ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476192.1| Oryza sativa (japonica cultivar-group), predic... 301 2e-78
2dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 2e-78
3gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome... 220 5e-54
4gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome... 220 5e-54
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 220 5e-54
6ref|NM_114655.3| Arabidopsis thaliana unknown protein AT3G47850 ... 46 0.15
7emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in l... 46 0.15
8gb|AY116964.1| Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, co... 46 0.15
9ref|XM_685788.1| PREDICTED: Danio rerio similar to phosphorylase... 46 0.15
10gb|AF428310.1|AF428310 Arabidopsis thaliana AT3g47850/T23J7_180 ... 46 0.15
11emb|BX822580.1|CNS0A765 Arabidopsis thaliana Full-length cDNA Co... 46 0.15
12emb|BX825399.1|CNS0A6EB Arabidopsis thaliana Full-length cDNA Co... 46 0.15
13emb|BX842231.1|CNS09YEF Arabidopsis thaliana Full-length cDNA Co... 46 0.15
14gb|AY086386.1| Arabidopsis thaliana clone 2485 mRNA, complete se... 46 0.15
15emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E... 44 0.60
16emb|BX927104.11| Zebrafish DNA sequence from clone CH211-210P22 ... 44 0.60
17emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 ... 44 0.60
18emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chr... 42 2.4
19gb|AC084377.5| Homo sapiens BAC clone RP11-478L9 from 2, complet... 42 2.4
20gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y,... 42 2.4
21gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome... 40 9.4
22gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 9.4
23gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence 40 9.4
24ref|XM_662875.1| Cryptosporidium hominis TU502 hypothetical prot... 40 9.4
25emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chr... 40 9.4
26emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BA... 40 9.4
27emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in... 40 9.4
28ref|XM_626205.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 9.4
29gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, com... 40 9.4
30dbj|AK077205.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.4
31gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, comp... 40 9.4
32gb|AC124730.5| Mus musculus chromosome 5 clone RP23-286M3, compl... 40 9.4
33ref|NM_177607.2| Mus musculus RIKEN cDNA 4933430I17 gene (493343... 40 9.4
34gb|AF051241.1|AF051241 Picea mariana phosphoglycerate kinase (Sb... 40 9.4
35gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, comple... 40 9.4
36gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 m... 40 9.4 
>ref|XM_476192.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  301 bits (152), Expect = 2e-78
 Identities = 333/392 (84%), Gaps = 6/392 (1%)
 Strand = Plus / Minus

                                                                       
Query: 297 tgtccttgatgcccggtacctgcgaagcgagacgggcttgctgtagagaaaggtgctgct 356
           ||||||||||  || ||| |||| ||||| ||||| |||||||| |||||||  ||||  
Sbjct: 932 tgtccttgatttccagtagctgcaaagcgggacggacttgctgtcgagaaagtcgctg-- 875

                                                                       
Query: 357 ggacttcttggagtgttgccagggttgtggttgcgagaaccaaatggagacctagcaaag 416
            |||||||||||||||  ||||  ||||| | | ||||||| || |||||||||||||| 
Sbjct: 874 -gacttcttggagtgtgaccagaattgtgttggagagaaccgaacggagacctagcaaaa 816

                                                                       
Query: 417 gaggctgttgaaggagaaatactgtggacatgatgcaagggacgtccaggagtgccctgg 476
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 815 gaggctgttgaaggagaaatactatgaacatgatgcaagggacgtccaggagtgccctgg 756

                                                                       
Query: 477 ttggaaccagcatctgactccccagcaaactcgctgaaattgacatcaacggtcattctg 536
           |||||||| || || ||||| |||||||  || || ||||||||||||||||||||||||
Sbjct: 755 ttggaacccgcctcagactcgccagcaacatcactaaaattgacatcaacggtcattctg 696

                                                                       
Query: 537 ggcacctgtctgggaa---cacttccatcagctgtgttttctggcggctgaggcatggca 593
           |||||| | || | ||    ||||||||| |||| ||||||||  ||||||||||  | |
Sbjct: 695 ggcaccagcctagaaatagaacttccatcggctgcgttttctgatggctgaggcacagta 636

