ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20g22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464016.1| Oryza sativa (japonica cultivar-group), mRNA 343 5e-91
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 194 3e-46
3dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 194 3e-46
4gb|AY106555.1| Zea mays PCO112740 mRNA sequence 168 2e-38
5gb|AY112025.1| Zea mays CL12360_1 mRNA sequence 123 8e-25
6emb|AL138788.6| Human DNA sequence from clone RP4-692D3 on chrom... 44 0.60
7emb|BX470171.6| Zebrafish DNA sequence from clone CH211-22O10 in... 44 0.60
8gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 44 0.60
9gb|AY288982.1| Homo sapiens antigen MLAA-39 mRNA, complete cds 42 2.4
10gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, com... 42 2.4
11emb|X65292.1|GGVIG G.gallus mRNA for vigilin 42 2.4
12ref|NM_205096.1| Gallus gallus high density lipoprotein binding ... 42 2.4
13gb|AC023043.8| Homo sapiens chromosome 18, clone RP11-49I11, com... 42 2.4
14gb|AC120838.10| Pan troglodytes clone ch251-239a19, complete seq... 42 2.4
15gb|AC055840.10| Homo sapiens chromosome 18, clone RP11-645I23, c... 42 2.4
16gb|AC019322.8| Homo sapiens chromosome 15, clone RP11-382B18, co... 42 2.4
17dbj|AB168516.1| Macaca fascicularis testis cDNA clone: QtsA-1271... 42 2.4
18gb|AC111169.7| Homo sapiens chromosome 15, clone RP11-20D7, comp... 42 2.4
19gb|AC135731.6| Homo sapiens chromosome 15, clone RP11-261B23, co... 42 2.4
20gb|AC068448.10| Homo sapiens chromosome 15, clone RP11-624A21, c... 42 2.4
21gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, co... 42 2.4
22gb|AC113055.9| Mus musculus chromosome 5, clone RP23-251M20, com... 40 9.4
23gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's ... 40 9.4
24gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome... 40 9.4
25gb|AC147101.2| Mus musculus BAC clone RP23-455H16 from chromosom... 40 9.4
26gb|AC132582.3| Mus musculus BAC clone RP24-319N10 from chromosom... 40 9.4
27gb|AC126253.3| Mus musculus BAC clone RP24-119M15 from chromosom... 40 9.4
28gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, compl... 40 9.4
29gb|DQ479851.1| Homo sapiens ubiquitin A-52 residue ribosomal pro... 40 9.4
30emb|AL136382.6| Human DNA sequence from clone RP5-977L11 on chro... 40 9.4
31gb|AC165272.2| Mus musculus BAC clone RP24-296O4 from chromosome... 40 9.4
32gb|AC159892.2| Mus musculus BAC clone RP23-313P23 from chromosom... 40 9.4
33gb|AC022450.5| Homo sapiens chromosome 5 clone RP11-96F10, compl... 40 9.4
34gb|AC084361.19| Homo sapiens 12 BAC RP11-364C11 (Roswell Park Ca... 40 9.4
35gb|AC099022.1| Drosophila melanogaster, chromosome 2L, region 23... 40 9.4
36gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosom... 40 9.4
37gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 40 9.4
38gb|AC142452.5| Mus musculus BAC clone RP24-266E20 from 3, comple... 40 9.4
39gb|AC005554.2|AC005554 Drosophila melanogaster, chromosome 2L, r... 40 9.4
40gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10... 40 9.4
41gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230... 40 9.4
42gb|AC120353.9| Mus musculus chromosome 5, clone RP24-239E2, comp... 40 9.4
43gb|AC005253.1|AC005253 Homo sapiens chromosome 19, cosmid R26445... 40 9.4
44gb|AC144778.3| Mus musculus BAC clone RP23-278A22 from 6, comple... 40 9.4
45emb|AJ238085.1|DME238085 Drosophila melanogaster single P{lacW} ... 40 9.4
46gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, compl... 40 9.4 
>ref|XM_464016.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1605

