| Sbjct: 11337121 tttggatcagcttctttctttttcttcatatcaatttcctctataagatcaacaa 11337067 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 241 tcaaaattggcttaagctgaaaatgttgtcctgccggctggaggaacatcaacaaccttc 300 ||||||||| |||||||||||||||||| ||||| ||||| |||| | ||||||||||| Sbjct: 11338414 tcaaaattgacttaagctgaaaatgttgggctgccagctggtggaatagcaacaaccttc 11338355 Query: 301 cctacagc 308 |||||||| Sbjct: 11338354 cctacagc 11338347 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 337 aaccttccaagctgagggaaatcagagaacttctctatgcatatcaaattagtcacct 394 ||||||||||||||||| ||||||||||| |||||||| || ||||||||| |||||| Sbjct: 11337353 aaccttccaagctgaggaaaatcagagaagttctctatacaaatcaaattattcacct 11337296 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 34 atataaccacactgattttacaacctctcaaacatgtgaccagagcta 81 ||||| ||| ||||||||||||||||| ||||||||| || ||||||| Sbjct: 11338665 atatacccatactgattttacaacctcacaaacatgtaacaagagcta 11338618
>gb|U39764.1|RCUERF3 Ricinus communis eukaryotic release factor 3 mRNA, partial cds, 3' end Length = 674 Score = 107 bits (54), Expect = 4e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 322 tcagtccgtagagtgaaccttccaagctgagggaaatcagagaacttctctatgcatatc 381 ||||| || ||||||||||||||||| || |||||||| || |||||||| ||||||||| Sbjct: 392 tcagttcgaagagtgaaccttccaagttgtgggaaatctgaaaacttctcgatgcatatc 333 Query: 382 aaattagtcacctggacacggcaaactacaactgcaccattcttcacaaa 431 | |||| | ||||||||||||| || ||||| ||||||||||||||||| Sbjct: 332 atattatttgcctggacacggcacacaacaacagcaccattcttcacaaa 283
>ref|NM_001035986.1| Arabidopsis thaliana GTP binding / translation factor, nucleic acid binding / translation release factor AT1G18070 transcript variant AT1G18070.2 mRNA, complete cds Length = 2116 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 294 aaccttccctacagctattgtctttccttcagtccgtagagtgaaccttccaagctgagg 353 |||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 1690 aacctttccaacagcaattgtttttccttcagttcgtagagtgaatcttccaagttgagg 1631 Query: 354 gaaatcagagaacttctctatgcatatcaaattagtcacctggacacggcaaactacaac 413 |||||| ||||| || || || || || |||| || ||||||| ||||| || ||| | Sbjct: 1630 gaaatctgagaatttttcaatacaaattgaattcgtaacctggatgcggcacacaacagc 1571 Query: 414 tgcaccattcttcacaaa 431 ||||||||||||||||| Sbjct: 1570 agcaccattcttcacaaa 1553
>ref|NM_101669.2| Arabidopsis thaliana GTP binding / translation factor, nucleic acid binding / translation release factor AT1G18070 transcript variant AT1G18070.1 mRNA, complete cds Length = 2131 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 294 aaccttccctacagctattgtctttccttcagtccgtagagtgaaccttccaagctgagg 353 |||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 1690 aacctttccaacagcaattgtttttccttcagttcgtagagtgaatcttccaagttgagg 1631 Query: 354 gaaatcagagaacttctctatgcatatcaaattagtcacctggacacggcaaactacaac 413 |||||| ||||| || || || || || |||| || ||||||| ||||| || ||| | Sbjct: 1630 gaaatctgagaatttttcaatacaaattgaattcgtaacctggatgcggcacacaacagc 1571 Query: 414 tgcaccattcttcacaaa 431 ||||||||||||||||| Sbjct: 1570 agcaccattcttcacaaa 1553
>gb|BT008889.1| Arabidopsis thaliana At1g18070 mRNA, complete cds Length = 1599 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 294 aaccttccctacagctattgtctttccttcagtccgtagagtgaaccttccaagctgagg 353 |||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 1566 aacctttccaacagcaattgtttttccttcagttcgtagagtgaatcttccaagttgagg 1507 Query: 354 gaaatcagagaacttctctatgcatatcaaattagtcacctggacacggcaaactacaac 413 |||||| ||||| || || || || || |||| || ||||||| ||||| || ||| | Sbjct: 1506 gaaatctgagaatttttcaatacaaattgaattcgtaacctggatgcggcacacaacagc 1447 Query: 414 tgcaccattcttcacaaa 431 ||||||||||||||||| Sbjct: 1446 agcaccattcttcacaaa 1429
