ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20g17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194020.1| Oryza sativa (japonica cultivar-group), predic... 480 e-132
2dbj|AK120610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 480 e-132
3dbj|AK121146.1| Oryza sativa (japonica cultivar-group) cDNA clon... 474 e-130
4gb|AY108156.1| Zea mays PCO111811 mRNA sequence 315 1e-82
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
6dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
7gb|AC104036.8| Homo sapiens chromosome 8, clone RP11-665N23, com... 50 0.009
8gb|AC015476.10| Homo sapiens, clone RP11-16G11, complete sequence 50 0.009
9gb|AC092656.1| Homo sapiens BAC clone RP11-455G16 from 4, comple... 44 0.54
10gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, comp... 44 0.54
11ref|NM_115016.1| Arabidopsis thaliana ATP binding / transmembran... 42 2.1
12gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 42 2.1
13emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segmen... 42 2.1
14emb|AL133452.1|ATF26O13 Arabidopsis thaliana DNA chromosome 3, B... 42 2.1
15emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, B... 42 2.1
16dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 42 2.1
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
18gb|AC159038.1| Pan troglodytes BAC clone CH251-156A12 from chrom... 42 2.1
19gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complet... 42 2.1
20dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
21gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 8.5
22gb|AC087326.10| Trypanosoma brucei chromosome 4 clone RPCI93-30O... 40 8.5
23gb|AC091452.2| Mus musculus chromosome X clone RP23-124C16, comp... 40 8.5
24gb|AC144932.6| Mus musculus BAC clone RP24-462H2 from chromosome... 40 8.5
25gb|AC123798.5| Mus musculus BAC clone RP24-334O8 from chromosome... 40 8.5
26gb|AC073270.6| Homo sapiens BAC clone RP11-468B6 from 7, complet... 40 8.5
27ref|XM_733992.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 8.5
28gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosom... 40 8.5
29emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chr... 40 8.5
30gb|AC119163.23| Mus musculus chromosome 3, clone RP24-527P22, co... 40 8.5
31emb|AL353681.8| Human DNA sequence from clone RP1-158P9 on chrom... 40 8.5
32emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in l... 40 8.5
33emb|CR931811.1| Medicago truncatula chromosome 5 clone mte1-56a1... 40 8.5
34gb|AC093435.3| Drosophila melanogaster 3L BAC RP98-7A5 (Roswell ... 40 8.5
35gb|AC092185.3| Homo sapiens 3q BAC RP11-148O7 (Roswell Park Canc... 40 8.5
36gb|AC096675.2| Homo sapiens chromosome 1 clone RP11-80N9, comple... 40 8.5
37gb|AC079403.3| Homo sapiens BAC clone RP11-704A20 from 4, comple... 40 8.5
38gb|AY948959.1| Leptodactylus elenae 16S ribosomal RNA gene, part... 40 8.5
39ref|XM_684608.1| PREDICTED: Danio rerio similar to Zinc finger p... 40 8.5
40gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35... 40 8.5
41emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chr... 40 8.5
42gb|AC146336.1| Gallus gallus BAC clone CH261-15P9 from chromosom... 40 8.5
43emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in... 40 8.5
44emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chr... 40 8.5 
>ref|NM_194020.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1677

 Score =  480 bits (242), Expect = e-132
 Identities = 494/578 (85%)
 Strand = Plus / Minus

                                                                        
Query: 44   gctaatccgatgtgatcatcatcttcagcattggatccatggtgtgctacagtgccccga 103
            |||||||| ||||| ||||| || |||||| |   ||||||| ||||  ||| || ||| 
Sbjct: 1661 gctaatccaatgtggtcatcttcctcagcactaagtccatggcgtgcagcagagctccgg 1602

                                                                        
Query: 104  tttcgagttgtaacattggtgataatattagtggtcttttgagaagcaagagcttttagt 163
            |||||||||||||| ||||| |||| |||||| | |||||||  | |||||||| | | |
Sbjct: 1601 tttcgagttgtaacgttggtaataacattagtagccttttgaccaacaagagctctcaat 1542

                                                                        
Query: 164  ttgttccctgtagctagcagaagtaagcttcgcatatgttgcttctgctcttttggacta 223
            |||||||||| ||| |||| |||||||||||||||| || |||| || ||||||||||| 
Sbjct: 1541 ttgttccctgaagcaagcaaaagtaagcttcgcataagtagcttttgatcttttggactt 1482

