ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 9e-77
2ref|XM_470295.1| Oryza sativa (japonica cultivar-group), mRNA 291 1e-75
3dbj|AK107189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 2e-74
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 153 9e-34
5gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 geno... 153 9e-34
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 153 9e-34
7ref|NM_111092.3| Arabidopsis thaliana unknown protein AT3G02250 ... 50 0.009
8gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC... 50 0.009
9gb|AY056304.1| Arabidopsis thaliana putative auxin-independent g... 50 0.009
10gb|AY140026.1| Arabidopsis thaliana putative auxin-independent g... 50 0.009
11emb|BX823979.1|CNS0A7F7 Arabidopsis thaliana Full-length cDNA Co... 50 0.009
12gb|AY084929.1| Arabidopsis thaliana clone 121858 mRNA, complete ... 50 0.009
13ref|NM_121579.3| Arabidopsis thaliana unknown protein AT5G15740 ... 46 0.14
14gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 46 0.14
15emb|AL391144.1|ATF14F8 Arabidopsis thaliana DNA chromosome 5, BA... 46 0.14
16dbj|AK220896.1| Arabidopsis thaliana mRNA for hypothetical prote... 46 0.14
17gb|BT023458.1| Arabidopsis thaliana At5g15740 gene, complete cds 46 0.14
18emb|BX832033.1|CNS0A1Q0 Arabidopsis thaliana Full-length cDNA Co... 46 0.14
19gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, com... 44 0.57
20gb|AC124699.4| Mus musculus BAC clone RP24-187B13 from chromosom... 44 0.57
21gb|AC098686.11| Bos taurus clone rp42-146c17, complete sequence 44 0.57
22dbj|AK034366.1| Mus musculus adult male diencephalon cDNA, RIKEN... 44 0.57
23emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 44 0.57
24ref|XM_483711.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
25gb|AC182667.2| Populus trichocarpa clone Pop1-18L12, complete se... 42 2.2
26dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
27dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
28dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
29gb|AF065472.1|AF065472 Hydra vulgaris non-receptor protein-tyros... 42 2.2
30gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.9
31gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 40 8.9
32gb|AC152826.2| Mus musculus BAC clone RP23-111C21 from chromosom... 40 8.9
33gb|AC166357.3| Mus musculus BAC clone RP23-360N1 from chromosome... 40 8.9
34gb|AC116569.6| Mus musculus BAC clone RP23-59O19 from chromosome... 40 8.9
35gb|AC102806.18| Mus musculus chromosome 3, clone RP23-341B15, co... 40 8.9
36gb|AC073072.11| Homo sapiens BAC clone RP11-240H8 from 7, comple... 40 8.9
37gb|AC118561.10| Mus musculus chromosome 12, clone RP23-265N17, c... 40 8.9
38emb|AL034488.2|CEY54G11A Caenorhabditis elegans YAC Y54G11A, com... 40 8.9
39ref|XM_845746.1| PREDICTED: Canis familiaris similar to otoancor... 40 8.9
40ref|XM_765160.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 8.9
41emb|AL139424.21| Human DNA sequence from clone RP4-736L20 on chr... 40 8.9
42dbj|AK092111.1| Homo sapiens cDNA FLJ34792 fis, clone NT2NE2005419 40 8.9
43gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complet... 40 8.9
44gb|AC156568.3| Mus musculus BAC clone RP23-291D3 from chromosome... 40 8.9
45gb|AC159265.2| Mus musculus BAC clone RP23-462H20 from chromosom... 40 8.9
46gb|AC093048.1| Drosophila melanogaster, chromosome 2L, region 36... 40 8.9
47gb|AC024614.5|AC024614 Homo sapiens chromosome 17, clone RP11-11... 40 8.9
48ref|NM_064573.2| Caenorhabditis elegans Serpentine Receptor, cla... 40 8.9
49dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
50gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 8.9
51emb|AJ299462.1|HEA299462 Hepatitis A virus partial VP1 and P2A g... 40 8.9
52gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67... 40 8.9
53gb|AC006471.1|AC006471 Drosophila melanogaster, chromosome 2L, r... 40 8.9
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.9
55emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 40 8.9 
>dbj|AK064675.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F02, full
           insert sequence
          Length = 1689