                                                                       
Query: 594 gcacgcagcgaagcctgcatgctgcgtcttctgatttcttcttcggcatttaaaatctgc 653
           |  ||||  || ||||||||| ||||  | |||||||||||||| |||||||||||||||
Sbjct: 635 gtgcgcaatgaggcctgcatggtgcgcatcctgatttcttcttcagcatttaaaatctgc 576

                                           
Query: 654 ttcagcatctgcacgagatcatgctttttctt 685
           |||||||||||||| |||||||||||||||||
Sbjct: 575 ttcagcatctgcacaagatcatgctttttctt 544



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 182  ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 241
            |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 1056 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 997

                                       
Query: 242  aggggaaggcgacgatgctacaaagtt 268
             ||||||||||| || |||||||||||
Sbjct: 996  gggggaaggcgaagaggctacaaagtt 970
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>dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D12, full
            insert sequence
          Length = 1535

 Score =  301 bits (152), Expect = 2e-78
 Identities = 333/392 (84%), Gaps = 6/392 (1%)
 Strand = Plus / Minus

                                                                        
Query: 297  tgtccttgatgcccggtacctgcgaagcgagacgggcttgctgtagagaaaggtgctgct 356
            ||||||||||  || ||| |||| ||||| ||||| |||||||| |||||||  ||||  
Sbjct: 1198 tgtccttgatttccagtagctgcaaagcgggacggacttgctgtcgagaaagtcgctg-- 1141

                                                                        
Query: 357  ggacttcttggagtgttgccagggttgtggttgcgagaaccaaatggagacctagcaaag 416
             |||||||||||||||  ||||  ||||| | | ||||||| || |||||||||||||| 
Sbjct: 1140 -gacttcttggagtgtgaccagaattgtgttggagagaaccgaacggagacctagcaaaa 1082

                                                                        
Query: 417  gaggctgttgaaggagaaatactgtggacatgatgcaagggacgtccaggagtgccctgg 476
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1081 gaggctgttgaaggagaaatactatgaacatgatgcaagggacgtccaggagtgccctgg 1022

                                                                        
Query: 477  ttggaaccagcatctgactccccagcaaactcgctgaaattgacatcaacggtcattctg 536
            |||||||| || || ||||| |||||||  || || ||||||||||||||||||||||||
Sbjct: 1021 ttggaacccgcctcagactcgccagcaacatcactaaaattgacatcaacggtcattctg 962

                                                                        
Query: 537  ggcacctgtctgggaa---cacttccatcagctgtgttttctggcggctgaggcatggca 593
            |||||| | || | ||    ||||||||| |||| ||||||||  ||||||||||  | |
Sbjct: 961  ggcaccagcctagaaatagaacttccatcggctgcgttttctgatggctgaggcacagta 902

                                                                        
Query: 594  gcacgcagcgaagcctgcatgctgcgtcttctgatttcttcttcggcatttaaaatctgc 653
            |  ||||  || ||||||||| ||||  | |||||||||||||| |||||||||||||||
Sbjct: 901  gtgcgcaatgaggcctgcatggtgcgcatcctgatttcttcttcagcatttaaaatctgc 842

                                            
Query: 654  ttcagcatctgcacgagatcatgctttttctt 685
            |||||||||||||| |||||||||||||||||
Sbjct: 841  ttcagcatctgcacaagatcatgctttttctt 810



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 182  ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 241
            |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 1322 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 1263

                                       
Query: 242  aggggaaggcgacgatgctacaaagtt 268
             ||||||||||| || |||||||||||
Sbjct: 1262 gggggaaggcgaagaggctacaaagtt 1236
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>gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0043H23, complete sequence
          Length = 134097

 Score =  220 bits (111), Expect = 5e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                         
Query: 391   gagaaccaaatggagacctagcaaaggaggctgttgaaggagaaatactgtggacatgat 450
             ||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 39965 gagaaccgaacggagacctagcaaaagaggctgttgaaggagaaatactatgaacatgat 39906

                                                                         
Query: 451   gcaagggacgtccaggagtgccctggttggaaccagcatctgactccccagcaaactcgc 510
             |||||||||||||||||||||||||||||||||| || || ||||| |||||||  || |
Sbjct: 39905 gcaagggacgtccaggagtgccctggttggaacccgcctcagactcgccagcaacatcac 39846