                                                                        
Query: 224  gcagttttgctcaaagaatcatcaaaagccagcaaatcttcctgcttcatgtctgagagg 283
            ||||||||||||||||| |||||||| || |||||||||||||||||||||| || ||||
Sbjct: 1481 gcagttttgctcaaagactcatcaaaggctagcaaatcttcctgcttcatgtgtgggagg 1422

                                                                        
Query: 284  gatagaagaacctgtttaggtgcaggatctttgtctgatagataaagatatatttctcga 343
            || |||||||||||| ||||||| |||||| | ||||| ||||| | |||||||||||||
Sbjct: 1421 gacagaagaacctgtctaggtgcgggatctctatctgagagatagatatatatttctcga 1362

                                                                        
Query: 344  caaagtccaataagctctgcactcacaacggcattcaattcaacagataagccctgtatt 403
            |||||||||| ||| |||| ||||  || || |||||| |||||||||||||| |||| |
Sbjct: 1361 caaagtccaacaagttctgaactcgtaatggaattcaactcaacagataagccatgtaat 1302

                                                                        
Query: 404  atagaagaaaatagatcctttccaacaaactgcctcagctcagcccggtttgttgcaaca 463
            || |||||||||||||| ||  |||||||||| |||| ||||||||| ||||||||||||
Sbjct: 1301 atggaagaaaatagatctttcgcaacaaactgactcaactcagcccgatttgttgcaaca 1242

                                                                        
Query: 464  gcaaggtgaatcaatgcaccacaaaagggtattactttagtcactgcttcactatctggc 523
            |||||||||||||||||||||||||| || || | ||| || |||||||||||||||| |
Sbjct: 1241 gcaaggtgaatcaatgcaccacaaaaaggaataatttttgtgactgcttcactatctgtc 1182

                                                                        
Query: 524  caactgaacacttcaacagttattctcaaagcaggcagggcagtgccagcattaagcata 583
            ||||||||||||||||||||||| ||||| ||||| |  ||||||    |||||||||||
Sbjct: 1181 caactgaacacttcaacagttatcctcaatgcaggaacagcagtggagacattaagcata 1122

                                                  
Query: 584  agaaatccagtaagagagctggaagcaaatgactccag 621
            ||||||||||| | |||||||||| ||||  |||||||
Sbjct: 1121 agaaatccagtgatagagctggaaacaaacaactccag 1084
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>dbj|AK120610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151I23, full
            insert sequence
          Length = 4041

 Score =  480 bits (242), Expect = e-132
 Identities = 494/578 (85%)
 Strand = Plus / Minus

                                                                        
Query: 44   gctaatccgatgtgatcatcatcttcagcattggatccatggtgtgctacagtgccccga 103
            |||||||| ||||| ||||| || |||||| |   ||||||| ||||  ||| || ||| 
Sbjct: 3869 gctaatccaatgtggtcatcttcctcagcactaagtccatggcgtgcagcagagctccgg 3810

                                                                        
Query: 104  tttcgagttgtaacattggtgataatattagtggtcttttgagaagcaagagcttttagt 163
            |||||||||||||| ||||| |||| |||||| | |||||||  | |||||||| | | |
Sbjct: 3809 tttcgagttgtaacgttggtaataacattagtagccttttgaccaacaagagctctcaat 3750

                                                                        
Query: 164  ttgttccctgtagctagcagaagtaagcttcgcatatgttgcttctgctcttttggacta 223
            |||||||||| ||| |||| |||||||||||||||| || |||| || ||||||||||| 
Sbjct: 3749 ttgttccctgaagcaagcaaaagtaagcttcgcataagtagcttttgatcttttggactt 3690

                                                                        
Query: 224  gcagttttgctcaaagaatcatcaaaagccagcaaatcttcctgcttcatgtctgagagg 283
            ||||||||||||||||| |||||||| || |||||||||||||||||||||| || ||||
Sbjct: 3689 gcagttttgctcaaagactcatcaaaggctagcaaatcttcctgcttcatgtgtgggagg 3630

                                                                        
Query: 284  gatagaagaacctgtttaggtgcaggatctttgtctgatagataaagatatatttctcga 343
            || |||||||||||| ||||||| |||||| | ||||| ||||| | |||||||||||||
Sbjct: 3629 gacagaagaacctgtctaggtgcgggatctctatctgagagatagatatatatttctcga 3570

