>ref|XM_724123.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01450)
            partial mRNA
          Length = 1998

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 42   aacgaaatatgatgaaacaaaaa 64
            |||||||||||||||||||||||
Sbjct: 1659 aacgaaatatgatgaaacaaaaa 1681

>gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, complete sequence
          Length = 195428

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   caaagaactagaggtcttgga 239
             |||||||||||||||||||||
Sbjct: 71378 caaagaactagaggtcttgga 71398

>gb|AC079768.8| Homo sapiens BAC clone RP11-205M3 from 4, complete sequence
          Length = 134004

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     atgatgaaacaaaaaattcca 70
              |||||||||||||||||||||
Sbjct: 110090 atgatgaaacaaaaaattcca 110110

>dbj|AB073400.1| Brassica napus mitochondrial linear plasmid DNA, complete sequence
          Length = 11640

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 46    aaatatgatgaaacaaaaaat 66
             |||||||||||||||||||||
Sbjct: 11255 aaatatgatgaaacaaaaaat 11235

>gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome 16, complete sequence
          Length = 182658

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   acagactcagatgacacaca 156
             ||||||||||||||||||||
Sbjct: 96729 acagactcagatgacacaca 96748

>gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromosome 12 centromeric
              region
          Length = 326112

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    acacacataagcaaataaaa 169
              ||||||||||||||||||||
Sbjct: 208660 acacacataagcaaataaaa 208641

>ref|XM_823013.1| Trypanosoma brucei TREU927 variant surface glycoprotein
            (Tb11.51.0005) partial mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   aaatatgatgaaacaaaaaa 65
            ||||||||||||||||||||
Sbjct: 1249 aaatatgatgaaacaaaaaa 1268

>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence
          Length = 205764

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    acatagaaaaatagaacaga 141
              ||||||||||||||||||||
Sbjct: 135129 acatagaaaaatagaacaga 135110

>gb|AC084438.5| Homo sapiens BAC clone RP11-89D15 from 7, complete sequence
          Length = 133439

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   cacataagcaaataaaagcaaaca 176
             |||||||||||||||||| |||||
Sbjct: 35930 cacataagcaaataaaagtaaaca 35953

>ref|XM_664468.1| Plasmodium berghei strain ANKA hypothetical protein
          (PB100014.00.0) partial mRNA
          Length = 145

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 46 aaatatgatgaaacaaaaaa 65
          ||||||||||||||||||||
Sbjct: 84 aaatatgatgaaacaaaaaa 65

>emb|CR956417.1| Pig DNA sequence from clone CH242-300K12 on chromosome 17, complete
             sequence
          Length = 176004

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   ataagcaaataaaagcaaac 175
             ||||||||||||||||||||
Sbjct: 34130 ataagcaaataaaagcaaac 34149

>emb|Z99569.1|HS106H14 Human DNA sequence from clone RP1-106H14 on chromosome Xq21.1-21.33
             Contains a CpG island, complete sequence
          Length = 80730

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   acatagaaaaatagaacaga 141
             ||||||||||||||||||||
Sbjct: 55777 acatagaaaaatagaacaga 55758

>emb|AL590422.15| Human DNA sequence from clone RP11-444D13 on chromosome 1 Contains part
             of the RGL1 gene for ral guanine nucleotide dissociation
             stimulator-like 1 and a novel gene, complete sequence
          Length = 198312

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   taagcaaataaaagcaaaca 176
             ||||||||||||||||||||
Sbjct: 33853 taagcaaataaaagcaaaca 33834

>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     aaatatgatgaaacaaaaaa 65
              ||||||||||||||||||||
Sbjct: 182370 aaatatgatgaaacaaaaaa 182351

>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 76      atttattctgattggtacaa 95
               ||||||||||||||||||||
Sbjct: 1623940 atttattctgattggtacaa 1623959

>emb|AL669833.7| Mouse DNA sequence from clone RP23-51C16 on chromosome 11, complete
             sequence
          Length = 48352

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   acatagaaaaatagaacaga 141
             ||||||||||||||||||||
Sbjct: 20066 acatagaaaaatagaacaga 20085

>gb|AC116315.2| Homo sapiens chromosome 1 clone RP11-211J9, complete sequence
          Length = 154057

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  cacataagcaaataaaagca 172
            ||||||||||||||||||||
Sbjct: 6776 cacataagcaaataaaagca 6757

>emb|BX248392.16| Zebrafish DNA sequence from clone CH211-220F12 in linkage group 18,
              complete sequence
          Length = 183594

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    aacatagaaaaatagaacag 140
              ||||||||||||||||||||
Sbjct: 182373 aacatagaaaaatagaacag 182354

>gb|AC104458.2| Homo sapiens chromosome 1 clone RP5-1102E8, complete sequence
          Length = 135063

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   cacataagcaaataaaagca 172
             ||||||||||||||||||||
Sbjct: 81579 cacataagcaaataaaagca 81560

>gb|AC133597.5| Mus musculus BAC clone RP24-313B5 from chromosome 16, complete sequence
          Length = 192699

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    acagactcagatgacacaca 156
              ||||||||||||||||||||
Sbjct: 192537 acagactcagatgacacaca 192518

>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   acatagaaaaatagaacaga 141
             ||||||||||||||||||||
Sbjct: 82773 acatagaaaaatagaacaga 82792

>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence
          Length = 132623

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   acatagaaaaatagaacaga 141
             ||||||||||||||||||||
Sbjct: 32997 acatagaaaaatagaacaga 33016

>gb|AC155723.6| Mus musculus 6 BAC RP24-131B7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183349

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 58     acaaaaaattccacccaaatttattctg 85
              |||||| |||||||||||| ||||||||
Sbjct: 100017 acaaaacattccacccaaacttattctg 99990

>gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, complete sequence
          Length = 118955

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  acatagaaaaatagaacaga 141
            ||||||||||||||||||||
Sbjct: 5899 acatagaaaaatagaacaga 5880

>emb|BX470142.4| Zebrafish DNA sequence from clone CH211-59C17 in linkage group 18,
             complete sequence
          Length = 58289

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   aacatagaaaaatagaacag 140
             ||||||||||||||||||||
Sbjct: 40813 aacatagaaaaatagaacag 40832

>emb|AL954182.18| Zebrafish DNA sequence from clone CH211-205N18 in linkage group 20,
              complete sequence
          Length = 151552

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    aagcaaataaaagcaaacaa 177
              ||||||||||||||||||||
Sbjct: 126303 aagcaaataaaagcaaacaa 126322

>emb|BX276107.12| Zebrafish DNA sequence from clone CH211-218C17 in linkage group 18,
           complete sequence
          Length = 46296

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 aacatagaaaaatagaacag 140
           ||||||||||||||||||||
Sbjct: 779 aacatagaaaaatagaacag 760


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,728,496
Number of Sequences: 3902068
Number of extensions: 3728496
Number of successful extensions: 83866
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83806
Number of HSP's gapped (non-prelim): 60
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)