ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20g18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192107.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 298 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 357 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 869 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 810 Query: 358 ga 359 || Sbjct: 809 ga 808 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Minus Query: 516 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggt 567 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct: 642 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggt 591
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 298 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 357 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 28364422 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 28364481 Query: 358 ga 359 || Sbjct: 28364482 ga 28364483 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Plus Query: 516 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggt 567 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct: 28364649 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggt 28364700
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 298 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 357 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 79522 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 79581 Query: 358 ga 359 || Sbjct: 79582 ga 79583 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Plus Query: 516 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggt 567 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct: 79749 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggt 79800
>dbj|AK073996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071E20, full insert sequence Length = 1236 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 298 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 357 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 990 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 931 Query: 358 ga 359 || Sbjct: 930 ga 929 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Minus Query: 516 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggt 567 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct: 763 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggt 712
>dbj|AK061158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H01, full insert sequence Length = 1162 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 298 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 357 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 987 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 928 Query: 358 ga 359 || Sbjct: 927 ga 926 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Minus Query: 516 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggt 567 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct: 760 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggt 709
>dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F5N5 Length = 71327 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 474 ctcgggagttttatttttgcttgtgtc 500 ||||||| ||||||||||||||||||| Sbjct: 12026 ctcgggacttttatttttgcttgtgtc 12000
>gb|U76670.1|ATU76670 Arabidopsis thaliana recA-like protein (AtDMC1) gene, complete cds Length = 8017 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 474 ctcgggagttttatttttgcttgtgtc 500 ||||||| ||||||||||||||||||| Sbjct: 5426 ctcgggacttttatttttgcttgtgtc 5452
>dbj|D45415.1|ATHARLIM15 Arabidopsis thaliana ArLIM15 gene for recA-like protein, complete cds (exon1-15) Length = 5135 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 474 ctcgggagttttatttttgcttgtgtc 500 ||||||| ||||||||||||||||||| Sbjct: 2074 ctcgggacttttatttttgcttgtgtc 2100
>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 250421 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 260 ctttaaccttgttaacaagttctgcc 285 |||||||||| ||||||||||||||| Sbjct: 203139 ctttaaccttattaacaagttctgcc 203164
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222553 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 260 ctttaaccttgttaacaagttctgcc 285 |||||||||| ||||||||||||||| Sbjct: 192475 ctttaaccttattaacaagttctgcc 192450
>gb|AY622606.1| Candida dubliniensis MTL alpha 2, OPB alpha, PIK alpha, and MTL alpha 1 genes, complete cds; and PAP alpha gene, partial cds Length = 8593 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 245 atcattgagttgtaactttaacctt 269 ||||||||||||||||| ||||||| Sbjct: 6574 atcattgagttgtaactgtaacctt 6550
>gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome 5, complete sequence Length = 187269 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 37681 caacaatggcagctcgggcct 37661
>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence Length = 208499 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 528 tctggaaatggaagagcctggagag 552 ||||||||||| ||||||||||||| Sbjct: 97403 tctggaaatggcagagcctggagag 97427
>gb|AC129215.3| Mus musculus BAC clone RP24-435H23 from chromosome 5, complete sequence Length = 140936 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 5293 caacaatggcagctcgggcct 5313
>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence Length = 192062 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 556 tcaattttaggtgtttggcct 576 ||||||||||||||||||||| Sbjct: 123122 tcaattttaggtgtttggcct 123102
>gb|BC038396.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA clone MGC:18969 IMAGE:3987227), complete cds Length = 2449 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 2014 caacaatggcagctcgggcct 1994
>gb|BC023072.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA clone IMAGE:5357477), with apparent retained intron Length = 2903 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 2474 caacaatggcagctcgggcct 2454