                                                                        
Query: 344  caaagtccaataagctctgcactcacaacggcattcaattcaacagataagccctgtatt 403
            |||||||||| ||| |||| ||||  || || |||||| |||||||||||||| |||| |
Sbjct: 3569 caaagtccaacaagttctgaactcgtaatggaattcaactcaacagataagccatgtaat 3510

                                                                        
Query: 404  atagaagaaaatagatcctttccaacaaactgcctcagctcagcccggtttgttgcaaca 463
            || |||||||||||||| ||  |||||||||| |||| ||||||||| ||||||||||||
Sbjct: 3509 atggaagaaaatagatctttcgcaacaaactgactcaactcagcccgatttgttgcaaca 3450

                                                                        
Query: 464  gcaaggtgaatcaatgcaccacaaaagggtattactttagtcactgcttcactatctggc 523
            |||||||||||||||||||||||||| || || | ||| || |||||||||||||||| |
Sbjct: 3449 gcaaggtgaatcaatgcaccacaaaaaggaataatttttgtgactgcttcactatctgtc 3390

                                                                        
Query: 524  caactgaacacttcaacagttattctcaaagcaggcagggcagtgccagcattaagcata 583
            ||||||||||||||||||||||| ||||| ||||| |  ||||||    |||||||||||
Sbjct: 3389 caactgaacacttcaacagttatcctcaatgcaggaacagcagtggagacattaagcata 3330

                                                  
Query: 584  agaaatccagtaagagagctggaagcaaatgactccag 621
            ||||||||||| | |||||||||| ||||  |||||||
Sbjct: 3329 agaaatccagtgatagagctggaaacaaacaactccag 3292
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>dbj|AK121146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078D12, full
            insert sequence
          Length = 3881

 Score =  474 bits (239), Expect = e-130
 Identities = 467/543 (86%)
 Strand = Plus / Minus

                                                                        
Query: 79   tccatggtgtgctacagtgccccgatttcgagttgtaacattggtgataatattagtggt 138
            ||||||| ||||  ||| || ||| |||||||||||||| ||||| |||| |||||| | 
Sbjct: 3510 tccatggcgtgcagcagagctccggtttcgagttgtaacgttggtaataacattagtagc 3451

                                                                        
Query: 139  cttttgagaagcaagagcttttagtttgttccctgtagctagcagaagtaagcttcgcat 198
            |||||||  | |||||||| | | ||||||||||| ||| |||| |||||||||||||||
Sbjct: 3450 cttttgaccaacaagagctctcaatttgttccctgaagcaagcaaaagtaagcttcgcat 3391

                                                                        
Query: 199  atgttgcttctgctcttttggactagcagttttgctcaaagaatcatcaaaagccagcaa 258
            | || |||| || ||||||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 3390 aagtagcttttgatcttttggacttgcagttttgctcaaagactcatcaaaggctagcaa 3331

                                                                        
Query: 259  atcttcctgcttcatgtctgagagggatagaagaacctgtttaggtgcaggatctttgtc 318
            ||||||||||||||||| || |||||| |||||||||||| ||||||| |||||| | ||
Sbjct: 3330 atcttcctgcttcatgtgtgggagggacagaagaacctgtctaggtgcgggatctctatc 3271

                                                                        
Query: 319  tgatagataaagatatatttctcgacaaagtccaataagctctgcactcacaacggcatt 378
            ||| ||||| | ||||||||||||||||||||||| ||| |||| ||||  || || |||
Sbjct: 3270 tgagagatagatatatatttctcgacaaagtccaacaagttctgaactcgtaatggaatt 3211

                                                                        
Query: 379  caattcaacagataagccctgtattatagaagaaaatagatcctttccaacaaactgcct 438
            ||| |||||||||||||| |||| ||| |||||||||||||| ||  |||||||||| ||
Sbjct: 3210 caactcaacagataagccatgtaatatggaagaaaatagatctttcgcaacaaactgact 3151

                                                                        
Query: 439  cagctcagcccggtttgttgcaacagcaaggtgaatcaatgcaccacaaaagggtattac 498
            || ||||||||| |||||||||||||||||||||||||||||||||||||| || || | 
Sbjct: 3150 caactcagcccgatttgttgcaacagcaaggtgaatcaatgcaccacaaaaaggaataat 3091

