>SIM2_HUMAN (Q14190) Single-minded homolog 2|
          Length = 667

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 94  CGLFHIIFIHQLGKGKRRKTAXHFNLLGSNRCSYNWVEFSA----KS*GSPPHCATGLEY 261
           C +FH+ + H L   K + T  ++ LL S R  + WV+  A     S  S PHC   + Y
Sbjct: 272 CDVFHLRYAHHLLLVKGQVTTKYYRLL-SKRGGWVWVQSYATVVHNSRSSRPHCIVSVNY 330

>SYM_BACTN (Q8A3M1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 679

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 579 NEFYDITEEPVLPGRHFCSFPSRESHVGTTRHCQRIPK 466
           NE  +    P+ P   F  F   +  VGT   CQ++PK
Sbjct: 560 NEEANYKANPIRPNIEFDDFTKLDIRVGTILECQKVPK 597

>SIM2_MOUSE (Q61079) Single-minded homolog 2 (SIM transcription factor) (mSIM)|
          Length = 657

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 94  CGLFHIIFIHQLGKGKRRKTAXHFNLLGSNRCSYNWVEFSA----KS*GSPPHCATGLEY 261
           C  FH+ + H L   K + T  ++ LL S    + WV+  A     S  S PHC   + Y
Sbjct: 272 CDTFHLRYAHHLLLVKGQVTTKYYRLL-SKLGGWVWVQSYATVVHNSRSSRPHCIVSVNY 330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,022,776
Number of Sequences: 219361
Number of extensions: 1609485
Number of successful extensions: 3531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3531
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)