>gb|BC021421.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA clone IMAGE:5012211), containing frame-shift errors Length = 1271 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 814 caacaatggcagctcgggcct 794
>dbj|AK150038.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530123D08 product:FLN29 gene product, full insert sequence Length = 2447 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 2039 caacaatggcagctcgggcct 2019
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence Length = 175840 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 tggtggcagcatatgttcttg 448 ||||||||||||||||||||| Sbjct: 40958 tggtggcagcatatgttcttg 40978
>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence Length = 175579 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 tggtggcagcatatgttcttg 448 ||||||||||||||||||||| Sbjct: 128090 tggtggcagcatatgttcttg 128110
>dbj|AK003586.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110008K06 product:hypothetical protein, full insert sequence Length = 933 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 523 caacaatggcagctcgggcct 503
>ref|NM_172275.1| Mus musculus TRAF type zinc finger domain containing 1 (Trafd1), mRNA Length = 2449 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 2014 caacaatggcagctcgggcct 1994
>dbj|AK042299.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630079M19 product:hypothetical protein, full insert sequence Length = 1124 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 716 caacaatggcagctcgggcct 696
>dbj|AK211451.1| Mus musculus cDNA, clone:Y2G0121M21, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000042312, based on BLAT search Length = 405 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 164 caacaatggcagctcgggcct 144
>dbj|AK212088.1| Mus musculus cDNA, clone:Y2G0123N06, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000042312, based on BLAT search Length = 408 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 caacaatggcagctcgggcct 340 ||||||||||||||||||||| Sbjct: 168 caacaatggcagctcgggcct 148
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 gtcatgcaatgaaagatacat 190 ||||||||||||||||||||| Sbjct: 421250 gtcatgcaatgaaagatacat 421230
>ref|XM_509728.1| PREDICTED: Pan troglodytes similar to KIAA0865 protein (LOC452655), mRNA Length = 1065 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 aggcacaaatcattgagttg 256 |||||||||||||||||||| Sbjct: 401 aggcacaaatcattgagttg 382
>gb|AC161798.6| Mus musculus chromosome 7, clone RP23-267I20, complete sequence Length = 182519 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tggctgcaacaatggcagct 333 |||||||||||||||||||| Sbjct: 86509 tggctgcaacaatggcagct 86528
>ref|NM_177250.2| Mus musculus leucine rich repeat neuronal 6D (Lrrn6d), mRNA Length = 2943 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gtccaggcggcggcggaggc 308 |||||||||||||||||||| Sbjct: 1404 gtccaggcggcggcggaggc 1385
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24, complete sequence Length = 137721 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ggcggcggcggaggcacggg 313 |||||||||||||||||||| Sbjct: 91809 ggcggcggcggaggcacggg 91828
>gb|AC134572.4| Mus musculus BAC clone RP23-435M15 from chromosome 3, complete sequence Length = 202037 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 agttttatttttgcttgtgt 499 |||||||||||||||||||| Sbjct: 175194 agttttatttttgcttgtgt 175175
>gb|AC132428.3| Mus musculus BAC clone RP23-203K20 from chromosome 7, complete sequence Length = 194926 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tggctgcaacaatggcagct 333 |||||||||||||||||||| Sbjct: 18280 tggctgcaacaatggcagct 18261
>ref|XM_540117.2| PREDICTED: Canis familiaris similar to Potassium channel subfamily K member 3 (Acid-sensitive potassium channel protein TASK-1) (TWIK-related acid-sensitive K(+) channel 1) (Two pore potassium channel KT3.1) (LOC483002), mRNA Length = 1188 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 ggcggcggcggaggcacgggtggc 317 ||||||||||| |||||||||||| Sbjct: 811 ggcggcggcgggggcacgggtggc 834
>gb|AC122299.5| Mus musculus BAC clone RP23-270L23 from chromosome 5, complete sequence Length = 209091 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tggctgcaacaatggcagct 333 |||||||||||||||||||| Sbjct: 124499 tggctgcaacaatggcagct 124518
>gb|AC131726.3| Mus musculus BAC clone RP23-132P9 from 3, complete sequence Length = 190554 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 agttttatttttgcttgtgt 499 |||||||||||||||||||| Sbjct: 21254 agttttatttttgcttgtgt 21235
>gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, complete sequence Length = 190130 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gtccaggcggcggcggaggc 308 |||||||||||||||||||| Sbjct: 133691 gtccaggcggcggcggaggc 133710
>ref|XM_738042.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000399.01.0) partial mRNA Length = 2373 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ttttatttttgcttgtgtcg 501 |||||||||||||||||||| Sbjct: 613 ttttatttttgcttgtgtcg 594
>emb|AL590083.8| Human DNA sequence from clone RP11-475D8 on chromosome X Contains a novel gene, the GPR23 gene for G protein-coupled receptor 23 and a 60S ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 127780 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 agttttatttttgcttgtgt 499 |||||||||||||||||||| Sbjct: 72308 agttttatttttgcttgtgt 72289
>emb|AL353143.14| Human DNA sequence from clone RP11-383F12 on chromosome 13 Contains part of a novel gene (including KIAA0865), possible ortholog of rat myosin heavy chain Myr 8 (Loc192253) and a novel gene, complete sequence Length = 170276 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 aggcacaaatcattgagttg 256 |||||||||||||||||||| Sbjct: 146067 aggcacaaatcattgagttg 146048
>emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072N21, complete sequence Length = 130433 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ggcggcggcggaggcacggg 313 |||||||||||||||||||| Sbjct: 86426 ggcggcggcggaggcacggg 86407