                                                                        
Query: 499  tttagtcactgcttcactatctggccaactgaacacttcaacagttattctcaaagcagg 558
            ||| || |||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 3090 ttttgtgactgcttcactatctgtccaactgaacacttcaacagttatcctcaatgcagg 3031

                                                                        
Query: 559  cagggcagtgccagcattaagcataagaaatccagtaagagagctggaagcaaatgactc 618
             |  ||||||    |||||||||||||||||||||| | |||||||||| ||||  ||||
Sbjct: 3030 aacagcagtggagacattaagcataagaaatccagtgatagagctggaaacaaacaactc 2971

               
Query: 619  cag 621
            |||
Sbjct: 2970 cag 2968
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>gb|AY108156.1| Zea mays PCO111811 mRNA sequence
          Length = 847

 Score =  315 bits (159), Expect = 1e-82
 Identities = 327/382 (85%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 110 gttgtaacattggtgataatattagtggtcttttgagaagc-aagagcttttagtttgtt 168
           |||||||||||||| || | |||||| ||||| |||| ||| ||| ||| ||||||||||
Sbjct: 382 gttgtaacattggtaatcacattagttgtcttctgagcagccaagggctcttagtttgtt 323

                                                                       
Query: 169 ccctgtagctagcagaagtaagcttcgcatatgttgcttctgctcttttggactagcagt 228
           ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 322 ccctgtagccagcagaagtaagcttcgcatatgttgcttttgctctttaggactagcagt 263

                                                                       
Query: 229 tttgctcaaagaatcatcaaaagccagcaaatcttcctgcttcatgtctgagagggatag 288
           ||| |||||||| |||| ||| || || |||||||||||||| |||| || |||||| ||
Sbjct: 262 tttactcaaagagtcattaaatgctagtaaatcttcctgcttaatgtgtgggagggaaag 203

                                                                       
Query: 289 aagaacctgtttaggtgcaggatctttgtctgatagataaagatatatttctcgacaaag 348
           |||||||||  |||||||||||||| | || || ||||| | |||||| || ||||||||
Sbjct: 202 aagaacctgcctaggtgcaggatctctatcagacagatagacatatatctcccgacaaag 143

                                                                       
Query: 349 tccaataagctctgcactcacaacggcattcaattcaacagataagccctgtattataga 408
           ||||| ||| || ||||| |  || | |||  ||||||||||||| || |||||||||||
Sbjct: 142 tccaacaagttcagcactaatgactgaatttgattcaacagataaaccgtgtattataga 83

                                                                       
Query: 409 agaaaatagatcctttccaacaaactgcctcagctcagcccggtttgttgcaacagcaag 468
            ||||| | ||||||| ||||||||||||||| ||||||| ||||||  |||||  ||||
Sbjct: 82  ggaaaacaaatcctttgcaacaaactgcctcaactcagcctggtttgaagcaacgncaag 23

                                 
Query: 469 gtgaatcaatgcaccacaaaag 490
           ||| ||||||||||||||||||
Sbjct: 22  gtggatcaatgcaccacaaaag 1
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  274 bits (138), Expect = 3e-70
 Identities = 258/298 (86%)
 Strand = Plus / Minus

                                                                            
Query: 293      acctgtttaggtgcaggatctttgtctgatagataaagatatatttctcgacaaagtcca 352
                |||||| ||||||| |||||| | ||||| ||||| | ||||||||||||||||||||||
Sbjct: 14803718 acctgtctaggtgcgggatctctatctgagagatagatatatatttctcgacaaagtcca 14803659

                                                                            
Query: 353      ataagctctgcactcacaacggcattcaattcaacagataagccctgtattatagaagaa 412
                | ||| |||| ||||  || || |||||| |||||||||||||| |||| ||| ||||||
Sbjct: 14803658 acaagttctgaactcgtaatggaattcaactcaacagataagccatgtaatatggaagaa 14803599

                                                                            
Query: 413      aatagatcctttccaacaaactgcctcagctcagcccggtttgttgcaacagcaaggtga 472
                |||||||| ||  |||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct: 14803598 aatagatctttcgcaacaaactgactcaactcagcccgatttgttgcaacagcaaggtga 14803539