 Score =  295 bits (149), Expect = 9e-77
 Identities = 320/377 (84%)
 Strand = Plus / Minus

                                                                       
Query: 234 gctcaccttacagtgactgtattcttggttccactgcacaggcttgaattggccaagcac 293
           |||||||||||| ||| || || ||||||||  ||||| |  ||||||||||||| ||| 
Sbjct: 467 gctcaccttacactgattgcatccttggttcggctgcaaaatcttgaattggccaggcat 408

                                                                       
Query: 294 tcatgggggttagaatagaagtaatcctcctctttcggcttgttttcgagttttcgccga 353
           || || ||||||| ||| ||||||||||| ||||| ||||| ||||| |||||  |||||
Sbjct: 407 tcgtgtgggttagcataaaagtaatcctcttcttttggcttattttcaagtttctgccga 348

                                                                       
Query: 354 caggatggttgaaccacacggcctctatgaacttcttggacagaagatgtaaaattctcc 413
           ||||| |||||||| |||||   |||||||  ||| ||||||||||||| |||||| | |
Sbjct: 347 caggacggttgaactacacgatttctatgagtttcctggacagaagatgcaaaattgttc 288

                                                                       
Query: 414 caagaaattgtcttgttggtgtacaagtctataagttcaactagtttccgtcggtctggc 473
           ||||| |||||||| ||| ||||||  ||||||| | |||| | |||| |||||||| | 
Sbjct: 287 caagagattgtcttattgttgtacagatctataaatccaaccaatttctgtcggtctagt 228

                                                                       
Query: 474 aacacactttttcggaaacccaggaaccttctgtggccttcaacaagttttgccatgtta 533
           | ||||||| | | ||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 227 agcacacttctcctgaaacccaggaacctccggtgaccttcaacaagttttgccatgtta 168

                                                                       
Query: 534 ccatcgtaagtaggaaggaaaacatcactagcggtggatacaatgaaatcaagtgcagcc 593
           ||||| |||||||||| ||||| |||||| || |||||||||||||| ||||||||||||
Sbjct: 167 ccatcataagtaggaatgaaaatatcactggctgtggatacaatgaagtcaagtgcagcc 108

                            
Query: 594 atctgagaagaatggtt 610
           |||||||||||||||||
Sbjct: 107 atctgagaagaatggtt 91
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>ref|XM_470295.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1401

 Score =  291 bits (147), Expect = 1e-75
 Identities = 318/375 (84%)
 Strand = Plus / Minus

                                                                        
Query: 236  tcaccttacagtgactgtattcttggttccactgcacaggcttgaattggccaagcactc 295
            |||||||||| ||| || || ||||||||  ||||| |  ||||||||||||| ||| ||
Sbjct: 1401 tcaccttacactgattgcatccttggttcggctgcaaaatcttgaattggccaggcattc 1342

                                                                        
Query: 296  atgggggttagaatagaagtaatcctcctctttcggcttgttttcgagttttcgccgaca 355
             || ||||||| ||| ||||||||||| ||||| ||||| ||||| |||||  |||||||
Sbjct: 1341 gtgtgggttagcataaaagtaatcctcttcttttggcttattttcaagtttctgccgaca 1282

                                                                        
Query: 356  ggatggttgaaccacacggcctctatgaacttcttggacagaagatgtaaaattctccca 415
            ||| |||||||| |||||   |||||||  ||| ||||||||||||| |||||| | |||
Sbjct: 1281 ggacggttgaactacacgatttctatgagtttcctggacagaagatgcaaaattgttcca 1222

                                                                        
Query: 416  agaaattgtcttgttggtgtacaagtctataagttcaactagtttccgtcggtctggcaa 475
            ||| |||||||| ||| ||||||  ||||||| | |||| | |||| |||||||| | | 
Sbjct: 1221 agagattgtcttattgttgtacagatctataaatccaaccaatttctgtcggtctagtag 1162