>gb|AY120769.1| Arabidopsis thaliana putative guanine nucleotide regulatory protein (At1g18070) mRNA, complete cds Length = 2068 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 294 aaccttccctacagctattgtctttccttcagtccgtagagtgaaccttccaagctgagg 353 |||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 1674 aacctttccaacagcaattgtttttccttcagttcgtagagtgaatcttccaagttgagg 1615 Query: 354 gaaatcagagaacttctctatgcatatcaaattagtcacctggacacggcaaactacaac 413 |||||| ||||| || || || || || |||| || ||||||| ||||| || ||| | Sbjct: 1614 gaaatctgagaatttttcaatacaaattgaattcgtaacctggatgcggcacacaacagc 1555 Query: 414 tgcaccattcttcacaaa 431 ||||||||||||||||| Sbjct: 1554 agcaccattcttcacaaa 1537
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 391 acctggacacggcaaactacaactgcaccattcttcacaaaaagaggcttcctctttgtc 450 ||||| ||||||||||| || || || |||||||||||||||||||| |||||||||| | Sbjct: 15255029 acctgaacacggcaaacgacgacagctccattcttcacaaaaagaggtttcctctttgac 15255088 Query: 451 ttcttttt 458 |||||||| Sbjct: 15255089 ttcttttt 15255096 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 319 ccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaacttctctatgcat 378 ||||||||||| || || || |||||||||||||| || |||||||| ||||| || || Sbjct: 15254849 ccttcagtccggagcgtaaatcttccaagctgaggaaactcagagaagttctcgatacaa 15254908 Query: 379 atcaaatta 387 ||||||||| Sbjct: 15254909 atcaaatta 15254917
>dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07 Length = 146008 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 391 acctggacacggcaaactacaactgcaccattcttcacaaaaagaggcttcctctttgtc 450 ||||| ||||||||||| || || || |||||||||||||||||||| |||||||||| | Sbjct: 138804 acctgaacacggcaaacgacgacagctccattcttcacaaaaagaggtttcctctttgac 138863 Query: 451 ttcttttt 458 |||||||| Sbjct: 138864 ttcttttt 138871 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 319 ccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaacttctctatgcat 378 ||||||||||| || || || |||||||||||||| || |||||||| ||||| || || Sbjct: 138624 ccttcagtccggagcgtaaatcttccaagctgaggaaactcagagaagttctcgatacaa 138683 Query: 379 atcaaatta 387 ||||||||| Sbjct: 138684 atcaaatta 138692
>dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04 Length = 158792 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 391 acctggacacggcaaactacaactgcaccattcttcacaaaaagaggcttcctctttgtc 450 ||||| ||||||||||| || || || |||||||||||||||||||| |||||||||| | Sbjct: 66150 acctgaacacggcaaacgacgacagctccattcttcacaaaaagaggtttcctctttgac 66209 Query: 451 ttcttttt 458 |||||||| Sbjct: 66210 ttcttttt 66217 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 319 ccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaacttctctatgcat 378 ||||||||||| || || || |||||||||||||| || |||||||| ||||| || || Sbjct: 65970 ccttcagtccggagcgtaaatcttccaagctgaggaaactcagagaagttctcgatacaa 66029 Query: 379 atcaaatta 387 ||||||||| Sbjct: 66030 atcaaatta 66038
>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete sequence Length = 81129 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 314 tctttccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaa 365 |||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| Sbjct: 20450 tcttaccttcagttcgtagagtgaatcttccaagttgagggaaatctgagaa 20501
>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I, complete sequence Length = 92948 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 314 tctttccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaa 365 |||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| Sbjct: 5754 tcttaccttcagttcgtagagtgaatcttccaagttgagggaaatctgagaa 5805
>gb|L38829.1|TOBSUP2NT Nicotiana tabacum SUP2 mRNA, 3' end of cds Length = 1663 Score = 54.0 bits (27), Expect = 5e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 319 ccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaacttctctatgcat 378 |||||||| || |||||||| | |||||| || | || || ||||||||||||| ||| Sbjct: 1173 ccttcagtgcgaagagtgaatcgtccaagttgtgcaaagtcggagaacttctctacacat 1114 Query: 379 atcaaattagtcacctggacacggcaaactacaactgcaccattcttcacaaaaagagg 437 |||| |||| ||||||| |||||||| | |||| ||||| ||||| ||||| ||||| Sbjct: 1113 atcagattattcacctgaacacggcataaaacaatagcaccgttctttacaaacagagg 1055