 Score =  343 bits (173), Expect = 5e-91
 Identities = 374/441 (84%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcagaagcacgagacattctcggtcttcatgaccaggttgcatgttgagtagatggacgc 293
            ||||||||| || |||||||||||  |||||||||||||||| || ||||||||||| ||
Sbjct: 1605 tcagaagcaagaaacattctcggttctcatgaccaggttgcaagtcgagtagatggaagc 1546

                                                                        
Query: 294  cgcagcagcttgcactgcccactcactctcagagatctccgggttcttcagcttccataa 353
             ||||||||||||||||||||||| |||||||   |||||| ||||||||| ||||||||
Sbjct: 1545 ggcagcagcttgcactgcccactcgctctcaggagtctccgagttcttcagtttccataa 1486

                                                                        
Query: 354  ttcagccattgggcctagcagtggagcctcacaagtcacttgttttaggcctttatcaca 413
            |||||||||||| ||||  | ||||||||| |||| ||  | | | || ||||| |||||
Sbjct: 1485 ttcagccattggtcctactaatggagcctcgcaagccatgtatctgagccctttctcaca 1426

                                                                        
Query: 414  attctgcaacattccttgcacttccttcaaccgaatttccaagtgcctcccttcctcctg 473
            ||||     |||| |||||||||||||||||||| | ||||  ||| |||| ||||||||
Sbjct: 1425 attcatttgcatttcttgcacttccttcaaccgattctccagatgcatcccctcctcctg 1366

                                                                        
Query: 474  cagtgttctttccatctgaaggaatagagacctccaccgtgcaacatgttcttctgaaac 533
             |||||||| ||||||||||| || ||||||| ||| ||||| |||||  |||||| |||
Sbjct: 1365 aagtgttctgtccatctgaagaaaaagagaccgccatcgtgccacatgcgcttctggaac 1306

                                                                        
Query: 534  tgtttttccagtgggcccagcttcagaagaatgtgcaatggatggttcgttctcttgact 593
            |||||||||||| |  ||| | |||||||||||| ||| ||||||||||||||||||  |
Sbjct: 1305 tgtttttccagtagatccaccatcagaagaatgtacaacggatggttcgttctcttggtt 1246

                                                                        
Query: 594  agatgagaattctgttgatatcaggtgcggcagttcagtttgaagagcattcctgactct 653
            | |||| |||||||||||||| ||||  ||||||||||| ||||| ||||||||||||||
Sbjct: 1245 atatgaaaattctgttgatattaggtagggcagttcagtctgaagggcattcctgactct 1186

                                 
Query: 654  cttcctactgcgcttcaaagc 674
            |||| | ||||||||||||||
Sbjct: 1185 cttcttgctgcgcttcaaagc 1165
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  194 bits (98), Expect = 3e-46
 Identities = 185/214 (86%)
 Strand = Plus / Plus

                                                                           
Query: 461     tcccttcctcctgcagtgttctttccatctgaaggaatagagacctccaccgtgcaacat 520
               |||| |||||||| |||||||| ||||||||||| || ||||||| ||| ||||| ||||
Sbjct: 1673843 tcccctcctcctgaagtgttctgtccatctgaagaaaaagagaccgccatcgtgccacat 1673902

                                                                           
Query: 521     gttcttctgaaactgtttttccagtgggcccagcttcagaagaatgtgcaatggatggtt 580
               |  |||||| ||||||||||||||| |  ||| | |||||||||||| ||| ||||||||
Sbjct: 1673903 gcgcttctggaactgtttttccagtagatccaccatcagaagaatgtacaacggatggtt 1673962

                                                                           
Query: 581     cgttctcttgactagatgagaattctgttgatatcaggtgcggcagttcagtttgaagag 640
               ||||||||||  || |||| |||||||||||||| ||||  ||||||||||| ||||| |
Sbjct: 1673963 cgttctcttggttatatgaaaattctgttgatattaggtagggcagttcagtctgaaggg 1674022