                                                                        
Query: 476  cacactttttcggaaacccaggaaccttctgtggccttcaacaagttttgccatgttacc 535
            ||||||| | | ||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 1161 cacacttctcctgaaacccaggaacctccggtgaccttcaacaagttttgccatgttacc 1102

                                                                        
Query: 536  atcgtaagtaggaaggaaaacatcactagcggtggatacaatgaaatcaagtgcagccat 595
            ||| |||||||||| ||||| |||||| || |||||||||||||| ||||||||||||||
Sbjct: 1101 atcataagtaggaatgaaaatatcactggctgtggatacaatgaagtcaagtgcagccat 1042

                           
Query: 596  ctgagaagaatggtt 610
            |||||||||||||||
Sbjct: 1041 ctgagaagaatggtt 1027
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>dbj|AK107189.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H12, full
            insert sequence
          Length = 1882

 Score =  287 bits (145), Expect = 2e-74
 Identities = 319/377 (84%)
 Strand = Plus / Minus

                                                                        
Query: 234  gctcaccttacagtgactgtattcttggttccactgcacaggcttgaattggccaagcac 293
            |||||||||||| ||| || || ||||||||  ||||| |  ||||||||||||| ||| 
Sbjct: 1574 gctcaccttacactgattgcatccttggttcggctgcaaaatcttgaattggccaggcat 1515

                                                                        
Query: 294  tcatgggggttagaatagaagtaatcctcctctttcggcttgttttcgagttttcgccga 353
            || || ||||||| ||| ||||||||||| ||||| ||||| ||||| |||||  |||||
Sbjct: 1514 tcgtgtgggttagcataaaagtaatcctcttcttttggcttattttcaagtttctgccga 1455

                                                                        
Query: 354  caggatggttgaaccacacggcctctatgaacttcttggacagaagatgtaaaattctcc 413
            ||||| |||||||| |||||   |||||||  ||| ||||||||||||| |||||| | |
Sbjct: 1454 caggacggttgaactacacgatttctatgagtttcctggacagaagatgcaaaattgttc 1395

                                                                        
Query: 414  caagaaattgtcttgttggtgtacaagtctataagttcaactagtttccgtcggtctggc 473
            ||||| |||||||| ||| ||||||  ||||||| | |||| | |||| |||||||| | 
Sbjct: 1394 caagagattgtcttattgttgtacagatctataaatccaaccaatttctgtcggtctagt 1335

                                                                        
Query: 474  aacacactttttcggaaacccaggaaccttctgtggccttcaacaagttttgccatgtta 533
            | ||||||| | | ||||||||||||||| | ||| ||||||||| ||||||||||||||
Sbjct: 1334 agcacacttctcctgaaacccaggaacctccggtgaccttcaacaggttttgccatgtta 1275

                                                                        
Query: 534  ccatcgtaagtaggaaggaaaacatcactagcggtggatacaatgaaatcaagtgcagcc 593
            ||||| |||||||||| ||||| |||||| || |||||||||||||| ||||||||||||
Sbjct: 1274 ccatcataagtaggaatgaaaatatcactggctgtggatacaatgaagtcaagtgcagcc 1215

                             
Query: 594  atctgagaagaatggtt 610
            |||||||||||||||||
Sbjct: 1214 atctgagaagaatggtt 1198
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  153 bits (77), Expect = 9e-34
 Identities = 95/101 (94%)
 Strand = Plus / Plus

                                                                           
Query: 510     ccttcaacaagttttgccatgttaccatcgtaagtaggaaggaaaacatcactagcggtg 569
               ||||||||||||||||||||||||||||| |||||||||| ||||| |||||| || |||
Sbjct: 3699787 ccttcaacaagttttgccatgttaccatcataagtaggaatgaaaatatcactggctgtg 3699846

                                                        
Query: 570     gatacaatgaaatcaagtgcagccatctgagaagaatggtt 610
               ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3699847 gatacaatgaagtcaagtgcagccatctgagaagaatggtt 3699887



 Score =  153 bits (77), Expect = 9e-34
 Identities = 221/269 (82%)
 Strand = Plus / Plus

