>CT024_MOUSE (Q9CQT9) Protein C20orf24 homolog|
          Length = 129

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 21/55 (38%), Positives = 35/55 (63%)
 Frame = -2

Query: 314 FFTISTVIFHLYYAHLLKIDEEDFGGHAALIQEGLFASFTLFLLSWTLVYNLAHF 150
           F  I+  + +LY+++ L+IDEE++GG   L +EG   SF LF++ W + Y   H+
Sbjct: 74  FCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHY 128

>CT024_HUMAN (Q9BUV8) Protein C20orf24 (Rab5-interacting protein) (RIP5)|
          Length = 137

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 18/44 (40%), Positives = 30/44 (68%)
 Frame = -2

Query: 314 FFTISTVIFHLYYAHLLKIDEEDFGGHAALIQEGLFASFTLFLL 183
           F  I+  + +LY+++ L+IDEE++GG   L +EG   SF LF++
Sbjct: 74  FCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMV 117

>NUOA_BUCAP (Q8K9Y7) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain A) (NDH-1, chain A)
          Length = 126

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
 Frame = -2

Query: 533 LIKALVILDYIVFWYQLFRTIITHMTCYKL-ASEFLKSACRIRIASTPFQ*MQNALPLLS 357
           L   L + +Y+ F Y +F ++     C+ L  S FL      R  +TPF+     + + +
Sbjct: 2   LKNTLDMTEYLSFLYFIFFSLF--FCCFMLFTSWFLGGRSLSRYKNTPFE--SGVVSVGN 57

Query: 356 QIDHVAYSFFLYCRFFTISTVIFHLYYAHLLKIDEEDFGGHAALIQEGLFASFTLFLL 183
              H +  F+L   FF I  V     YA  + I E  + G        LF   +LF L
Sbjct: 58  THLHFSVKFYLIAIFFVIFDVEALYLYAWSVSIVESGWIGFVEATIFILFLLLSLFYL 115

>CLCN7_HUMAN (P51798) Chloride channel protein 7 (ClC-7)|
          Length = 805

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
 Frame = -2

Query: 515 ILDYIVFWYQLFRTIITHMTCYKLASEFLKSACRIRIASTPFQ*MQNALPLLSQIDHVAY 336
           + + + +W  +FR    H  C ++    L +A    +A       ++  PL  Q   ++Y
Sbjct: 391 VFNALNYWLTMFRIRYIHRPCLQVIEAVLVAAVTATVAFVLIYSSRDCQPL--QGGSMSY 448

Query: 335 SFFLYC---RFFTISTVIFHLYYAHLLKIDEEDFGGHAALIQEGLFASFTLFLLSWT 174
              L+C    + +++   F+     ++ +  +  G +  L   GLF     FL  WT
Sbjct: 449 PLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPLTL-GLFTLVYFFLACWT 504

>CLCN7_RAT (P51799) Chloride channel protein 7 (ClC-7)|
          Length = 803

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
 Frame = -2

Query: 515 ILDYIVFWYQLFRTIITHMTCYKLASEFLKSACRIRIASTPFQ*MQNALPLLSQIDHVAY 336
           + + + +W  +FR    H  C ++    L +A    +A       ++  PL  Q   ++Y
Sbjct: 389 VFNALNYWLTMFRIRYIHRPCLQVIEAMLVAAVTATVAFVLIYSSRDCQPL--QGSSMSY 446

Query: 335 SFFLYC---RFFTISTVIFHLYYAHLLKIDEEDFGGHAALIQEGLFASFTLFLLSWT 174
              L+C    + +++   F+     ++ +  +  G +  +   GLF     FL  WT
Sbjct: 447 PLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL-GLFTLVYFFLACWT 502

>CLCN7_MOUSE (O70496) Chloride channel protein 7 (ClC-7)|
          Length = 803

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
 Frame = -2

Query: 515 ILDYIVFWYQLFRTIITHMTCYKLASEFLKSACRIRIASTPFQ*MQNALPLLSQIDHVAY 336
           + + + +W  +FR    H  C ++    L +A    +A       ++  PL  Q   ++Y
Sbjct: 389 VFNALNYWLTMFRIRYIHRPCLQVIEAMLVAAVTATVAFVLIYSSRDCQPL--QGSSMSY 446

Query: 335 SFFLYC---RFFTISTVIFHLYYAHLLKIDEEDFGGHAALIQEGLFASFTLFLLSWT 174
              L+C    + +++   F+     ++ +  +  G +  +   GLF     FL  WT
Sbjct: 447 PLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL-GLFTLVYFFLACWT 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,317,144
Number of Sequences: 219361
Number of extensions: 1706270
Number of successful extensions: 2910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2905
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)