                                                 
Query: 641     cattcctgactctcttcctactgcgcttcaaagc 674
               ||||||||||||||||| | ||||||||||||||
Sbjct: 1674023 cattcctgactctcttcttgctgcgcttcaaagc 1674056



 Score =  125 bits (63), Expect = 2e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                           
Query: 231     agatcagaagcacgagacattctcggtcttcatgaccaggttgcatgttgagtagatgga 290
               |||||||||||| || |||||||||||  |||||||||||||||| || |||||||||||
Sbjct: 1673190 agatcagaagcaagaaacattctcggttctcatgaccaggttgcaagtcgagtagatgga 1673249

                                                                          
Query: 291     cgccgcagcagcttgcactgcccactcactctcagagatctccgggttcttcagcttcc 349
                || ||||||||||||||||||||||| |||||||   |||||| ||||||||| ||||
Sbjct: 1673250 agcggcagcagcttgcactgcccactcgctctcaggagtctccgagttcttcagtttcc 1673308



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                           
Query: 348     ccataattcagccattgggcctagcagtggagcctcacaagtcacttgttttaggccttt 407
               |||||||||||||||||| ||||  | ||||||||| |||| ||  | | | || |||||
Sbjct: 1673571 ccataattcagccattggtcctactaatggagcctcgcaagccatgtatctgagcccttt 1673630

                                                       
Query: 408     atcacaattctgcaacattccttgcacttccttcaaccga 447
                |||||||||     |||| ||||||||||||||||||||
Sbjct: 1673631 ctcacaattcatttgcatttcttgcacttccttcaaccga 1673670
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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1007_D04
          Length = 125503

 Score =  194 bits (98), Expect = 3e-46
 Identities = 185/214 (86%)
 Strand = Plus / Plus

                                                                          
Query: 461    tcccttcctcctgcagtgttctttccatctgaaggaatagagacctccaccgtgcaacat 520
              |||| |||||||| |||||||| ||||||||||| || ||||||| ||| ||||| ||||
Sbjct: 110946 tcccctcctcctgaagtgttctgtccatctgaagaaaaagagaccgccatcgtgccacat 111005

                                                                          
Query: 521    gttcttctgaaactgtttttccagtgggcccagcttcagaagaatgtgcaatggatggtt 580
              |  |||||| ||||||||||||||| |  ||| | |||||||||||| ||| ||||||||
Sbjct: 111006 gcgcttctggaactgtttttccagtagatccaccatcagaagaatgtacaacggatggtt 111065

                                                                          
Query: 581    cgttctcttgactagatgagaattctgttgatatcaggtgcggcagttcagtttgaagag 640
              ||||||||||  || |||| |||||||||||||| ||||  ||||||||||| ||||| |
Sbjct: 111066 cgttctcttggttatatgaaaattctgttgatattaggtagggcagttcagtctgaaggg 111125

                                                
Query: 641    cattcctgactctcttcctactgcgcttcaaagc 674
              ||||||||||||||||| | ||||||||||||||
Sbjct: 111126 cattcctgactctcttcttgctgcgcttcaaagc 111159



 Score =  125 bits (63), Expect = 2e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                          
Query: 231    agatcagaagcacgagacattctcggtcttcatgaccaggttgcatgttgagtagatgga 290
              |||||||||||| || |||||||||||  |||||||||||||||| || |||||||||||
Sbjct: 110293 agatcagaagcaagaaacattctcggttctcatgaccaggttgcaagtcgagtagatgga 110352

                                                                         
Query: 291    cgccgcagcagcttgcactgcccactcactctcagagatctccgggttcttcagcttcc 349
               || ||||||||||||||||||||||| |||||||   |||||| ||||||||| ||||
Sbjct: 110353 agcggcagcagcttgcactgcccactcgctctcaggagtctccgagttcttcagtttcc 110411



