ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20h05 |
|---|---|
| Clone Library Name | barley_pub |
>NIFE_ANASP (Q44144) Nitrogenase iron-molybdenum cofactor biosynthesis protein| nifE Length = 480 Score = 31.2 bits (69), Expect = 2.8 Identities = 24/97 (24%), Positives = 41/97 (42%) Frame = -1 Query: 586 LDFIVSTASDVFLPTYDGNMAKLVEGHRRFLGFRKSVLPDRRKLVELIDLYTNKTISWEN 407 LD++V TA + YD N+ G G VLP L+E + + I+ + Sbjct: 179 LDYVVGTAEPEYTTPYDINLI----GEYNIAGEMWGVLP----LLEKLGIRVLSKITGDA 230 Query: 406 FTSSVQEVHRGRVVQPSCRRKLENKPKEEDYFYSNPH 296 ++ HR ++ C R L N ++ + Y P+ Sbjct: 231 RFEEIRYAHRAKLNVMICSRALLNMARKMEENYGIPY 267
>NCAP_MEASY (P26030) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 525 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 78 NEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHR 218 N+ I++++ + P+ +N LGT++ + W L A +P +S L R Sbjct: 149 NKEISDIEVQDPEGFNMILGTILAQIWVLLAKAVTAPDTAADSELRR 195
>NCAP_MEASM (Q77M43) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 525 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 78 NEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHR 218 N+ I++++ + P+ +N LGT++ + W L A +P +S L R Sbjct: 149 NKEISDIEVQDPEGFNMILGTILAQIWVLLAKAVTAPDTAADSELRR 195
>NCAP_MEASI (P26029) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 525 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 78 NEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHR 218 N+ I++++ + P+ +N LGT++ + W L A +P +S L R Sbjct: 149 NKEISDIEVQDPEGFNMILGTILAQIWVLLAKAVTAPDTAADSELRR 195
>NCAP_MEASH (P10050) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 525 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 78 NEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHR 218 N+ I++++ + P+ +N LGT++ + W L A +P +S L R Sbjct: 149 NKEISDIEVQDPEGFNMILGTILAQIWVLVAKAVTAPDTAADSELRR 195
>NCAP_MEASF (Q89933) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 525 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 78 NEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHR 218 N+ I++++ + P+ +N LGT++ + W L A +P +S L R Sbjct: 149 NKEISDIEVQDPEGFNMILGTILAQIWVLLAKAVTAPDTAADSELRR 195
>NCAP_MEASA (P35972) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 525 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 78 NEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHR 218 N+ I++++ + P+ +N LGT++ + W L A +P +S L R Sbjct: 149 NKEISDIEVQDPEGFNMILGTILAQIWVLLAKAVTAPDTAADSELRR 195
>NCAP_MEASE (P04851) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 523 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 78 NEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHR 218 N+ I++++ + P+ +N LGT++ + W L A +P +S L R Sbjct: 149 NKEISDIEVQDPEGFNMILGTILAQIWVLLAKAVTAPDTAADSELRR 195
>HPRK_MYCGE (P47331) HPr kinase/phosphorylase (EC 2.7.11.-) (EC 2.7.4.-)| (HPrK/P) (HPr(Ser) kinase/phosphorylase) Length = 311 Score = 30.0 bits (66), Expect = 6.2 Identities = 20/60 (33%), Positives = 31/60 (51%) Frame = +3 Query: 396 EDVKFSQEIVLLVYKSISSTSFRRSGNTLFRKPRNLLWPSTSFAMLPS*VGRKTSLAVDT 575 E + I LL + ++ SF R G+ L K +NLL S+ +P GRKTS +++ Sbjct: 222 EQTEIQLAISLLSLEEKNNASFERLGSDL--KLKNLLGVKISYYQIPISSGRKTSEIIES 279
>UBIE_CAUCR (Q9A258) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 252 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -1 Query: 520 LVEGHRRFLGFRKSVLPDRRKLVELIDLYTNKTISWENFTSSVQEVHRG 374 LVE RRF PD+R +I+ K +++ NFT V +H+G Sbjct: 209 LVESIRRF--------PDQRTFAGMIEAAGFKRVTFTNFTGGVAALHQG 249
>ELO3_YEAST (P40319) Elongation of fatty acids protein 3 (SUR4 protein) (SRE1| protein) (v-SNARE bypass mutant gene 1 protein) Length = 345 Score = 30.0 bits (66), Expect = 6.2 Identities = 21/78 (26%), Positives = 38/78 (48%) Frame = +3 Query: 66 SLNINEWIAELKEEKPDLYNRTLGTLVRRSWGLCPNAGFSPRIITNSNLHRRGGKCAHLT 245 S+++ W+ L++ P +Y+ L W +C F+P+++T L+ K L Sbjct: 117 SISLVLWLLMLEQLVPMVYHNGL------FWSICSKEAFAPKLVTLYYLNYL-TKFVELI 169 Query: 246 VTVFLVPLHRLELAKHSW 299 TVFLV + L H++ Sbjct: 170 DTVFLVLRRKKLLFLHTY 187
>UTP11_DROME (Q9W3C0) Probable U3 small nucleolar RNA-associated protein 11 (U3| snoRNA-associated protein 11) Length = 237 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -1 Query: 418 SWENFTSSVQEVHRGRVVQPSCRRKLENKPKEEDY 314 SW+N + S Q+VHR R QP R+ L K++DY Sbjct: 3 SWKNASKSNQKVHRER-HQPESRQHLGFLEKKKDY 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,918,572 Number of Sequences: 219361 Number of extensions: 2054876 Number of successful extensions: 5541 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5541 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
