ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20h21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
2dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
3dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
4dbj|AK109302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
5gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 44 0.58
6gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 44 0.58
7emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 44 0.58
8dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 44 0.58
9gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 44 0.58
10gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 44 0.58
11gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 44 0.58
12dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 44 0.58
13dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 44 0.58
14emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 44 0.58
15ref|XM_466297.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
16ref|XM_506834.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 2.3
17emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in ... 42 2.3
18gb|AC069219.17| Homo sapiens 3 BAC RP11-376N7 (Roswell Park Canc... 42 2.3
19emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 42 2.3
20gb|AC128710.2| Homo sapiens 3 BAC RP11-307C21 (Roswell Park Canc... 42 2.3
21ref|XM_681077.1| PREDICTED: Danio rerio similar to Slit homolog ... 42 2.3
22ref|XM_680729.1| PREDICTED: Danio rerio similar to Slit homolog ... 42 2.3
23emb|AL592562.18| Zebrafish DNA sequence from clone XX-85C7 in li... 42 2.3
24gb|AC158319.1| Homo sapiens chromosome 3 clone WI2-1267B16, comp... 42 2.3
25emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in... 42 2.3
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
27dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
28dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
29dbj|AK120966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
30dbj|AK071355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
31emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, c... 42 2.3
32emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 42 2.3
33gb|AC092716.7| Mus musculus chromosome 5, clone RP23-14J20, comp... 40 9.0
34gb|BT017124.1| Zea mays clone EL01N0364H02.c mRNA sequence 40 9.0
35gb|AC138289.8| Mus musculus chromosome 1, clone RP24-329K3, comp... 40 9.0
36ref|XM_459912.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 9.0
37gb|AF438483.1| Azospirillum brasilense cell-shape determining pr... 40 9.0
38gb|AC131656.3| Mus musculus BAC clone RP23-233K19 from chromosom... 40 9.0
39gb|AC005158.3| Homo sapiens BAC clone GS1-250N6 from 7, complete... 40 9.0
40emb|AL441963.7| Human DNA sequence from clone RP11-280O24 on chr... 40 9.0
41gb|AC114600.4| Mus musculus chromosome 5, clone RP23-332O18, com... 40 9.0
42emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 9.0
43gb|AC079601.25| Homo sapiens 12 BAC RP11-328C8 (Roswell Park Can... 40 9.0
44emb|CR376785.10| Zebrafish DNA sequence from clone CH211-266K8 i... 40 9.0
45gb|AC114969.2| Homo sapiens chromosome 5 clone RP11-356D23, comp... 40 9.0
46gb|AC103586.3| Homo sapiens chromosome 3 clone RP11-79P21, compl... 40 9.0
47gb|AC084795.5| Homo sapiens chromosome 16 clone CTD-2007P3, comp... 40 9.0
48gb|AC007909.8| Homo sapiens chromosome 16 clone RP11-515G11, com... 40 9.0
49gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.0
50gb|AC069298.8|AC069298 Homo sapiens chromosome 3 clone RP11-56K2... 40 9.0
51gb|AY516537.1| Homo sapiens clone MLV-HeLa-683 MLV integration site 40 9.0
52dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
53emb|BX647682.1|HSM807828 Homo sapiens mRNA; cDNA DKFZp686K12112 ... 40 9.0
54emb|BX537249.8| Zebrafish DNA sequence from clone DKEY-77B17 in ... 40 9.0
55gb|AY109024.1| Zea mays PCO106891 mRNA sequence 40 9.0
56dbj|AP002852.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.0
57emb|AL731789.9| Mouse DNA sequence from clone RP23-52F6 on chrom... 40 9.0 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 128/157 (81%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                            
Query: 506      cgcctccatctgtaagtctgcagagggtccactgcacgaggctttgctgaaggatgcttc 565
                ||||||||||||||||| || | ||||||||| | | |||||||  ||||||||||||||
Sbjct: 16891011 cgcctccatctgtaagtatgtacagggtccacagaatgaggcttcactgaaggatgcttc 16891070

                                                                            
Query: 566      tttcgtgcgtgcctgcagagttctcttgtacgtaccgctgtatgagcagccatcttgcat 625
                |||| | | ||| ||||||| ||||   ||  ||||  |||||||||| |||||||||||
Sbjct: 16891071 tttcttacatgcttgcagagctctc-cataactacccatgtatgagcaaccatcttgcat 16891129