                                                                           
Query: 234     gctcaccttacagtgactgtattcttggttccactgcacaggcttgaattggccaagcac 293
               |||||||||||| ||| || || ||||||||  ||||| |  ||||||||||||| ||| 
Sbjct: 3699368 gctcaccttacactgattgcatccttggttcggctgcaaaatcttgaattggccaggcat 3699427

                                                                           
Query: 294     tcatgggggttagaatagaagtaatcctcctctttcggcttgttttcgagttttcgccga 353
               || || ||||||| ||| ||||||||||| ||||| ||||| ||||| |||||  |||||
Sbjct: 3699428 tcgtgtgggttagcataaaagtaatcctcttcttttggcttattttcaagtttctgccga 3699487

                                                                           
Query: 354     caggatggttgaaccacacggcctctatgaacttcttggacagaagatgtaaaattctcc 413
               ||||| |||||||| |||||   |||||||  ||| ||||||||||||| |||||| | |
Sbjct: 3699488 caggacggttgaactacacgatttctatgagtttcctggacagaagatgcaaaattgttc 3699547

                                                                           
Query: 414     caagaaattgtcttgttggtgtacaagtctataagttcaactagtttccgtcggtctggc 473
               ||||| |||||||| ||| ||||||  ||||||| | |||| | |||| |||||||| | 
Sbjct: 3699548 caagagattgtcttattgttgtacagatctataaatccaaccaatttctgtcggtctagt 3699607

                                            
Query: 474     aacacactttttcggaaacccaggaacct 502
               | ||||||| | | |||||||||||||||
Sbjct: 3699608 agcacacttctcctgaaacccaggaacct 3699636
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>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete
             sequence
          Length = 160738

 Score =  153 bits (77), Expect = 9e-34
 Identities = 221/269 (82%)
 Strand = Plus / Minus

                                                                         
Query: 234   gctcaccttacagtgactgtattcttggttccactgcacaggcttgaattggccaagcac 293
             |||||||||||| ||| || || ||||||||  ||||| |  ||||||||||||| ||| 
Sbjct: 82009 gctcaccttacactgattgcatccttggttcggctgcaaaatcttgaattggccaggcat 81950

                                                                         
Query: 294   tcatgggggttagaatagaagtaatcctcctctttcggcttgttttcgagttttcgccga 353
             || || ||||||| ||| ||||||||||| ||||| ||||| ||||| |||||  |||||
Sbjct: 81949 tcgtgtgggttagcataaaagtaatcctcttcttttggcttattttcaagtttctgccga 81890

                                                                         
Query: 354   caggatggttgaaccacacggcctctatgaacttcttggacagaagatgtaaaattctcc 413
             ||||| |||||||| |||||   |||||||  ||| ||||||||||||| |||||| | |
Sbjct: 81889 caggacggttgaactacacgatttctatgagtttcctggacagaagatgcaaaattgttc 81830

                                                                         
Query: 414   caagaaattgtcttgttggtgtacaagtctataagttcaactagtttccgtcggtctggc 473
             ||||| |||||||| ||| ||||||  ||||||| | |||| | |||| |||||||| | 
Sbjct: 81829 caagagattgtcttattgttgtacagatctataaatccaaccaatttctgtcggtctagt 81770

                                          
Query: 474   aacacactttttcggaaacccaggaacct 502
             | ||||||| | | |||||||||||||||
Sbjct: 81769 agcacacttctcctgaaacccaggaacct 81741



 Score =  153 bits (77), Expect = 9e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                         
Query: 510   ccttcaacaagttttgccatgttaccatcgtaagtaggaaggaaaacatcactagcggtg 569
             ||||||||||||||||||||||||||||| |||||||||| ||||| |||||| || |||
Sbjct: 81590 ccttcaacaagttttgccatgttaccatcataagtaggaatgaaaatatcactggctgtg 81531

                                                      
Query: 570   gatacaatgaaatcaagtgcagccatctgagaagaatggtt 610
             ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 81530 gatacaatgaagtcaagtgcagccatctgagaagaatggtt 81490
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  153 bits (77), Expect = 9e-34
 Identities = 95/101 (94%)
 Strand = Plus / Plus