>gb|L38828.1|TOBSUP1NT Nicotiana tabacum EF-1-alpha-related GTP-binding protein (SUP1) mRNA, complete cds Length = 2205 Score = 54.0 bits (27), Expect = 5e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 319 ccttcagtccgtagagtgaaccttccaagctgagggaaatcagagaacttctctatgcat 378 |||||||| || |||||||| | |||||| || | || || ||||||||||||| ||| Sbjct: 1522 ccttcagtgcgaagagtgaatcgtccaagttgtgcaaagtcggagaacttctctacacat 1463 Query: 379 atcaaattagtcacctggacacggcaaactacaactgcaccattcttcacaaaaagagg 437 |||| |||| ||||||| |||||||| | |||| ||||| ||||| ||||| ||||| Sbjct: 1462 atcagattattcacctgaacacggcataaaacaatagcaccgttctttacaaacagagg 1404
>ref|XM_948078.1| Theileria annulata strain Ankara elongation factor subunit (TA08815) partial mRNA Length = 1620 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 328 cgtagagtgaaccttccaagctgagggaaatcagagaacttctcta 373 ||||||||||||||||| |||||||| | || ||||||||||||| Sbjct: 1562 cgtagagtgaaccttcctagctgaggacagtctgagaacttctcta 1517
>gb|AC163099.5| Mus musculus chromosome 8, clone RP23-395L6, complete sequence Length = 188439 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 cctctttgtcttctttttcttt 462 |||||||||||||||||||||| Sbjct: 94515 cctctttgtcttctttttcttt 94494
>gb|AC122262.3| Mus musculus BAC clone RP23-190N21 from chromosome 9, complete sequence Length = 193762 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 440 tcctctttgtcttctttttctt 461 |||||||||||||||||||||| Sbjct: 191770 tcctctttgtcttctttttctt 191791
>ref|XM_581213.2| PREDICTED: Bos taurus similar to p90 autoantigen (LOC538580), mRNA Length = 3046 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttct 460 |||||||||||||||||||||| Sbjct: 2808 ttcctctttgtcttctttttct 2787
>gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome 9, complete sequence Length = 145102 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 440 tcctctttgtcttctttttctt 461 |||||||||||||||||||||| Sbjct: 97009 tcctctttgtcttctttttctt 96988
>emb|AL078602.14|HSJ360M22 Human DNA sequence from clone RP3-360M22 on chromosome 6q26-27 Contains a CpG island, complete sequence Length = 152129 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 438 cttcctctttgtcttctttttc 459 |||||||||||||||||||||| Sbjct: 107200 cttcctctttgtcttctttttc 107221
>gb|DQ271262.1| Mustela vison clone III4P21 microsatellite sequence Length = 803 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 440 tcctctttgtcttctttttctt 461 |||||||||||||||||||||| Sbjct: 416 tcctctttgtcttctttttctt 395
>gb|AC027152.11| Homo sapiens chromosome 17, clone RP11-456D7, complete sequence Length = 132735 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 cacactgattttacaacctctc 62 |||||||||||||||||||||| Sbjct: 69763 cacactgattttacaacctctc 69742
>gb|AC107236.8| Mus musculus chromosome 8, clone RP23-296C23, complete sequence Length = 193105 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 cctctttgtcttctttttcttt 462 |||||||||||||||||||||| Sbjct: 2631 cctctttgtcttctttttcttt 2610
>ref|XM_636514.1| Dictyostelium discoideum hypothetical protein (DDB0205993), partial mRNA Length = 4086 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttcttt 462 |||||||||| |||||||||||||| Sbjct: 3436 cttcctctttttcttctttttcttt 3412
>gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome 8, complete sequence Length = 246658 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 taaccacactgattttacaac 57 ||||||||||||||||||||| Sbjct: 175379 taaccacactgattttacaac 175359
>ref|XM_953781.1| Neurospora crassa OR74A hypothetical protein (NCU07381.1) partial mRNA Length = 2631 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 cataaccatcatcatcctgtc 242 ||||||||||||||||||||| Sbjct: 973 cataaccatcatcatcctgtc 953
>ref|XM_327666.1| Neurospora crassa OR74A hypothetical protein (NCU07381.1) partial mRNA Length = 2631 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 cataaccatcatcatcctgtc 242 ||||||||||||||||||||| Sbjct: 973 cataaccatcatcatcctgtc 953