                                                                         
Query: 511   tgaaattgacatcaacggtcattctgggcacctgtctgggaa---cacttccatcagctg 567
             | |||||||||||||||||||||||||||||| | || | ||    ||||||||| ||||
Sbjct: 39845 taaaattgacatcaacggtcattctgggcaccagcctagaaatagaacttccatcggctg 39786

                                                                         
Query: 568   tgttttctggcggctgaggcatggcagcacgcagcgaagcctgcatgctgcgtcttctga 627
              ||||||||  ||||||||||  | ||  ||||  || ||||||||| ||||  | ||||
Sbjct: 39785 cgttttctgatggctgaggcacagtagtgcgcaatgaggcctgcatggtgcgcatcctga 39726

                                      
Query: 628   tttcttcttcggcatttaaaatctg 652
             |||||||||| ||||||||||||||
Sbjct: 39725 tttcttcttcagcatttaaaatctg 39701



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 182   ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 241
             |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 40451 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 40392

                                        
Query: 242   aggggaaggcgacgatgctacaaagtt 268
              ||||||||||| || |||||||||||
Sbjct: 40391 gggggaaggcgaagaggctacaaagtt 40365



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                 
Query: 650   ctgcttcagcatctgcacgagatcatgctttttctt 685
             |||||||||||||||||| |||||||||||||||||
Sbjct: 38625 ctgcttcagcatctgcacaagatcatgctttttctt 38590
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>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08,
             complete sequence
          Length = 152527

 Score =  220 bits (111), Expect = 5e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                         
Query: 391   gagaaccaaatggagacctagcaaaggaggctgttgaaggagaaatactgtggacatgat 450
             ||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 75443 gagaaccgaacggagacctagcaaaagaggctgttgaaggagaaatactatgaacatgat 75384

                                                                         
Query: 451   gcaagggacgtccaggagtgccctggttggaaccagcatctgactccccagcaaactcgc 510
             |||||||||||||||||||||||||||||||||| || || ||||| |||||||  || |
Sbjct: 75383 gcaagggacgtccaggagtgccctggttggaacccgcctcagactcgccagcaacatcac 75324

                                                                         
Query: 511   tgaaattgacatcaacggtcattctgggcacctgtctgggaa---cacttccatcagctg 567
             | |||||||||||||||||||||||||||||| | || | ||    ||||||||| ||||
Sbjct: 75323 taaaattgacatcaacggtcattctgggcaccagcctagaaatagaacttccatcggctg 75264

                                                                         
Query: 568   tgttttctggcggctgaggcatggcagcacgcagcgaagcctgcatgctgcgtcttctga 627
              ||||||||  ||||||||||  | ||  ||||  || ||||||||| ||||  | ||||
Sbjct: 75263 cgttttctgatggctgaggcacagtagtgcgcaatgaggcctgcatggtgcgcatcctga 75204

                                      
Query: 628   tttcttcttcggcatttaaaatctg 652
             |||||||||| ||||||||||||||
Sbjct: 75203 tttcttcttcagcatttaaaatctg 75179



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 182   ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 241
             |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 75929 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 75870

                                        
Query: 242   aggggaaggcgacgatgctacaaagtt 268
              ||||||||||| || |||||||||||
Sbjct: 75869 gggggaaggcgaagaggctacaaagtt 75843



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                 
Query: 650   ctgcttcagcatctgcacgagatcatgctttttctt 685
             |||||||||||||||||| |||||||||||||||||
Sbjct: 74103 ctgcttcagcatctgcacaagatcatgctttttctt 74068
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  220 bits (111), Expect = 5e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                           
Query: 391     gagaaccaaatggagacctagcaaaggaggctgttgaaggagaaatactgtggacatgat 450
               ||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 7337188 gagaaccgaacggagacctagcaaaagaggctgttgaaggagaaatactatgaacatgat 7337129

                                                                           
Query: 451     gcaagggacgtccaggagtgccctggttggaaccagcatctgactccccagcaaactcgc 510
               |||||||||||||||||||||||||||||||||| || || ||||| |||||||  || |
Sbjct: 7337128 gcaagggacgtccaggagtgccctggttggaacccgcctcagactcgccagcaacatcac 7337069