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                          
Query: 348    ccataattcagccattgggcctagcagtggagcctcacaagtcacttgttttaggccttt 407
              |||||||||||||||||| ||||  | ||||||||| |||| ||  | | | || |||||
Sbjct: 110674 ccataattcagccattggtcctactaatggagcctcgcaagccatgtatctgagcccttt 110733

                                                      
Query: 408    atcacaattctgcaacattccttgcacttccttcaaccga 447
               |||||||||     |||| ||||||||||||||||||||
Sbjct: 110734 ctcacaattcatttgcatttcttgcacttccttcaaccga 110773
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>gb|AY106555.1| Zea mays PCO112740 mRNA sequence
          Length = 546

 Score =  168 bits (85), Expect = 2e-38
 Identities = 283/349 (81%)
 Strand = Plus / Minus

                                                                       
Query: 260 tcatgaccaggttgcatgttgagtagatggacgccgcagcagcttgcactgcccactcac 319
           ||||| ||| |||||| || |||||||| || || || ||||||||||| ||||||||||
Sbjct: 359 tcatggccatgttgcaggtcgagtagattgatgcggcggcagcttgcaccgcccactcac 300

                                                                       
Query: 320 tctcagagatctccgggttcttcagcttccataattcagccattgggcctagcagtggag 379
           ||||||| || || |||||||||||||||||||  ||||  || || |||||||| ||||
Sbjct: 299 tctcagaaatatctgggttcttcagcttccatagctcaggaataggtcctagcagaggag 240

                                                                       
Query: 380 cctcacaagtcacttgttttaggcctttatcacaattctgcaacattccttgcacttcct 439
           | |||||  |||  ||||| ||||||||||||||||||     |||| ||||||||| ||
Sbjct: 239 cttcacagctcatgtgtttgaggcctttatcacaattcgattgcatttcttgcacttgct 180

                                                                       
Query: 440 tcaaccgaatttccaagtgcctcccttcctcctgcagtgttctttccatctgaaggaata 499
           |||||||  | ||||  ||  ||||||||||||| |||| ||  |||||||| |  || |
Sbjct: 179 tcaaccggttctccagctgtttcccttcctcctgaagtgctcggtccatctggacaaaca 120

                                                                       
Query: 500 gagacctccaccgtgcaacatgttcttctgaaactgtttttccagtgggcccagcttcag 559
           |||||||||| ||||| |||||  |||||||||||| |||| ||||    ||||| ||| 
Sbjct: 119 gagacctccatcgtgccacatgcgcttctgaaactgctttttcagtacatccagcatcac 60

                                                            
Query: 560 aagaatgtgcaatggatggttcgttctcttgactagatgagaattctgt 608
           | | || ||||||||||| ||||||||||||  ||||||| ||||||||
Sbjct: 59  acgtatttgcaatggatgattcgttctcttggttagatgaaaattctgt 11
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>gb|AY112025.1| Zea mays CL12360_1 mRNA sequence
          Length = 600

 Score =  123 bits (62), Expect = 8e-25
 Identities = 134/158 (84%)
 Strand = Plus / Plus

                                                                       
Query: 260 tcatgaccaggttgcatgttgagtagatggacgccgcagcagcttgcactgcccactcac 319
           ||||||||| |||||| || |||||||| || || ||||| |||||||| |||||||| |
Sbjct: 219 tcatgaccatgttgcaggtcgagtagatcgatgcggcagcggcttgcaccgcccactcgc 278

                                                                       
Query: 320 tctcagagatctccgggttcttcagcttccataattcagccattgggcctagcagtggag 379
           |||| || || |  |||||||||| |||||||| ||||||||| || |||||||| ||||
Sbjct: 279 tctcggaaatatttgggttcttcaacttccatagttcagccataggtcctagcagaggag 338

                                                 
Query: 380 cctcacaagtcacttgttttaggcctttatcacaattc 417
           | ||||| ||||  ||||| ||||||||||||||||||
Sbjct: 339 cttcacaggtcatgtgtttgaggcctttatcacaattc 376