>emb|AL590146.2| Zebrafish DNA sequence from clone RP71-20I5 in linkage group 9 Contains a gene for a novel protein similar to human FLJ20730 protein, a gene for a novel protein similar to rat steroid sensitive gene-1 protein (SSG-1), a gene for a novel protein similar to vertebrate coagulation factor V and VIII, a gene for a novel protein similar to human G-protein coupled receptor RE2, a gene for a novel transcript and a CpG island, complete sequence Length = 121086 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 agttttatttttgcttgtgt 499 |||||||||||||||||||| Sbjct: 35641 agttttatttttgcttgtgt 35660
>emb|AL713962.14| Mouse DNA sequence from clone RP23-3D5 on chromosome 11, complete sequence Length = 230198 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gcagcatatgttcttgaact 452 |||||||||||||||||||| Sbjct: 55473 gcagcatatgttcttgaact 55454
>gb|AC154697.2| Mus musculus BAC clone RP23-136A22 from chromosome 13, complete sequence Length = 202379 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 taattgtcatgcaatgaaagatacatgt 192 ||||||| ||||||| |||||||||||| Sbjct: 11476 taattgtaatgcaattaaagatacatgt 11449
>gb|AC091521.19| Mus musculus chromosome 1 clone rp23-145f9, complete sequence Length = 198784 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tggctgcaacaatggcagct 333 |||||||||||||||||||| Sbjct: 112961 tggctgcaacaatggcagct 112942
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tccaggcggcggcggaggca 309 |||||||||||||||||||| Sbjct: 4159906 tccaggcggcggcggaggca 4159887
>ref|XM_693935.1| PREDICTED: Danio rerio similar to fibroblast growth factor 19 (LOC573813), mRNA Length = 628 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 caacacacttacagaggaacacac 163 |||||||||| ||||||||||||| Sbjct: 466 caacacactttcagaggaacacac 489
>ref|NM_001012246.1| Danio rerio fibroblast growth factor 19 (fgf19), mRNA Length = 633 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 caacacacttacagaggaacacac 163 |||||||||| ||||||||||||| Sbjct: 471 caacacactttcagaggaacacac 494
>gb|AC159231.2| Mus musculus BAC clone RP24-387F20 from chromosome 13, complete sequence Length = 150809 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 taattgtcatgcaatgaaagatacatgt 192 ||||||| ||||||| |||||||||||| Sbjct: 9561 taattgtaatgcaattaaagatacatgt 9588
>dbj|AK042286.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630078J04 product:hypothetical Cysteine-rich flanking region, C-terminal/Leucine-rich repeat/Leucine-rich repeat, typical subtype containing protein, full insert sequence Length = 2178 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gtccaggcggcggcggaggc 308 |||||||||||||||||||| Sbjct: 2105 gtccaggcggcggcggaggc 2086
>dbj|AK040952.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530050P17 product:hypothetical Cysteine-rich flanking region, C-terminal/Cysteine-rich flanking region, N-terminal/Leucine-rich repeat/Immunoglobulin and major histocompatibility complex domain/Immunoglobulin C-2 type/Leucine-rich repeat, typical subtype/Immunoglobulin subtype containing protein, full insert sequence Length = 2943 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gtccaggcggcggcggaggc 308 |||||||||||||||||||| Sbjct: 1404 gtccaggcggcggcggaggc 1385
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ggcggcggcggaggcacggg 313 |||||||||||||||||||| Sbjct: 8275913 ggcggcggcggaggcacggg 8275894
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ggcggcggcggaggcacggg 313 |||||||||||||||||||| Sbjct: 7725146 ggcggcggcggaggcacggg 7725127
>ref|NM_015011.1| Homo sapiens myosin heavy chain Myr 8 (MYR8), mRNA Length = 6874 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 aggcacaaatcattgagttg 256 |||||||||||||||||||| Sbjct: 3560 aggcacaaatcattgagttg 3541
>ref|XM_342474.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930018P22 (LOC362175), mRNA Length = 814 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ccaggcggcggcggaggcac 310 |||||||||||||||||||| Sbjct: 307 ccaggcggcggcggaggcac 288
>dbj|AB183515.1| Danio rerio fgf19 mRNA for fibroblast growth factor 19, complete cds Length = 633 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 caacacacttacagaggaacacac 163 |||||||||| ||||||||||||| Sbjct: 471 caacacactttcagaggaacacac 494
>dbj|AK120678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162H21, full insert sequence Length = 1558 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ggcggcggcggaggcacggg 313 |||||||||||||||||||| Sbjct: 155 ggcggcggcggaggcacggg 174
>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete sequence Length = 233270 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tggctgcaacaatggcagct 333 |||||||||||||||||||| Sbjct: 56538 tggctgcaacaatggcagct 56519
>dbj|AB020672.2| Homo sapiens mRNA for KIAA0865 protein, partial cds Length = 6864 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 aggcacaaatcattgagttg 256 |||||||||||||||||||| Sbjct: 3560 aggcacaaatcattgagttg 3541
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ggcggcggcggaggcacggg 313 |||||||||||||||||||| Sbjct: 7795233 ggcggcggcggaggcacggg 7795214
>emb|AL929586.19| Zebrafish DNA sequence from clone CH211-188I17, complete sequence Length = 154808 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 caacacacttacagaggaacacac 163 |||||||||| ||||||||||||| Sbjct: 121716 caacacactttcagaggaacacac 121693
>gb|AC167659.7| Mus musculus chromosome 7, clone RP23-165I8, complete sequence Length = 248723 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tggctgcaacaatggcagct 333 |||||||||||||||||||| Sbjct: 91606 tggctgcaacaatggcagct 91587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,548,877 Number of Sequences: 3902068 Number of extensions: 5548877 Number of successful extensions: 128399 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128018 Number of HSP's gapped (non-prelim): 381 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