                                                                           
Query: 510     ccttcaacaagttttgccatgttaccatcgtaagtaggaaggaaaacatcactagcggtg 569
               ||||||||||||||||||||||||||||| |||||||||| ||||| |||||| || |||
Sbjct: 3699898 ccttcaacaagttttgccatgttaccatcataagtaggaatgaaaatatcactggctgtg 3699957

                                                        
Query: 570     gatacaatgaaatcaagtgcagccatctgagaagaatggtt 610
               ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3699958 gatacaatgaagtcaagtgcagccatctgagaagaatggtt 3699998



 Score =  153 bits (77), Expect = 9e-34
 Identities = 221/269 (82%)
 Strand = Plus / Plus

                                                                           
Query: 234     gctcaccttacagtgactgtattcttggttccactgcacaggcttgaattggccaagcac 293
               |||||||||||| ||| || || ||||||||  ||||| |  ||||||||||||| ||| 
Sbjct: 3699479 gctcaccttacactgattgcatccttggttcggctgcaaaatcttgaattggccaggcat 3699538

                                                                           
Query: 294     tcatgggggttagaatagaagtaatcctcctctttcggcttgttttcgagttttcgccga 353
               || || ||||||| ||| ||||||||||| ||||| ||||| ||||| |||||  |||||
Sbjct: 3699539 tcgtgtgggttagcataaaagtaatcctcttcttttggcttattttcaagtttctgccga 3699598

                                                                           
Query: 354     caggatggttgaaccacacggcctctatgaacttcttggacagaagatgtaaaattctcc 413
               ||||| |||||||| |||||   |||||||  ||| ||||||||||||| |||||| | |
Sbjct: 3699599 caggacggttgaactacacgatttctatgagtttcctggacagaagatgcaaaattgttc 3699658

                                                                           
Query: 414     caagaaattgtcttgttggtgtacaagtctataagttcaactagtttccgtcggtctggc 473
               ||||| |||||||| ||| ||||||  ||||||| | |||| | |||| |||||||| | 
Sbjct: 3699659 caagagattgtcttattgttgtacagatctataaatccaaccaatttctgtcggtctagt 3699718

                                            
Query: 474     aacacactttttcggaaacccaggaacct 502
               | ||||||| | | |||||||||||||||
Sbjct: 3699719 agcacacttctcctgaaacccaggaacct 3699747
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>ref|NM_111092.3| Arabidopsis thaliana unknown protein AT3G02250 mRNA, complete cds
          Length = 2608

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 580  aatcaagtgcagccatctgagaagaatggtttt 612
            ||||||| |||||||| ||||||||||||||||
Sbjct: 1886 aatcaagagcagccatttgagaagaatggtttt 1854
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>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence,
             complete sequence
          Length = 94369

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 580   aatcaagtgcagccatctgagaagaatggtttt 612
             ||||||| |||||||| ||||||||||||||||
Sbjct: 50283 aatcaagagcagccatttgagaagaatggtttt 50251
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>gb|AY056304.1| Arabidopsis thaliana putative auxin-independent growth promoter
            protein (At3g02250) mRNA, complete cds
          Length = 2456

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 580  aatcaagtgcagccatctgagaagaatggtttt 612
            ||||||| |||||||| ||||||||||||||||
Sbjct: 1765 aatcaagagcagccatttgagaagaatggtttt 1733
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>gb|AY140026.1| Arabidopsis thaliana putative auxin-independent growth promoter
            (At3g02250) mRNA, complete cds
          Length = 2448

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 580  aatcaagtgcagccatctgagaagaatggtttt 612
            ||||||| |||||||| ||||||||||||||||
Sbjct: 1767 aatcaagagcagccatttgagaagaatggtttt 1735
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>emb|BX823979.1|CNS0A7F7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH11ZH07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2569

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 580  aatcaagtgcagccatctgagaagaatggtttt 612
            ||||||| |||||||| ||||||||||||||||
Sbjct: 1885 aatcaagagcagccatttgagaagaatggtttt 1853
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>gb|AY084929.1| Arabidopsis thaliana clone 121858 mRNA, complete sequence
          Length = 1128