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 461 tcccttcctcctgcagtgttctttccatctgaaggaatagagacctccaccgtgcaacat 520
           ||||||||||||| |||||| | ||||||||||  || ||||||||||| ||||| ||||
Sbjct: 496 tcccttcctcctgaagtgttttgtccatctgaacaaacagagacctccatcgtgccacat 555

                        
Query: 521 gttcttctgaaac 533
           |  ||||||||||
Sbjct: 556 gagcttctgaaac 568
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>emb|AL138788.6| Human DNA sequence from clone RP4-692D3 on chromosome 1p33-34.2
             Contains part of a novel gene, complete sequence
          Length = 67519

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 515   caacatgttcttctgaaactgttttt 540
             |||||||| |||||||||||||||||
Sbjct: 31599 caacatgtacttctgaaactgttttt 31574
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>emb|BX470171.6| Zebrafish DNA sequence from clone CH211-22O10 in linkage group 6,
            complete sequence
          Length = 34033

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 69   acagacagacactcactcactc 90
            ||||||||||||||||||||||
Sbjct: 9031 acagacagacactcactcactc 9010
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>gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH015H17, complete sequence
          Length = 110885

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 68    aacagacagacactcactcact 89
             ||||||||||||||||||||||
Sbjct: 49987 aacagacagacactcactcact 49966
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>gb|AY288982.1| Homo sapiens antigen MLAA-39 mRNA, complete cds
          Length = 706

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 617 ggtgcggcagttcagtttgaagagc 641
           |||||||||||||||||| ||||||
Sbjct: 665 ggtgcggcagttcagtttcaagagc 641
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>gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, complete sequence
          Length = 179508

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    acagacagacactcactcact 89
             |||||||||||||||||||||
Sbjct: 64995 acagacagacactcactcact 64975
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>emb|X65292.1|GGVIG G.gallus mRNA for vigilin
          Length = 4374

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 491  gaaggaatagagacctccacc 511
            |||||||||||||||||||||
Sbjct: 2089 gaaggaatagagacctccacc 2069
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>ref|NM_205096.1| Gallus gallus high density lipoprotein binding protein (vigilin)
            (HDLBP), mRNA
          Length = 4374

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 491  gaaggaatagagacctccacc 511
            |||||||||||||||||||||
Sbjct: 2089 gaaggaatagagacctccacc 2069
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>gb|AC023043.8| Homo sapiens chromosome 18, clone RP11-49I11, complete sequence
          Length = 185278

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    tcccttcctcctgcagtgttc 481
              |||||||||||||||||||||
Sbjct: 172146 tcccttcctcctgcagtgttc 172166
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>gb|AC120838.10| Pan troglodytes clone ch251-239a19, complete sequence
          Length = 150256

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    acagacagacactcactcact 89
             |||||||||||||||||||||
Sbjct: 13668 acagacagacactcactcact 13648
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>gb|AC055840.10| Homo sapiens chromosome 18, clone RP11-645I23, complete sequence
          Length = 175293

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 461  tcccttcctcctgcagtgttc 481
            |||||||||||||||||||||
Sbjct: 6157 tcccttcctcctgcagtgttc 6177
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>gb|AC019322.8| Homo sapiens chromosome 15, clone RP11-382B18, complete sequence
          Length = 175205

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    acagacagacactcactcact 89
             |||||||||||||||||||||
Sbjct: 15963 acagacagacactcactcact 15943
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>dbj|AB168516.1| Macaca fascicularis testis cDNA clone: QtsA-12711, similar to human
            hypothetical protein FLJ35757 (FLJ35757), mRNA, RefSeq:
            NM_152598.1
          Length = 2410

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 452  ccaagtgcctcccttcctcct 472
            |||||||||||||||||||||
Sbjct: 2050 ccaagtgcctcccttcctcct 2070
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>gb|AC111169.7| Homo sapiens chromosome 15, clone RP11-20D7, complete sequence
          Length = 129543