                                                                            
Query: 473      atcaatgcaccacaaaagggtattactttagtcactgcttcactatctggccaactgaac 532
                ||||||||||||||||| || || | ||| || |||||||||||||||| ||||||||||
Sbjct: 14803538 atcaatgcaccacaaaaaggaataatttttgtgactgcttcactatctgtccaactgaac 14803479

                                                                          
Query: 533      acttcaacagttattctcaaagcaggcagggcagtgccagcattaagcataagaaatc 590
                |||||||||||||| ||||| ||||| |  ||||||    ||||||||||||||||||
Sbjct: 14803478 acttcaacagttatcctcaatgcaggaacagcagtggagacattaagcataagaaatc 14803421



 Score =  170 bits (86), Expect = 3e-39
 Identities = 161/186 (86%)
 Strand = Plus / Minus

                                                                            
Query: 111      ttgtaacattggtgataatattagtggtcttttgagaagcaagagcttttagtttgttcc 170
                ||||||| ||||| |||| |||||| | |||||||  | |||||||| | | ||||||||
Sbjct: 14804172 ttgtaacgttggtaataacattagtagccttttgaccaacaagagctctcaatttgttcc 14804113

                                                                            
Query: 171      ctgtagctagcagaagtaagcttcgcatatgttgcttctgctcttttggactagcagttt 230
                ||| ||| |||| |||||||||||||||| || |||| || ||||||||||| |||||||
Sbjct: 14804112 ctgaagcaagcaaaagtaagcttcgcataagtagcttttgatcttttggacttgcagttt 14804053

                                                                            
Query: 231      tgctcaaagaatcatcaaaagccagcaaatcttcctgcttcatgtctgagagggatagaa 290
                |||||||||| |||||||| || |||||||||||||||||||||| || |||||| ||||
Sbjct: 14804052 tgctcaaagactcatcaaaggctagcaaatcttcctgcttcatgtgtgggagggacagaa 14803993

                      
Query: 291      gaacct 296
                ||||||
Sbjct: 14803992 gaacct 14803987
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>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503E05
          Length = 168258

 Score =  274 bits (138), Expect = 3e-70
 Identities = 258/298 (86%)
 Strand = Plus / Minus

                                                                         
Query: 293   acctgtttaggtgcaggatctttgtctgatagataaagatatatttctcgacaaagtcca 352
             |||||| ||||||| |||||| | ||||| ||||| | ||||||||||||||||||||||
Sbjct: 39762 acctgtctaggtgcgggatctctatctgagagatagatatatatttctcgacaaagtcca 39703

                                                                         
Query: 353   ataagctctgcactcacaacggcattcaattcaacagataagccctgtattatagaagaa 412
             | ||| |||| ||||  || || |||||| |||||||||||||| |||| ||| ||||||
Sbjct: 39702 acaagttctgaactcgtaatggaattcaactcaacagataagccatgtaatatggaagaa 39643

                                                                         
Query: 413   aatagatcctttccaacaaactgcctcagctcagcccggtttgttgcaacagcaaggtga 472
             |||||||| ||  |||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct: 39642 aatagatctttcgcaacaaactgactcaactcagcccgatttgttgcaacagcaaggtga 39583

                                                                         
Query: 473   atcaatgcaccacaaaagggtattactttagtcactgcttcactatctggccaactgaac 532
             ||||||||||||||||| || || | ||| || |||||||||||||||| ||||||||||
Sbjct: 39582 atcaatgcaccacaaaaaggaataatttttgtgactgcttcactatctgtccaactgaac 39523

                                                                       
Query: 533   acttcaacagttattctcaaagcaggcagggcagtgccagcattaagcataagaaatc 590
             |||||||||||||| ||||| ||||| |  ||||||    ||||||||||||||||||
Sbjct: 39522 acttcaacagttatcctcaatgcaggaacagcagtggagacattaagcataagaaatc 39465



 Score =  170 bits (86), Expect = 3e-39
 Identities = 161/186 (86%)
 Strand = Plus / Minus

                                                                         
Query: 111   ttgtaacattggtgataatattagtggtcttttgagaagcaagagcttttagtttgttcc 170
             ||||||| ||||| |||| |||||| | |||||||  | |||||||| | | ||||||||
Sbjct: 40216 ttgtaacgttggtaataacattagtagccttttgaccaacaagagctctcaatttgttcc 40157

