ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precurs... 62 3e-10
2GLGC_LACLA (Q9CHN1) Glucose-1-phosphate adenylyltransferase (EC ... 32 1.6
3GPR37_RAT (Q9QYC6) Probable G-protein coupled receptor 37 precur... 31 3.5
4GPR37_MOUSE (Q9QY42) Probable G-protein coupled receptor 37 prec... 31 3.5
5GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 prec... 31 3.5
6CHS1_RHIRA (Q12632) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP ... 30 4.6
7RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A 30 4.6
8RPOC1_LACSA (Q56P12) DNA-directed RNA polymerase beta' chain (EC... 30 7.9
9TXK_HUMAN (P42681) Tyrosine-protein kinase TXK (EC 2.7.10.2) 30 7.9

>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)|
          Length = 411

 Score = 62.0 bits (149), Expect(2) = 3e-10
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = -3

Query: 599 KLVFEKADEMAQIFRQRIAQAEAMARADMLRFQ 501
           KLVFEKA+EMAQ FRQRIAQAEAMARADMLRFQ
Sbjct: 343 KLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQ 375



 Score = 22.3 bits (46), Expect(2) = 3e-10
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 621 GDMIRNPKAGF 589
           GDMIRNPK  F
Sbjct: 336 GDMIRNPKLVF 346



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>GLGC_LACLA (Q9CHN1) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)|
           (ADP-glucose synthase) (ADP-glucose pyrophosphorylase)
           (ADPGlc PPase)
          Length = 380

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 27/107 (25%), Positives = 47/107 (43%)
 Frame = +3

Query: 66  QQQRSFMDTHIGRGRQCAVNGVVANVRLSQPF*GD*LYMHTLFCTKWIDGFTKGIQLEYL 245
           Q Q   ++ HIG G    +NG+ + V + QP+        +   +KW +G +  +     
Sbjct: 59  QYQPLTLNAHIGNGAPWGLNGINSGVTILQPY-------SSQEGSKWFEGTSHAV----- 106

Query: 246 FGRFSAPYASYTMIQAQVDDGELSEYDMVMSSSCIHKQMNYRESLES 386
                  Y + + I     D +  EY +++S   I+K M+Y   LES
Sbjct: 107 -------YQNISYI-----DQQNPEYVLILSGDHIYK-MDYEAMLES 140



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>GPR37_RAT (Q9QYC6) Probable G-protein coupled receptor 37 precursor|
           (G-protein coupled receptor CNS1)
          Length = 603

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 130 TPLTAHCLPLPICVSIKERCCCCC 59
           TP+   CL  P   +  E CCCCC
Sbjct: 535 TPVLLFCLCRPFSRAFMECCCCCC 558



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>GPR37_MOUSE (Q9QY42) Probable G-protein coupled receptor 37 precursor|
          Length = 600

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 130 TPLTAHCLPLPICVSIKERCCCCC 59
           TP+   CL  P   +  E CCCCC
Sbjct: 532 TPVLLFCLCRPFSRAFMECCCCCC 555



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>GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 precursor|
           (Endothelin B receptor-like protein 1) (ETBR-LP-1)
           (Parkin-associated endothelin receptor-like receptor)
           (PAELR)
          Length = 613

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 130 TPLTAHCLPLPICVSIKERCCCCC 59
           TP+   CL  P   +  E CCCCC
Sbjct: 545 TPVLLFCLCKPFSRAFMECCCCCC 568



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>CHS1_RHIRA (Q12632) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 1) (Class-II chitin
           synthase 1)
          Length = 852

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +3

Query: 183 HTLFCTKWIDGFTKGIQLEYLFGRFSAPYASYTMIQAQVDDGEL--------SEYDMVMS 338
           + LFC+ W+    KGIQL     ++   Y + T  Q  + D  L        S Y + + 
Sbjct: 616 YMLFCSSWL--IYKGIQLAA--EKYDWTYDTTTNFQIAMSDPGLRNMVISLSSTYGIYLV 671

Query: 339 SSCIHKQ 359
           SSC+H+Q
Sbjct: 672 SSCLHRQ 678



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>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A|
          Length = 328

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = -3

Query: 602 RKLVFEKADEMAQIFRQ-RIAQAEAM 528
           R LV E ADEMA+IFRQ R+A+A+ +
Sbjct: 277 RDLVNEMADEMAEIFRQKRLAEAQGI 302



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>RPOC1_LACSA (Q56P12) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 689

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +2

Query: 380 GIRCILPIAPIRPWIALHPLVCL--------MTMALRCPLS*ETIHSLAGILTCRHEPLP 535
           GI+  LP+      I LHPLVC           MA+  PLS E   + A +L   H    
Sbjct: 462 GIQAFLPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEA-QAEARLLMFSH---- 516

Query: 536 LLELFSA*ISAPSHQPSQKPAFGLRIMS 619
            + L S  I  P   P+Q    GL +++
Sbjct: 517 -MNLLSPTIGDPISAPTQDMLSGLYVLT 543



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>TXK_HUMAN (P42681) Tyrosine-protein kinase TXK (EC 2.7.10.2)|
          Length = 527

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 73 CCCCCLAKRQERREGSIST 17
          CCCC + KRQ R + S+ST
Sbjct: 16 CCCCSVQKRQMRTQISLST 34


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,054,763
Number of Sequences: 219361
Number of extensions: 1990861
Number of successful extensions: 5114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5087
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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