>ref|XM_711816.1| Candida albicans SC5314 hypothetical protein (CaO19_12620), mRNA Length = 612 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 caacataaccatcatcatcct 239 ||||||||||||||||||||| Sbjct: 223 caacataaccatcatcatcct 203
>ref|XM_711884.1| Candida albicans SC5314 hypothetical protein (CHS6) partial mRNA Length = 2286 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 caacataaccatcatcatcct 239 ||||||||||||||||||||| Sbjct: 223 caacataaccatcatcatcct 203
>ref|XM_883821.1| Candida albicans SC5314 hypothetical protein (CaJ7.0348) partial mRNA Length = 2286 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 caacataaccatcatcatcct 239 ||||||||||||||||||||| Sbjct: 223 caacataaccatcatcatcct 203
>gb|AC101229.8| Mus musculus chromosome 8, clone RP23-96L20, complete sequence Length = 213812 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 taaccacactgattttacaac 57 ||||||||||||||||||||| Sbjct: 55445 taaccacactgattttacaac 55425
>emb|AL353895.4| Human DNA sequence from clone RP11-503K16 on chromosome 9 Contains the 3' end of the ADAMTSL1 gene for ADAMTS-like (ADAMTSR1, MGC40139) and a ras-related protein family pseudogene, complete sequence Length = 163163 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 cttcctctttgtcttcttttt 458 ||||||||||||||||||||| Sbjct: 100054 cttcctctttgtcttcttttt 100034
>emb|AL158157.8| Human DNA sequence from clone RP11-413D24 on chromosome 9, complete sequence Length = 183410 Score = 42.1 bits (21), Expect = 1.8 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 435 aggcttcctctttgtcttctttttctttg 463 ||||||||| ||||||||||||||||||| Sbjct: 176890 aggcttcct-tttgtcttctttttctttg 176863
>emb|AJ250310.1|CAL250310 Candida albicans cyr1 gene (partial), chs6 gene, yjl097b gene, yjl097a gene, ykr049 gene, ynl191 gene and sap185 gene Length = 12662 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 caacataaccatcatcatcct 239 ||||||||||||||||||||| Sbjct: 3773 caacataaccatcatcatcct 3753
>emb|AJ721122.1| Gallus gallus mRNA for hypothetical protein, clone 36h7 Length = 2603 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttcttt 462 |||||||||| |||||||||||||| Sbjct: 1924 cttcctctttttcttctttttcttt 1900
>gb|AC084522.1|CBRG19L07 Caenorhabditis briggsae cosmid G19L07, complete sequence Length = 34433 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 438 cttcctctttgtcttctttttcttt 462 |||| |||||||||||||||||||| Sbjct: 20685 cttcttctttgtcttctttttcttt 20709
>gb|AF295379.1|AF295379 Candida albicans adenylyl cyclase (CDC35) gene, complete cds Length = 8776 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 caacataaccatcatcatcct 239 ||||||||||||||||||||| Sbjct: 8350 caacataaccatcatcatcct 8330
>gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, complete sequence Length = 143947 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 tcaaacatgtgaccagagcta 81 ||||||||||||||||||||| Sbjct: 36007 tcaaacatgtgaccagagcta 35987
>gb|AC151991.2| Mus musculus BAC clone RP23-216P20 from 8, complete sequence Length = 174533 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 taaccacactgattttacaac 57 ||||||||||||||||||||| Sbjct: 119040 taaccacactgattttacaac 119060
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 caacataaccatcatcatcct 239 ||||||||||||||||||||| Sbjct: 662211 caacataaccatcatcatcct 662231
>ref|XM_634282.1| Dictyostelium discoideum hypothetical protein (DDB0205006), partial mRNA Length = 840 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 cttcctctttgtcttctttttctt 461 |||| ||||||||||||||||||| Sbjct: 795 cttcttctttgtcttctttttctt 818
>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence Length = 188836 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 21829 ttcctctttttcttctttttcttt 21806
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cttcacaaaaagaggcttcc 442 |||||||||||||||||||| Sbjct: 1522079 cttcacaaaaagaggcttcc 1522060