                                                     
Query: 626      gcaggtcctcctgtttctgtttagctgctcccgagca 662
                 ||| ||||| |||||  ||| | ||| |||||||||
Sbjct: 16891130 acagctcctcttgttttggttcaactgttcccgagca 16891166
to top
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 128/157 (81%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                         
Query: 506   cgcctccatctgtaagtctgcagagggtccactgcacgaggctttgctgaaggatgcttc 565
             ||||||||||||||||| || | ||||||||| | | |||||||  ||||||||||||||
Sbjct: 20824 cgcctccatctgtaagtatgtacagggtccacagaatgaggcttcactgaaggatgcttc 20883

                                                                         
Query: 566   tttcgtgcgtgcctgcagagttctcttgtacgtaccgctgtatgagcagccatcttgcat 625
             |||| | | ||| ||||||| ||||   ||  ||||  |||||||||| |||||||||||
Sbjct: 20884 tttcttacatgcttgcagagctctc-cataactacccatgtatgagcaaccatcttgcat 20942

                                                  
Query: 626   gcaggtcctcctgtttctgtttagctgctcccgagca 662
              ||| ||||| |||||  ||| | ||| |||||||||
Sbjct: 20943 acagctcctcttgttttggttcaactgttcccgagca 20979
to top
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1163_C07
          Length = 107121

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 128/157 (81%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                         
Query: 506   cgcctccatctgtaagtctgcagagggtccactgcacgaggctttgctgaaggatgcttc 565
             ||||||||||||||||| || | ||||||||| | | |||||||  ||||||||||||||
Sbjct: 88702 cgcctccatctgtaagtatgtacagggtccacagaatgaggcttcactgaaggatgcttc 88761

                                                                         
Query: 566   tttcgtgcgtgcctgcagagttctcttgtacgtaccgctgtatgagcagccatcttgcat 625
             |||| | | ||| ||||||| ||||   ||  ||||  |||||||||| |||||||||||
Sbjct: 88762 tttcttacatgcttgcagagctctc-cataactacccatgtatgagcaaccatcttgcat 88820

                                                  
Query: 626   gcaggtcctcctgtttctgtttagctgctcccgagca 662
              ||| ||||| |||||  ||| | ||| |||||||||
Sbjct: 88821 acagctcctcttgttttggttcaactgttcccgagca 88857
to top
>dbj|AK109302.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E01, full
           insert sequence
          Length = 1189

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 127/157 (80%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                       
Query: 506 cgcctccatctgtaagtctgcagagggtccactgcacgaggctttgctgaaggatgcttc 565
           ||||||||||||||||| || | ||||||||| | | |||||||  ||||||||||||||
Sbjct: 658 cgcctccatctgtaagtatgtacagggtccacagaatgaggcttcactgaaggatgcttc 599

                                                                       
Query: 566 tttcgtgcgtgcctgcagagttctcttgtacgtaccgctgtatgagcagccatcttgcat 625
           |||| | | ||| ||||||| || |   ||  ||||  |||||||||| |||||||||||
Sbjct: 598 tttcttacatgcttgcagagctc-cccataactacccatgtatgagcaaccatcttgcat 540

                                                
Query: 626 gcaggtcctcctgtttctgtttagctgctcccgagca 662
            ||| ||||| |||||  ||| | ||| |||||||||
Sbjct: 539 acagctcctcttgttttggttcaactgttcccgagca 503
to top
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 449     agcgttgacgagcttgtcgcacagat 474
               ||||||||||||||||||| ||||||
Sbjct: 1850663 agcgttgacgagcttgtcgaacagat 1850688
to top
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 449     agcgttgacgagcttgtcgcacagat 474
               ||||||||||||||||||| ||||||
Sbjct: 1851513 agcgttgacgagcttgtcgaacagat 1851538
to top
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 461688 atattttagaagaaaatgttat 461709
to top
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 502250 atattttagaagaaaatgttat 502271
to top
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 500646 atattttagaagaaaatgttat 500667
to top
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 420320 atattttagaagaaaatgttat 420341
to top
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 484390 atattttagaagaaaatgttat 484411
to top
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 463026 atattttagaagaaaatgttat 463047
to top
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 477735 atattttagaagaaaatgttat 477756
to top
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     atattttagaagaaaatgttat 32
              ||||||||||||||||||||||
Sbjct: 444688 atattttagaagaaaatgttat 444709
to top
>ref|XM_466297.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1673

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 540 cacgaggctttgctgaaggatgctt 564
           ||||||| |||||||||||||||||
Sbjct: 716 cacgaggttttgctgaaggatgctt 692
to top
>ref|XM_506834.1| PREDICTED Oryza sativa (japonica cultivar-group), P0020C11.43 mRNA
          Length = 1775