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    acagacagacactcactcact 89
             |||||||||||||||||||||
Sbjct: 28933 acagacagacactcactcact 28913
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>gb|AC135731.6| Homo sapiens chromosome 15, clone RP11-261B23, complete sequence
          Length = 123089

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 69   acagacagacactcactcact 89
            |||||||||||||||||||||
Sbjct: 4065 acagacagacactcactcact 4085
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>gb|AC068448.10| Homo sapiens chromosome 15, clone RP11-624A21, complete sequence
          Length = 165208

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     acagacagacactcactcact 89
              |||||||||||||||||||||
Sbjct: 151823 acagacagacactcactcact 151843
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>gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, complete sequence
          Length = 199198

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    acagacagacactcactcact 89
             |||||||||||||||||||||
Sbjct: 78724 acagacagacactcactcact 78744
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>gb|AC113055.9| Mus musculus chromosome 5, clone RP23-251M20, complete sequence
          Length = 185733

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 452   ccaagtgcctcccttcctcctgca 475
             |||||| |||||||||||||||||
Sbjct: 60379 ccaagtccctcccttcctcctgca 60356
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>gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 214442

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     acagacagacactcactcac 88
              ||||||||||||||||||||
Sbjct: 147205 acagacagacactcactcac 147224
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>gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome 12, complete sequence
          Length = 221662

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 463    ccttcctcctgcagtgttctttcc 486
              |||||| |||||||||||||||||
Sbjct: 147914 ccttccacctgcagtgttctttcc 147937
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>gb|AC147101.2| Mus musculus BAC clone RP23-455H16 from chromosome 12, complete
             sequence
          Length = 168258

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    acactcactcactcagagactaca 100
             |||| |||||||||||||||||||
Sbjct: 89777 acacacactcactcagagactaca 89800
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>gb|AC132582.3| Mus musculus BAC clone RP24-319N10 from chromosome 12, complete sequence
          Length = 159310

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     acactcactcactcagagactaca 100
              |||| |||||||||||||||||||
Sbjct: 121309 acacacactcactcagagactaca 121332
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>gb|AC126253.3| Mus musculus BAC clone RP24-119M15 from chromosome 14, complete sequence
          Length = 172035

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    gtagatggacgccgcagcag 301
              ||||||||||||||||||||
Sbjct: 155374 gtagatggacgccgcagcag 155355
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>gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, complete sequence
          Length = 206833

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     ctcagagactacaggtgctt 107
              ||||||||||||||||||||
Sbjct: 120981 ctcagagactacaggtgctt 120962
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>gb|DQ479851.1| Homo sapiens ubiquitin A-52 residue ribosomal protein fusion product
            1 (UBA52) gene, complete cds
          Length = 9411

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  tgcctcccttcctcctgcag 476
            ||||||||||||||||||||
Sbjct: 3225 tgcctcccttcctcctgcag 3244
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>emb|AL136382.6| Human DNA sequence from clone RP5-977L11 on chromosome 1p22.3-31.2
             Contains the 3' end of a novel gene (KIAA1229), complete
             sequence
          Length = 136387

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   ttctgcaacattccttgcac 434
             ||||||||||||||||||||
Sbjct: 15275 ttctgcaacattccttgcac 15256
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>gb|AC165272.2| Mus musculus BAC clone RP24-296O4 from chromosome 14, complete sequence
          Length = 178348

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gtagatggacgccgcagcag 301
              ||||||||||||||||||||
Sbjct: 163310 gtagatggacgccgcagcag 163329
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>gb|AC159892.2| Mus musculus BAC clone RP23-313P23 from chromosome 9, complete sequence
          Length = 199351

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    cagtgttctttccatctgaa 493
              ||||||||||||||||||||
Sbjct: 108789 cagtgttctttccatctgaa 108770
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>gb|AC022450.5| Homo sapiens chromosome 5 clone RP11-96F10, complete sequence
          Length = 160076