>gb|BC103776.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, mRNA (cDNA clone MGC:117904 IMAGE:6492142), complete cds Length = 2181 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 392 ttcctctttttcttctttttcttt 369
>gb|AC145120.1| Solanum demissum chromosome 5 BAC PGEC446O19 genomic sequence, complete sequence Length = 122450 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ctggaaaaattatactaaat 173 |||||||||||||||||||| Sbjct: 35144 ctggaaaaattatactaaat 35125
>gb|BC028246.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, mRNA (cDNA clone MGC:40620 IMAGE:2582151), complete cds Length = 2232 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 426 ttcctctttttcttctttttcttt 403
>ref|NM_025860.2| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (Ddx18), mRNA Length = 2232 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 426 ttcctctttttcttctttttcttt 403
>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence Length = 189263 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 cttcctctttgtcttctttttctt 461 |||| ||||||||||||||||||| Sbjct: 117804 cttcttctttgtcttctttttctt 117827
>ref|XR_001894.1| PREDICTED: Mus musculus similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (LOC666578), mRNA Length = 2132 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 362 ttcctctttttcttctttttcttt 339
>gb|AC124547.4| Mus musculus BAC clone RP23-274I8 from chromosome 1, complete sequence Length = 225058 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 gtcaacataaccatcatcat 236 |||||||||||||||||||| Sbjct: 195472 gtcaacataaccatcatcat 195453
>ref|XM_742443.1| Aspergillus fumigatus Af293 hypothetical protein (Afu8g07350) partial mRNA Length = 1044 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gataacacagcaccactttg 209 |||||||||||||||||||| Sbjct: 173 gataacacagcaccactttg 154
>emb|Z67884.1|CET14G8 Caenorhabditis elegans Cosmid T14G8, complete sequence Length = 27975 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 22374 tctttgtcttctttttcttt 22355
>gb|AC122189.4| Mus musculus BAC clone RP23-36C8 from 1, complete sequence Length = 247309 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 gtcaacataaccatcatcat 236 |||||||||||||||||||| Sbjct: 53744 gtcaacataaccatcatcat 53725
>gb|AC122921.2| Mus musculus BAC clone RP23-34J4 from 7, complete sequence Length = 176637 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 176514 tctttgtcttctttttcttt 176495
>gb|AC121783.2| Mus musculus BAC clone RP23-370I9 from 18, complete sequence Length = 184366 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 taaatcgatctcgctgcttc 188 |||||||||||||||||||| Sbjct: 22385 taaatcgatctcgctgcttc 22404
>gb|AC115295.4| Mus musculus BAC clone RP23-188O19 from 3, complete sequence Length = 202201 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 ctttccttcagtccgtagagtgaa 338 ||||||||||||| |||||||||| Sbjct: 69533 ctttccttcagtctgtagagtgaa 69510
>ref|XM_651502.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (10.t00039) partial mRNA Length = 5217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 761 tctttgtcttctttttcttt 742
>ref|XM_851445.1| PREDICTED: Canis familiaris similar to arachidonate 12-lipoxygenase, transcript variant 2 (LOC479476), mRNA Length = 2339 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 tacagctattgtctttccttcagt 326 ||||||| |||||||||||||||| Sbjct: 425 tacagcttttgtctttccttcagt 402
>ref|XM_536613.2| PREDICTED: Canis familiaris similar to arachidonate 12-lipoxygenase, transcript variant 1 (LOC479476), mRNA Length = 2330 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 tacagctattgtctttccttcagt 326 ||||||| |||||||||||||||| Sbjct: 416 tacagcttttgtctttccttcagt 393
>gb|AC101813.5| Mus musculus chromosome 1, clone RP24-315D8, complete sequence Length = 159286 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 30542 ttcctctttttcttctttttcttt 30519