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 540 cacgaggctttgctgaaggatgctt 564
           ||||||| |||||||||||||||||
Sbjct: 721 cacgaggttttgctgaaggatgctt 697
to top
>emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in linkage group 3,
             complete sequence
          Length = 59444

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 310   caaagaccacagaccagcaaa 330
             |||||||||||||||||||||
Sbjct: 15486 caaagaccacagaccagcaaa 15466
to top
>gb|AC069219.17| Homo sapiens 3 BAC RP11-376N7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 55474

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     aattgcatattttagaagaaa 25
             |||||||||||||||||||||
Sbjct: 27930 aattgcatattttagaagaaa 27910
to top
>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
              complete sequence
          Length = 197042

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 310    caaagaccacagaccagcaaa 330
              |||||||||||||||||||||
Sbjct: 121414 caaagaccacagaccagcaaa 121434
to top
>gb|AC128710.2| Homo sapiens 3 BAC RP11-307C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 135514

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     aattgcatattttagaagaaa 25
             |||||||||||||||||||||
Sbjct: 26903 aattgcatattttagaagaaa 26883
to top
>ref|XM_681077.1| PREDICTED: Danio rerio similar to Slit homolog 3 protein precursor
           (Slit-3) (Slit3) (LOC557922), mRNA
          Length = 1041

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 310 caaagaccacagaccagcaaa 330
           |||||||||||||||||||||
Sbjct: 228 caaagaccacagaccagcaaa 208
to top
>ref|XM_680729.1| PREDICTED: Danio rerio similar to Slit homolog 3 protein precursor
           (Slit-3) (Slit3) (LOC557635), mRNA
          Length = 1041

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 310 caaagaccacagaccagcaaa 330
           |||||||||||||||||||||
Sbjct: 228 caaagaccacagaccagcaaa 208
to top
>emb|AL592562.18| Zebrafish DNA sequence from clone XX-85C7 in linkage group 19, complete
             sequence
          Length = 94129

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    acaccagacaaaatggacaga 101
             |||||||||||||||||||||
Sbjct: 29641 acaccagacaaaatggacaga 29661
to top
>gb|AC158319.1| Homo sapiens chromosome 3 clone WI2-1267B16, complete sequence
          Length = 35497

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 5    aattgcatattttagaagaaa 25
            |||||||||||||||||||||
Sbjct: 7794 aattgcatattttagaagaaa 7814
to top
>emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in linkage group 19,
             complete sequence
          Length = 217898

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    acaccagacaaaatggacaga 101
             |||||||||||||||||||||
Sbjct: 53397 acaccagacaaaatggacaga 53417
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 540      cacgaggctttgctgaaggatgctt 564
                ||||||| |||||||||||||||||
Sbjct: 21550049 cacgaggttttgctgaaggatgctt 21550073



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 52       aagngggatgcacaagaacagtg 74
                ||| |||||||||||||||||||
Sbjct: 33512387 aagggggatgcacaagaacagtg 33512365
to top
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 540   cacgaggctttgctgaaggatgctt 564
             ||||||| |||||||||||||||||
Sbjct: 38999 cacgaggttttgctgaaggatgctt 39023
to top
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0020C11
          Length = 163328

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 540    cacgaggctttgctgaaggatgctt 564
              ||||||| |||||||||||||||||
Sbjct: 144976 cacgaggttttgctgaaggatgctt 145000
to top
>dbj|AK120966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040F07, full
           insert sequence
          Length = 1675

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 540 cacgaggctttgctgaaggatgctt 564
           ||||||| |||||||||||||||||
Sbjct: 718 cacgaggttttgctgaaggatgctt 694
to top
>dbj|AK071355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091H20, full
           insert sequence
          Length = 1775

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 540 cacgaggctttgctgaaggatgctt 564
           ||||||| |||||||||||||||||
Sbjct: 721 cacgaggttttgctgaaggatgctt 697
to top
>emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, complete sequence
          Length = 160710

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 310    caaagaccacagaccagcaaa 330
              |||||||||||||||||||||
Sbjct: 103640 caaagaccacagaccagcaaa 103620
to top
>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
             sequence
          Length = 204214

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    acaagaacagtgcatcacaca 83
             |||||||||||||||||||||
Sbjct: 98379 acaagaacagtgcatcacaca 98359
to top
>gb|AC092716.7| Mus musculus chromosome 5, clone RP23-14J20, complete sequence
          Length = 215382