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   cttctgaaactgtttttcca 543
             ||||||||||||||||||||
Sbjct: 51702 cttctgaaactgtttttcca 51683
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>gb|AC084361.19| Homo sapiens 12 BAC RP11-364C11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172853

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   atgtgcaatggatggttcgt 583
             ||||||||||||||||||||
Sbjct: 10537 atgtgcaatggatggttcgt 10518
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>gb|AC099022.1| Drosophila melanogaster, chromosome 2L, region 23C-23D, BAC clone
              BACR48B06, complete sequence
          Length = 184554

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 665    gcttcaaagcagcaagccgc 684
              ||||||||||||||||||||
Sbjct: 143785 gcttcaaagcagcaagccgc 143766
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>gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosome 6, complete sequence
          Length = 171141

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 583    ttctcttgactagatgagaattct 606
              |||||||||| |||||||||||||
Sbjct: 130800 ttctcttgacaagatgagaattct 130777
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     acagacagacactcactcac 88
              ||||||||||||||||||||
Sbjct: 154880 acagacagacactcactcac 154899
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>gb|AC142452.5| Mus musculus BAC clone RP24-266E20 from 3, complete sequence
          Length = 149936

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 517    acatgttcttctgaaactgttttt 540
              ||||||| ||||||||||||||||
Sbjct: 139346 acatgtttttctgaaactgttttt 139369
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>gb|AC005554.2|AC005554 Drosophila melanogaster, chromosome 2L, region 23C4-23D4, P1 clones
             DS02380 and DS06823, complete sequence
          Length = 93375

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 665   gcttcaaagcagcaagccgc 684
             ||||||||||||||||||||
Sbjct: 32377 gcttcaaagcagcaagccgc 32396
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>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete
              sequence
          Length = 314957

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 665    gcttcaaagcagcaagccgc 684
              ||||||||||||||||||||
Sbjct: 229524 gcttcaaagcagcaagccgc 229543
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>gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230-206L9, complete
              sequence
          Length = 215015

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     acagacagacactcactcac 88
              ||||||||||||||||||||
Sbjct: 154880 acagacagacactcactcac 154899
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>gb|AC120353.9| Mus musculus chromosome 5, clone RP24-239E2, complete sequence
          Length = 182659

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 452    ccaagtgcctcccttcctcctgca 475
              |||||| |||||||||||||||||
Sbjct: 172368 ccaagtccctcccttcctcctgca 172345
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>gb|AC005253.1|AC005253 Homo sapiens chromosome 19, cosmid R26445, complete sequence
          Length = 39760

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   tgcctcccttcctcctgcag 476
             ||||||||||||||||||||
Sbjct: 27537 tgcctcccttcctcctgcag 27556
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>gb|AC144778.3| Mus musculus BAC clone RP23-278A22 from 6, complete sequence
          Length = 187115

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 583   ttctcttgactagatgagaattct 606
             |||||||||| |||||||||||||
Sbjct: 47420 ttctcttgacaagatgagaattct 47397
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>emb|AJ238085.1|DME238085 Drosophila melanogaster single P{lacW} element insertion 3' end,
           strain l(2)k08224
          Length = 347

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 665 gcttcaaagcagcaagccgc 684
           ||||||||||||||||||||
Sbjct: 219 gcttcaaagcagcaagccgc 238
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>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence
          Length = 187685

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   cccttcctcctgcagtgttc 481
             ||||||||||||||||||||
Sbjct: 84113 cccttcctcctgcagtgttc 84094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,537,398
Number of Sequences: 3902068
Number of extensions: 6537398
Number of successful extensions: 136709
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136554
Number of HSP's gapped (non-prelim): 153
length of query: 684
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 661
effective length of database: 17,143,297,704
effective search space: 11331719782344
effective search space used: 11331719782344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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