>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the TAF13 gene for TAF13 RNA polymerase II TATA box binding protein (TBP)-associated factor 18kDa, a RAN member RAS oncogene family (RAN) pseudogene, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of a novel gene (KIAA0893) and three CpG islands, complete sequence Length = 107685 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 ttgtcttctttttctttggg 465 |||||||||||||||||||| Sbjct: 11333 ttgtcttctttttctttggg 11314
>emb|AL591475.9| Human DNA sequence from clone RP11-314C16 on chromosome 6 Contains a novel gene and a CpG island, complete sequence Length = 48654 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ctattgtctttccttcagtc 327 |||||||||||||||||||| Sbjct: 45010 ctattgtctttccttcagtc 44991
>emb|AL162420.13| Human DNA sequence from clone RP11-380P16 on chromosome 9 Contains the IFNA17 gene for interferon, alpha 17, a interferon, omega 1 (IFNW1) pseudogene,the IFNA14 gene for interferon, alpha 14, the IFNA5 gene for interferon, alpha 5, a novel gene (KIAA1354) (FLJ13568) and 2 interferon pseudogenes, complete sequence Length = 124491 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 54664 tctttgtcttctttttcttt 54683
>emb|AL160173.9| Human DNA sequence from clone RP11-6I13 on chromosome 1q31.1-31.3, complete sequence Length = 33407 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tcctctttgtcttctttttc 459 |||||||||||||||||||| Sbjct: 6703 tcctctttgtcttctttttc 6684
>emb|AL138770.3| Human DNA sequence from clone RP4-533I18 on chromosome 10, complete sequence Length = 63937 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||| ||||||||||||| Sbjct: 32311 cttcctctttctcttctttttctt 32334
>ref|XM_777804.1| PREDICTED: Strongylocentrotus purpuratus similar to AT-rich interactive domain-containing protein 1A (ARID domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like)... (LOC577586), mRNA Length = 1143 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 aacatcaacaaccttccctacagc 308 |||||||||||||||||| ||||| Sbjct: 278 aacatcaacaaccttcccaacagc 301
>gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete sequence Length = 201643 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 aggcttcctctttgtcttct 454 |||||||||||||||||||| Sbjct: 136673 aggcttcctctttgtcttct 136654
>emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-085P01, complete sequence Length = 218832 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 130161 tctttgtcttctttttcttt 130142
>emb|BX255874.1| Mouse DNA sequence from clone RP24-181E15 on chromosome 11 Contains part of a novel gene (4933435A13Rik), complete sequence Length = 26866 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||| ||||||||||||| Sbjct: 10300 cttcctctttctcttctttttctt 10277
>gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosome 16, complete sequence Length = 196765 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gactcatggagcctggctgg 157 |||||||||||||||||||| Sbjct: 84650 gactcatggagcctggctgg 84631
>gb|AC025888.8| Homo sapiens chromosome 18, clone RP11-479H18, complete sequence Length = 178201 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 tgtcttctttttctttgggt 466 |||||||||||||||||||| Sbjct: 90663 tgtcttctttttctttgggt 90644
>dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31, MOG, TRIM15, KRAB, TRIM40 genes, complete cds Length = 143480 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 25753 tctttgtcttctttttcttt 25734
>dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, UBD, OLF42-3, OLF42-2, OLF42-1, KRAB genes, complete cds Length = 156044 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 119905 tctttgtcttctttttcttt 119886
>gb|AC095048.3| Homo sapiens BAC clone RP11-239A9 from 4, complete sequence Length = 123661 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttt 457 |||||||||||||||||||| Sbjct: 66135 cttcctctttgtcttctttt 66116
>gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete sequence Length = 94665 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 ctggaaaaattatactaaat 173 |||||||||||||||||||| Sbjct: 91257 ctggaaaaattatactaaat 91276
>dbj|AB169853.1| Macaca fascicularis brain cDNA, clone: QtrA-10430, similar to human heat shock 90kDa protein 1, alpha (HSPCA), mRNA, RefSeq: NM_005348.2 Length = 2958 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||| ||||||||||||||||||| Sbjct: 789 cttcttctttgtcttctttttctt 766
>gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome 7, complete sequence Length = 228885 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 88552 tctttgtcttctttttcttt 88533
>dbj|AK019845.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930599F06 product:DEAD/H (ASP-GLU-ALA-ASP/HIS) BOX POLYPEPTIDE 18 (MYC-REGULATED) homolog [Homo sapiens], full insert sequence Length = 2167 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 379 ttcctctttttcttctttttcttt 356
>dbj|AK012878.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810037P19 product:weakly similar to DEAD/H (ASP-GLU-ALA-ASP/HIS) BOX POLYPEPTIDE 18 (MYC-REGULATED) [Homo sapiens], full insert sequence Length = 420 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 395 ttcctctttttcttctttttcttt 372
>ref|NM_001029743.2| Caenorhabditis elegans T14G8.3b (T14G8.3) mRNA, complete cds Length = 2763 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 2584 tctttgtcttctttttcttt 2565
>ref|NM_001029742.2| Caenorhabditis elegans T14G8.3a (T14G8.3) mRNA, complete cds Length = 3289 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 2588 tctttgtcttctttttcttt 2569
>dbj|AK075864.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310005B10 product:DEAD/H (ASP-GLU-ALA-ASP/HIS) BOX POLYPEPTIDE 18 (MYC-REGULATED) homolog [Homo sapiens], full insert sequence Length = 2179 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 392 ttcctctttttcttctttttcttt 369
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||||| |||||||||||| Sbjct: 22734799 ttcctctttgttttctttttcttt 22734776
>gb|AC068597.6| Homo sapiens BAC clone RP11-320L2 from 2, complete sequence Length = 153190 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||| ||||||||||||| Sbjct: 754 cttcctctttttcttctttttctt 731
>gb|AC073091.5| Homo sapiens BAC clone RP11-335E8 from 2, complete sequence Length = 185174 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||| ||||||||||||| Sbjct: 184508 cttcctctttttcttctttttctt 184485
>gb|AC023468.6| Homo sapiens BAC clone RP11-432O12 from 2, complete sequence Length = 170871 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ctttgtcttctttttctttg 463 |||||||||||||||||||| Sbjct: 85815 ctttgtcttctttttctttg 85796
>ref|NM_213973.1| Sus scrofa 90-kDa heat shock protein (HSP90), mRNA Length = 2456 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||||||||| ||||||| Sbjct: 754 cttcctctttgtcttccttttctt 731
>gb|AC139724.1| Homo sapiens BAC clone RP11-1H20 from 4, complete sequence Length = 155873 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttt 457 |||||||||||||||||||| Sbjct: 126573 cttcctctttgtcttctttt 126554
>gb|AC146656.3| Otolemur garnettii clone CH256-389C8, complete sequence Length = 185109 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cttcacaaaaagaggcttcc 442 |||||||||||||||||||| Sbjct: 161763 cttcacaaaaagaggcttcc 161744
>dbj|AK217213.1| Mus musculus cDNA, clone:Y2G0141B03, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000021698, based on BLAT search Length = 402 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||||||||| ||||||| Sbjct: 210 cttcctctttgtcttccttttctt 187
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||||| |||||||||||| Sbjct: 111511 ttcctctttgttttctttttcttt 111488
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||||| |||||||||||| Sbjct: 52188 ttcctctttgttttctttttcttt 52165