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    agaccagcaaagtccacagt 339
              ||||||||||||||||||||
Sbjct: 172522 agaccagcaaagtccacagt 172503
to top
>gb|BT017124.1| Zea mays clone EL01N0364H02.c mRNA sequence
          Length = 885

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 126/160 (78%), Gaps = 1/160 (0%)
 Strand = Plus / Minus

                                                                       
Query: 503 agccgcctccatctgtaagtctgcagagggtccactgcacgaggctttgctgaaggatgc 562
           |||||| ||||||||||||  ||||  |||||||| || || || ||||| | ||| |||
Sbjct: 424 agccgcttccatctgtaagcatgcaaggggtccacagctcgtgggtttgcagtagggtgc 365

                                                                       
Query: 563 ttctttcgtgcgtgcctgcagagttctcttgtacgtaccgctgtatgagcagccatcttg 622
           |||||| |  | ||| ||||||| |||| |||| || ||  |||| || ||||| |||| 
Sbjct: 364 ttcttttggacatgcttgcagagctctc-tgtatgtgcccatgtacgaacagccgtcttc 306

                                                   
Query: 623 catgcaggtcctcctgtttctgtttagctgctcccgagca 662
           ||||||| ||||||| || |  || ||||||| |||||||
Sbjct: 305 catgcagctcctcctcttgcgattcagctgcttccgagca 266
to top
>gb|AC138289.8| Mus musculus chromosome 1, clone RP24-329K3, complete sequence
          Length = 168668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 422    tgcaacatggtagacaacaatcct 445
              ||||||||||||||||| ||||||
Sbjct: 125158 tgcaacatggtagacaagaatcct 125135
to top
>ref|XM_459912.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E14509g)
            partial mRNA
          Length = 1938

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 407  agaagctcctcaaactgcaa 426
            ||||||||||||||||||||
Sbjct: 1771 agaagctcctcaaactgcaa 1790
to top
>gb|AF438483.1| Azospirillum brasilense cell-shape determining protein MreB (mreB)
            gene, complete cds
          Length = 2012

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 371  ccaaggtgctcatcatctcc 390
            ||||||||||||||||||||
Sbjct: 1430 ccaaggtgctcatcatctcc 1449
to top
>gb|AC131656.3| Mus musculus BAC clone RP23-233K19 from chromosome 17, complete sequence
          Length = 184763

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 607    atgagcagccatcttgcatg 626
              ||||||||||||||||||||
Sbjct: 128725 atgagcagccatcttgcatg 128706
to top
>gb|AC005158.3| Homo sapiens BAC clone GS1-250N6 from 7, complete sequence
          Length = 266344

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     catattttagaagaaaatgt 29
              ||||||||||||||||||||
Sbjct: 221655 catattttagaagaaaatgt 221674
to top
>emb|AL441963.7| Human DNA sequence from clone RP11-280O24 on chromosome 9 Contains a
             ATP synthase, H+ transporting, mitochondrial F0 complex,
             subunit d (ATP5H) (ATPQ, ATP5JD) pseudogene, the 3' end of
             the NFIB gene for nuclear factor I/B (NFIB2, NFIB3,
             NFI-RED) and a ribosomal protein L7a (RPL7A) pseudogene,
             complete sequence
          Length = 159476

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tattttagaagaaaatgtta 31
             ||||||||||||||||||||
Sbjct: 55850 tattttagaagaaaatgtta 55831
to top
>gb|AC114600.4| Mus musculus chromosome 5, clone RP23-332O18, complete sequence
          Length = 203401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  agaccagcaaagtccacagt 339
            ||||||||||||||||||||
Sbjct: 3223 agaccagcaaagtccacagt 3204
to top
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
               hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 407     agaagctcctcaaactgcaa 426
               ||||||||||||||||||||
Sbjct: 1093900 agaagctcctcaaactgcaa 1093919
to top
>gb|AC079601.25| Homo sapiens 12 BAC RP11-328C8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96201

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 638   gtttctgtttagctgctccc 657
             ||||||||||||||||||||
Sbjct: 61924 gtttctgtttagctgctccc 61943
to top
>emb|CR376785.10| Zebrafish DNA sequence from clone CH211-266K8 in linkage group 25,
             complete sequence
          Length = 173989

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    attttagaagaaaatgttat 32
             ||||||||||||||||||||
Sbjct: 77580 attttagaagaaaatgttat 77561
to top
>gb|AC114969.2| Homo sapiens chromosome 5 clone RP11-356D23, complete sequence
          Length = 164526