                                                                           
Query: 511     tgaaattgacatcaacggtcattctgggcacctgtctgggaa---cacttccatcagctg 567
               | |||||||||||||||||||||||||||||| | || | ||    ||||||||| ||||
Sbjct: 7337068 taaaattgacatcaacggtcattctgggcaccagcctagaaatagaacttccatcggctg 7337009

                                                                           
Query: 568     tgttttctggcggctgaggcatggcagcacgcagcgaagcctgcatgctgcgtcttctga 627
                ||||||||  ||||||||||  | ||  ||||  || ||||||||| ||||  | ||||
Sbjct: 7337008 cgttttctgatggctgaggcacagtagtgcgcaatgaggcctgcatggtgcgcatcctga 7336949

                                        
Query: 628     tttcttcttcggcatttaaaatctg 652
               |||||||||| ||||||||||||||
Sbjct: 7336948 tttcttcttcagcatttaaaatctg 7336924



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 182     ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 241
               |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 7337674 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 7337615

                                          
Query: 242     aggggaaggcgacgatgctacaaagtt 268
                ||||||||||| || |||||||||||
Sbjct: 7337614 gggggaaggcgaagaggctacaaagtt 7337588



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                   
Query: 650     ctgcttcagcatctgcacgagatcatgctttttctt 685
               |||||||||||||||||| |||||||||||||||||
Sbjct: 7335848 ctgcttcagcatctgcacaagatcatgctttttctt 7335813
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>ref|NM_114655.3| Arabidopsis thaliana unknown protein AT3G47850 mRNA, complete cds
          Length = 1235

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 614 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 660
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 659 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 613
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>emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in linkage group 21, complete
              sequence
          Length = 263757

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 649    tctgcttcagcatctgcacgaga 671
              |||||||||||||||||||||||
Sbjct: 234727 tctgcttcagcatctgcacgaga 234705
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>gb|AY116964.1| Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, complete cds
          Length = 969

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 614 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 660
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 570 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 524
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>ref|XM_685788.1| PREDICTED: Danio rerio similar to phosphorylase kinase alpha 1
            (LOC562402), mRNA
          Length = 3228

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 649  tctgcttcagcatctgcacgaga 671
            |||||||||||||||||||||||
Sbjct: 2170 tctgcttcagcatctgcacgaga 2148
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>gb|AF428310.1|AF428310 Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, complete cds
          Length = 1160

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 614 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 660
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 621 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 575
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>emb|BX822580.1|CNS0A765 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB4ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1247

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 614 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 660
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 662 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 616
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>emb|BX825399.1|CNS0A6EB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZF10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1157

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 614 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 660
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 659 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 613
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>emb|BX842231.1|CNS09YEF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL88ZH01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1127

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 614 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 660
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 575 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 529
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>gb|AY086386.1| Arabidopsis thaliana clone 2485 mRNA, complete sequence
          Length = 1168

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 614 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 660
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 602 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 556
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>emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E23 on chromosome 6q22.33-24.1
             Contains part of the gene for a novel protein, a novel
             gene and a CpG Island, complete sequence
          Length = 98828

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    tcaataaagtagcaattcaaag 109
             ||||||||||||||||||||||
Sbjct: 52375 tcaataaagtagcaattcaaag 52354
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>emb|BX927104.11| Zebrafish DNA sequence from clone CH211-210P22 in linkage group 17,
              complete sequence
          Length = 146265

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 74     ttcacataatattgtcaataaa 95
              ||||||||||||||||||||||
Sbjct: 105285 ttcacataatattgtcaataaa 105306
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>emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 in linkage group 12,
             complete sequence
          Length = 123626

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    ttcacataatattgtcaataaa 95
             ||||||||||||||||||||||
Sbjct: 87861 ttcacataatattgtcaataaa 87882
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>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a
             novel pseudogene, complete sequence
          Length = 177796

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   ctgttgaaggagaaatactgt 441
             |||||||||||||||||||||
Sbjct: 10524 ctgttgaaggagaaatactgt 10504
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>gb|AC084377.5| Homo sapiens BAC clone RP11-478L9 from 2, complete sequence
          Length = 152320

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   tgaaggagaaatactgtggac 445
             |||||||||||||||||||||
Sbjct: 95047 tgaaggagaaatactgtggac 95067
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>gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y, complete sequence
          Length = 116795