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 580 aatcaagtgcagccatctgagaagaatggtttt 612
           ||||||| |||||||| ||||||||||||||||
Sbjct: 447 aatcaagagcagccatttgagaagaatggtttt 415
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>ref|NM_121579.3| Arabidopsis thaliana unknown protein AT5G15740 mRNA, complete cds
          Length = 2458

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 580  aatcaagtgcagccatctgagaagaatggtt 610
            |||||||||||||||| ||||| ||||||||
Sbjct: 1871 aatcaagtgcagccatttgagatgaatggtt 1841
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 428     gttggtgtacaagtctataagtt 450
               |||||||||||||||||||||||
Sbjct: 1665109 gttggtgtacaagtctataagtt 1665131



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 428    gttggtgtacaagtctataagtt 450
              |||||||||||||||||||||||
Sbjct: 702512 gttggtgtacaagtctataagtt 702534
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>emb|AL391144.1|ATF14F8 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project)
          Length = 96892

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 580   aatcaagtgcagccatctgagaagaatggtt 610
             |||||||||||||||| ||||| ||||||||
Sbjct: 50788 aatcaagtgcagccatttgagatgaatggtt 50818
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>dbj|AK220896.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-45-N06
          Length = 895

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 580 aatcaagtgcagccatctgagaagaatggtt 610
           |||||||||||||||| ||||| ||||||||
Sbjct: 313 aatcaagtgcagccatttgagatgaatggtt 283
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>gb|BT023458.1| Arabidopsis thaliana At5g15740 gene, complete cds
          Length = 2172

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 580  aatcaagtgcagccatctgagaagaatggtt 610
            |||||||||||||||| ||||| ||||||||
Sbjct: 1828 aatcaagtgcagccatttgagatgaatggtt 1798
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>emb|BX832033.1|CNS0A1Q0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH47ZG07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2419

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 580  aatcaagtgcagccatctgagaagaatggtt 610
            |||||||||||||||| ||||| ||||||||
Sbjct: 1874 aatcaagtgcagccatttgagatgaatggtt 1844
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>gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, complete sequence
          Length = 207021

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 553    aaacatcactagcggtggatac 574
              ||||||||||||||||||||||
Sbjct: 176502 aaacatcactagcggtggatac 176481
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>gb|AC124699.4| Mus musculus BAC clone RP24-187B13 from chromosome 1, complete sequence
          Length = 177793

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 553    aaacatcactagcggtggatac 574
              ||||||||||||||||||||||
Sbjct: 173413 aaacatcactagcggtggatac 173434
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>gb|AC098686.11| Bos taurus clone rp42-146c17, complete sequence
          Length = 164686

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 195    atcaccaacagtaacttgcaca 216
              ||||||||||||||||||||||
Sbjct: 161568 atcaccaacagtaacttgcaca 161589
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>dbj|AK034366.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330184B03 product:unclassifiable, full
            insert sequence
          Length = 4386

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 386  ttcttggacagaagatgtaaaattct 411
            ||||||||||||||| ||||||||||
Sbjct: 1511 ttcttggacagaagaggtaaaattct 1536
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>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
             sequence
          Length = 201727

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 386   ttcttggacagaagatgtaaaattct 411
             ||||||||||||||| ||||||||||
Sbjct: 12490 ttcttggacagaagaggtaaaattct 12465
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>ref|XM_483711.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1824

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 571  atacaatgaaatcaagtgcagccat 595
            ||||||| |||||||||||||||||
Sbjct: 1264 atacaataaaatcaagtgcagccat 1240
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>gb|AC182667.2| Populus trichocarpa clone Pop1-18L12, complete sequence
          Length = 32928

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                         
Query: 510   ccttcaacaagttttgccatgttaccatcgtaagtaggaaggaaaacatcactagcggtg 569
             ||||| |||| |||||||||||| ||||| || || |||| ||||   ||||| ||  | 
Sbjct: 29919 ccttccacaacttttgccatgtttccatcataggtgggaatgaaagtgtcactggctatt 29860