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 544   aggctttgctgaaggatgct 563
             ||||||||||||||||||||
Sbjct: 93949 aggctttgctgaaggatgct 93968
to top
>gb|AC103586.3| Homo sapiens chromosome 3 clone RP11-79P21, complete sequence
          Length = 174912

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   ttgacgagcttgtcgcacag 472
             ||||||||||||||||||||
Sbjct: 87990 ttgacgagcttgtcgcacag 87971
to top
>gb|AC084795.5| Homo sapiens chromosome 16 clone CTD-2007P3, complete sequence
          Length = 132262

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   cacagtggccatttacactg 353
             ||||||||||||||||||||
Sbjct: 64134 cacagtggccatttacactg 64115
to top
>gb|AC007909.8| Homo sapiens chromosome 16 clone RP11-515G11, complete sequence
          Length = 183149

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    cacagtggccatttacactg 353
              ||||||||||||||||||||
Sbjct: 157461 cacagtggccatttacactg 157442
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     ggtgctcatcatctccacgc 394
               ||||||||||||||||||||
Sbjct: 4778782 ggtgctcatcatctccacgc 4778801
to top
>gb|AC069298.8|AC069298 Homo sapiens chromosome 3 clone RP11-56K23, complete sequence
          Length = 158073

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    ttgacgagcttgtcgcacag 472
              ||||||||||||||||||||
Sbjct: 125956 ttgacgagcttgtcgcacag 125937
to top
>gb|AY516537.1| Homo sapiens clone MLV-HeLa-683 MLV integration site
          Length = 156

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 cacagtggccatttacactg 353
           ||||||||||||||||||||
Sbjct: 147 cacagtggccatttacactg 128
to top
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0054K20
          Length = 153584

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 52    aagngggatgcacaagaacagtg 74
             ||| |||||||||||||||||||
Sbjct: 87262 aagggggatgcacaagaacagtg 87240
to top
>emb|BX647682.1|HSM807828 Homo sapiens mRNA; cDNA DKFZp686K12112 (from clone DKFZp686K12112)
          Length = 5552

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 453  ttgacgagcttgtcgcacag 472
            ||||||||||||||||||||
Sbjct: 1891 ttgacgagcttgtcgcacag 1910
to top
>emb|BX537249.8| Zebrafish DNA sequence from clone DKEY-77B17 in linkage group 20,
            complete sequence
          Length = 92426

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    ttgcatattttagaagaaaa 26
            ||||||||||||||||||||
Sbjct: 4334 ttgcatattttagaagaaaa 4315
to top
>gb|AY109024.1| Zea mays PCO106891 mRNA sequence
          Length = 1049

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 126/160 (78%), Gaps = 1/160 (0%)
 Strand = Plus / Minus

                                                                       
Query: 503 agccgcctccatctgtaagtctgcagagggtccactgcacgaggctttgctgaaggatgc 562
           |||||| ||||||||||||  ||||  |||||||| || || || ||||| | ||| |||
Sbjct: 545 agccgcttccatctgtaagcatgcaaggggtccacagctcgtgggtttgcagtagggtgc 486

                                                                       
Query: 563 ttctttcgtgcgtgcctgcagagttctcttgtacgtaccgctgtatgagcagccatcttg 622
           |||||| |  | ||| ||||||| |||| |||| || ||  |||| || ||||| |||| 
Sbjct: 485 ttcttttggacatgcttgcagagctctc-tgtatgtgcccatgtacgaacagccgtcttc 427

                                                   
Query: 623 catgcaggtcctcctgtttctgtttagctgctcccgagca 662
           ||||||| ||||||| || |  || ||||||| |||||||
Sbjct: 426 catgcagctcctcctcttgcgattcagctgcttccgagca 387
to top
>dbj|AP002852.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1980E6
          Length = 155902

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   cacagtggccatttacactg 353
             ||||||||||||||||||||
Sbjct: 45862 cacagtggccatttacactg 45881
to top
>emb|AL731789.9| Mouse DNA sequence from clone RP23-52F6 on chromosome X, complete
             sequence
          Length = 218939

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     attgcatattttagaagaaa 25
             ||||||||||||||||||||
Sbjct: 55392 attgcatattttagaagaaa 55411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,634,473
Number of Sequences: 3902068
Number of extensions: 5634473
Number of successful extensions: 134697
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134291
Number of HSP's gapped (non-prelim): 408
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top