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 421  ctgttgaaggagaaatactgt 441
            |||||||||||||||||||||
Sbjct: 9312 ctgttgaaggagaaatactgt 9292
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>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence
          Length = 227709

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   aaaggaggctgttgaaggag 432
             ||||||||||||||||||||
Sbjct: 22831 aaaggaggctgttgaaggag 22812
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 409     tagcaaaggaggctgttgaa 428
               ||||||||||||||||||||
Sbjct: 1236726 tagcaaaggaggctgttgaa 1236745
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>gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence
          Length = 165901

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 534   ctgggcacctgtctgggaacactt 557
             ||||||||||| ||||||||||||
Sbjct: 15403 ctgggcacctgcctgggaacactt 15426
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>ref|XM_662875.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50109)
           partial mRNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 76  cacataatattgtcaataaa 95
           ||||||||||||||||||||
Sbjct: 602 cacataatattgtcaataaa 621
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>emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chromosome 4 Contains the
              Prpf4 gene for PRP4 pre-mRNA processing factor 4 homolog
              (yeast), three novel genes, the Bspry gene for B-box and
              SPRY domain containing protein, the Alad gene for delta
              aminolevulinate dehydratase, the Pole3 gene for polymerase
              (DNA directed) epsilon 3 (p17 subunit) and three CpG
              islands, complete sequence
          Length = 145776

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    gatgcagcaggggaaggcga 253
              ||||||||||||||||||||
Sbjct: 136117 gatgcagcaggggaaggcga 136136
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>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
          Length = 92493

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 614   gctgcgtcttctgatttcttcttcggcatttaaaatctgc 653
             |||||||||| | | |||||| || |||||||||||||||
Sbjct: 78946 gctgcgtcttttcaattcttcctcagcatttaaaatctgc 78985
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>emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in linkage group 1,
             complete sequence
          Length = 173643

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ataatattgtcaataaagta 98
             ||||||||||||||||||||
Sbjct: 90556 ataatattgtcaataaagta 90537
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>ref|XM_626205.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_2680),
            partial mRNA
          Length = 3780

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   cacataatattgtcaataaa 95
            ||||||||||||||||||||
Sbjct: 2582 cacataatattgtcaataaa 2601
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>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence
          Length = 177717

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     aaagtagcaattcaaagagg 112
              ||||||||||||||||||||
Sbjct: 154386 aaagtagcaattcaaagagg 154405
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>dbj|AK077205.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933430I17 product:weakly similar to
            HYPOTHETICAL 53.2 KDA PROTEIN [Macaca fascicularis], full
            insert sequence
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  gatgcagcaggggaaggcga 253
            ||||||||||||||||||||
Sbjct: 1055 gatgcagcaggggaaggcga 1074
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>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence
          Length = 215022

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    aaaggaggctgttgaaggag 432
              ||||||||||||||||||||
Sbjct: 179733 aaaggaggctgttgaaggag 179714
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>gb|AC124730.5| Mus musculus chromosome 5 clone RP23-286M3, complete sequence
          Length = 194040

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 561    tcagctgtgttttctggcgg 580
              ||||||||||||||||||||
Sbjct: 174551 tcagctgtgttttctggcgg 174532
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>ref|NM_177607.2| Mus musculus RIKEN cDNA 4933430I17 gene (4933430I17Rik), mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  gatgcagcaggggaaggcga 253
            ||||||||||||||||||||
Sbjct: 1055 gatgcagcaggggaaggcga 1074
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>gb|AF051241.1|AF051241 Picea mariana phosphoglycerate kinase (Sb56) mRNA, partial cds
          Length = 663

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  ttgtcaataaagtagcaatt 104
           ||||||||||||||||||||
Sbjct: 634 ttgtcaataaagtagcaatt 653
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>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence
          Length = 194931

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    tcagctgtgttttctggcgg 580
              ||||||||||||||||||||
Sbjct: 172569 tcagctgtgttttctggcgg 172588
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>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence
          Length = 203821

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    tcagctgtgttttctggcgg 580
              ||||||||||||||||||||
Sbjct: 199879 tcagctgtgttttctggcgg 199898


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,997,356
Number of Sequences: 3902068
Number of extensions: 5997356
Number of successful extensions: 108206
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108096
Number of HSP's gapped (non-prelim): 110
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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