>emb|BX005096.8| Zebrafish DNA sequence from clone CH211-132F13 in linkage group 20, complete sequence Length = 162987 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||||| |||||||||||| Sbjct: 152244 ttcctctttgttttctttttcttt 152221
>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205164 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 200695 ttcctctttttcttctttttcttt 200672
>gb|AC156506.4| Mus musculus 6 BAC RP24-266P6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 164284 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 128574 ttcctctttttcttctttttcttt 128597
>emb|AL118557.5|CNS01DRT Human chromosome 14 DNA sequence BAC R-1033H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214175 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tataaccacactgattttac 54 |||||||||||||||||||| Sbjct: 30373 tataaccacactgattttac 30392
>gb|U94395.1|SSU94395 Sus scrofa 90-kDa heat shock protein (hsp90) mRNA, complete cds Length = 2456 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||||||||| ||||||| Sbjct: 754 cttcctctttgtcttccttttctt 731
>gb|BC017160.1| Mus musculus cDNA clone IMAGE:4922964, containing frame-shift errors Length = 2167 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 377 ttcctctttttcttctttttcttt 354
>gb|AC111011.6| Mus musculus BAC clone RP23-424D18 from 1, complete sequence Length = 201846 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 439 ttcctctttgtcttctttttcttt 462 ||||||||| |||||||||||||| Sbjct: 131832 ttcctctttttcttctttttcttt 131855
>gb|AC139243.4| Mus musculus BAC clone RP23-440G4 from 3, complete sequence Length = 198621 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 ctttccttcagtccgtagagtgaa 338 ||||||||||||| |||||||||| Sbjct: 168350 ctttccttcagtctgtagagtgaa 168373
>emb|AL606974.9| Mouse DNA sequence from clone RP23-39E21 on chromosome 4, complete sequence Length = 232587 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 aacatgtgaccagagctaca 83 |||||||||||||||||||| Sbjct: 28271 aacatgtgaccagagctaca 28252
>gb|L33676.1|CRUHSP90A Cricetulus griseus (clone 33A) heat shock protein 90A (HSP90) mRNA, complete cds Length = 2792 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cttcctctttgtcttctttttctt 461 |||||||||| ||||||||||||| Sbjct: 757 cttcctctttatcttctttttctt 734
>dbj|D86242.1| Cucumis melo CMe-ACS2 gene for 1-aminocyclopropane-1-carboxylate synthase, complete cds Length = 3452 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 3005 tctttgtcttctttttcttt 3024
>dbj|AB006804.1| Cucumis sativus CS-ACS2 mRNA for ACC synthase, complete cds Length = 2021 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 1862 tctttgtcttctttttcttt 1881
>dbj|AB032938.1| Cucumis sativus CS-ACS2 gene for 1-aminocyclopropane-1-carboxylate synthase, complete cds Length = 5460 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 4626 tctttgtcttctttttcttt 4645
>dbj|AB032936.1| Cucumis melo CMe-ACS2 gene for 1-aminocyclopropane-1-carboxylate synthase, complete cds Length = 5075 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tctttgtcttctttttcttt 462 |||||||||||||||||||| Sbjct: 4808 tctttgtcttctttttcttt 4827
>dbj|AB009811.1| Homo sapiens gene for osteonidogen, intron 12 Length = 7019 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tataaccacactgattttac 54 |||||||||||||||||||| Sbjct: 4122 tataaccacactgattttac 4103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,783,508 Number of Sequences: 3902068 Number of extensions: 5783508 Number of successful extensions: 132536 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 132163 Number of HSP's gapped (non-prelim): 373 length of query: 529 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 506 effective length of database: 17,143,297,704 effective search space: 8674508638224 effective search space used: 8674508638224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)