                                                      
Query: 570   gatacaatgaaatcaagtgcagccatctgagaagaatggtt 610
             || || |||||||| || |||||||| ||||| ||||||||
Sbjct: 29859 gagaccatgaaatcgagagcagccatttgagatgaatggtt 29819
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 571      atacaatgaaatcaagtgcagccat 595
                ||||||| |||||||||||||||||
Sbjct: 27704423 atacaataaaatcaagtgcagccat 27704399
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>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0011H15
          Length = 130146

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 571    atacaatgaaatcaagtgcagccat 595
              ||||||| |||||||||||||||||
Sbjct: 101767 atacaataaaatcaagtgcagccat 101743
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>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1125_C01
          Length = 123849

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 571   atacaatgaaatcaagtgcagccat 595
             ||||||| |||||||||||||||||
Sbjct: 37345 atacaataaaatcaagtgcagccat 37321
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>gb|AF065472.1|AF065472 Hydra vulgaris non-receptor protein-tyrosine kinase Abl mRNA,
           partial cds
          Length = 894

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 414 caagaaattgtcttgttggtg 434
           |||||||||||||||||||||
Sbjct: 293 caagaaattgtcttgttggtg 313
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>gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0019E05,
              complete sequence
          Length = 129021

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 92     agaattgaaagaagaaaaacctga 115
              ||||||||||||| ||||||||||
Sbjct: 104529 agaattgaaagaaaaaaaacctga 104552
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   caggcgaggcggcaaatgtg 234
             ||||||||||||||||||||
Sbjct: 18909 caggcgaggcggcaaatgtg 18928
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>gb|AC152826.2| Mus musculus BAC clone RP23-111C21 from chromosome 8, complete sequence
          Length = 196497

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   aagaaaaacctgacctatac 122
             ||||||||||||||||||||
Sbjct: 11192 aagaaaaacctgacctatac 11173
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>gb|AC166357.3| Mus musculus BAC clone RP23-360N1 from chromosome 7, complete sequence
          Length = 220916

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   ccttacagtgactgtattct 258
             ||||||||||||||||||||
Sbjct: 82524 ccttacagtgactgtattct 82505
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>gb|AC116569.6| Mus musculus BAC clone RP23-59O19 from chromosome 8, complete sequence
          Length = 132422

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   aagaaaaacctgacctatac 122
             ||||||||||||||||||||
Sbjct: 89300 aagaaaaacctgacctatac 89319
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>gb|AC102806.18| Mus musculus chromosome 3, clone RP23-341B15, complete sequence
          Length = 229984

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     cagaattgaaagaagaaaaa 110
              ||||||||||||||||||||
Sbjct: 107285 cagaattgaaagaagaaaaa 107304
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>gb|AC073072.11| Homo sapiens BAC clone RP11-240H8 from 7, complete sequence
          Length = 91192

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    aatgaatggattgcagaatt 97
             ||||||||||||||||||||
Sbjct: 84030 aatgaatggattgcagaatt 84011
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>gb|AC118561.10| Mus musculus chromosome 12, clone RP23-265N17, complete sequence
          Length = 227977

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    gagccgaacaaaaatttacacaaa 44
             |||| |||||||||||||||||||
Sbjct: 13012 gagctgaacaaaaatttacacaaa 12989
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>emb|AL034488.2|CEY54G11A Caenorhabditis elegans YAC Y54G11A, complete sequence
          Length = 99415

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   ggatacaatgaaatcaagtg 588
             ||||||||||||||||||||
Sbjct: 35699 ggatacaatgaaatcaagtg 35680
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>ref|XM_845746.1| PREDICTED: Canis familiaris similar to otoancorin isoform 1
            (LOC608655), mRNA
          Length = 3558

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 581  atcaagtgcagccatctgag 600
            ||||||||||||||||||||
Sbjct: 1108 atcaagtgcagccatctgag 1127
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>ref|XM_765160.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_162_39408_36910)
            partial mRNA
          Length = 2499

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 380  atgaacttcttggacagaag 399
            ||||||||||||||||||||
Sbjct: 2123 atgaacttcttggacagaag 2142
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>emb|AL139424.21| Human DNA sequence from clone RP4-736L20 on chromosome 1p36.12-36.23
             Contains the 3' end of the KIF1B gene for kinesin family
             member 1B (KIAA0591), the PGD gene for phosphogluconate
             dehydrogenase, the 5' end of the CORT gene for cortistatin
             (LOC374945) and two CpG islands, complete sequence
          Length = 86720

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   aatgtgctcaccttacagtgactg 252
             ||||||||||||||||||| ||||
Sbjct: 13579 aatgtgctcaccttacagtcactg 13556
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>dbj|AK092111.1| Homo sapiens cDNA FLJ34792 fis, clone NT2NE2005419
          Length = 2090

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  cagaattgaaagaagaaaaa 110
           ||||||||||||||||||||
Sbjct: 485 cagaattgaaagaagaaaaa 504
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>gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complete sequence
          Length = 173967

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    cagaattgaaagaagaaaaa 110
             ||||||||||||||||||||
Sbjct: 92797 cagaattgaaagaagaaaaa 92816
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>gb|AC156568.3| Mus musculus BAC clone RP23-291D3 from chromosome 12, complete sequence
          Length = 224350

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gaacataaatgaatggattg 90
              ||||||||||||||||||||
Sbjct: 123040 gaacataaatgaatggattg 123021
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>gb|AC159265.2| Mus musculus BAC clone RP23-462H20 from chromosome 8, complete sequence
          Length = 201728

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   aagaaaaacctgacctatac 122
             ||||||||||||||||||||
Sbjct: 80462 aagaaaaacctgacctatac 80481
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>gb|AC093048.1| Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone
              BACR39D12, complete sequence
          Length = 184021

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tgaacaagagccgaacaaaa 33
              ||||||||||||||||||||
Sbjct: 114291 tgaacaagagccgaacaaaa 114272
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>gb|AC024614.5|AC024614 Homo sapiens chromosome 17, clone RP11-118G23, complete sequence
          Length = 158560

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   gtaagtaggaaggaaaacat 558
             ||||||||||||||||||||
Sbjct: 54368 gtaagtaggaaggaaaacat 54387
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>ref|NM_064573.2| Caenorhabditis elegans Serpentine Receptor, class H family member
           (srh-41) (srh-41) mRNA, complete cds
          Length = 1038

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 569 ggatacaatgaaatcaagtg 588
           ||||||||||||||||||||
Sbjct: 141 ggatacaatgaaatcaagtg 160
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 92       agaattgaaagaagaaaaacctga 115
                ||||||||||||| ||||||||||
Sbjct: 17229727 agaattgaaagaaaaaaaacctga 17229750
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   caggcgaggcggcaaatgtg 234
             ||||||||||||||||||||
Sbjct: 18758 caggcgaggcggcaaatgtg 18777
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>emb|AJ299462.1|HEA299462 Hepatitis A virus partial VP1 and P2A genes, genomic RNA, strain
           NOR-19
          Length = 348

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 cttcagtccgaggatcatca 198
           ||||||||||||||||||||
Sbjct: 176 cttcagtccgaggatcatca 157
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>gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67 of 83 of the complete
             sequence
          Length = 262745

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tgaacaagagccgaacaaaa 33
             ||||||||||||||||||||
Sbjct: 22209 tgaacaagagccgaacaaaa 22190
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>gb|AC006471.1|AC006471 Drosophila melanogaster, chromosome 2L, region 36D2-36E2, P1 clones
             DS00554 and DS04489, complete sequence
          Length = 134019

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tgaacaagagccgaacaaaa 33
             ||||||||||||||||||||
Sbjct: 88259 tgaacaagagccgaacaaaa 88278
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 92       agaattgaaagaagaaaaacctga 115
                ||||||||||||| ||||||||||
Sbjct: 17324913 agaattgaaagaaaaaaaacctga 17324936
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
             strain 2308
          Length = 1156948

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   caggcgaggcggcaaatgtg 234
             ||||||||||||||||||||
Sbjct: 18807 caggcgaggcggcaaatgtg 18826


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,187,358
Number of Sequences: 3902068
Number of extensions: 6187358
Number of successful extensions: 118814
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 118562
Number of HSP's gapped (non-prelim): 253
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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