                                                                         
Query: 171   ctgtagctagcagaagtaagcttcgcatatgttgcttctgctcttttggactagcagttt 230
             ||| ||| |||| |||||||||||||||| || |||| || ||||||||||| |||||||
Sbjct: 40156 ctgaagcaagcaaaagtaagcttcgcataagtagcttttgatcttttggacttgcagttt 40097

                                                                         
Query: 231   tgctcaaagaatcatcaaaagccagcaaatcttcctgcttcatgtctgagagggatagaa 290
             |||||||||| |||||||| || |||||||||||||||||||||| || |||||| ||||
Sbjct: 40096 tgctcaaagactcatcaaaggctagcaaatcttcctgcttcatgtgtgggagggacagaa 40037

                   
Query: 291   gaacct 296
             ||||||
Sbjct: 40036 gaacct 40031
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>gb|AC104036.8| Homo sapiens chromosome 8, clone RP11-665N23, complete sequence
          Length = 183763

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 249   aagccagcaaatcttcctgcttcat 273
             |||||||||||||||||||||||||
Sbjct: 30561 aagccagcaaatcttcctgcttcat 30585
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>gb|AC015476.10| Homo sapiens, clone RP11-16G11, complete sequence
          Length = 154768

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 249   aagccagcaaatcttcctgcttcat 273
             |||||||||||||||||||||||||
Sbjct: 45814 aagccagcaaatcttcctgcttcat 45790
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>gb|AC092656.1| Homo sapiens BAC clone RP11-455G16 from 4, complete sequence
          Length = 191840

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 58    atcatcatcttcagcattggat 79
             ||||||||||||||||||||||
Sbjct: 45397 atcatcatcttcagcattggat 45418
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>gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, complete sequence
          Length = 188506

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 397   ctgtattatagaagaaaataga 418
             ||||||||||||||||||||||
Sbjct: 99185 ctgtattatagaagaaaataga 99206
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>ref|NM_115016.1| Arabidopsis thaliana ATP binding / transmembrane receptor AT3G51570
            mRNA, complete cds
          Length = 3681

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ataaagatatatttctcgaca 345
            |||||||||||||||||||||
Sbjct: 1364 ataaagatatatttctcgaca 1384
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 253     cagcaaatcttcctgcttcat 273
               |||||||||||||||||||||
Sbjct: 4941731 cagcaaatcttcctgcttcat 4941711
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>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7
          Length = 345997

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     catcatcttcagcattggatc 80
              |||||||||||||||||||||
Sbjct: 301811 catcatcttcagcattggatc 301791
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>emb|AL133452.1|ATF26O13 Arabidopsis thaliana DNA chromosome 3, BAC clone F26O13
          Length = 94349

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 325   ataaagatatatttctcgaca 345
             |||||||||||||||||||||
Sbjct: 73559 ataaagatatatttctcgaca 73579
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>emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, BAC clone T18N14
          Length = 79867

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ataaagatatatttctcgaca 345
            |||||||||||||||||||||
Sbjct: 9038 ataaagatatatttctcgaca 9058
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 456     ttgcaacagcaaggtgaatca 476
               |||||||||||||||||||||
Sbjct: 2591749 ttgcaacagcaaggtgaatca 2591729
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 57      gatcatcatcttcagcattgg 77
               |||||||||||||||||||||
Sbjct: 9140024 gatcatcatcttcagcattgg 9140044
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>gb|AC159038.1| Pan troglodytes BAC clone CH251-156A12 from chromosome unknown, complete
              sequence
          Length = 183175

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 572    gcattaagcataagaaatcca 592
              |||||||||||||||||||||
Sbjct: 154505 gcattaagcataagaaatcca 154485
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>gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complete sequence
          Length = 197911

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 572   gcattaagcataagaaatcca 592
             |||||||||||||||||||||
Sbjct: 95245 gcattaagcataagaaatcca 95265
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>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0662B01
          Length = 155913

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    gatcatcatcttcagcattgg 77
             |||||||||||||||||||||
Sbjct: 34046 gatcatcatcttcagcattgg 34066
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 562    ggcagtgccagcattaagca 581
              ||||||||||||||||||||
Sbjct: 971732 ggcagtgccagcattaagca 971713
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>gb|AC087326.10| Trypanosoma brucei chromosome 4 clone RPCI93-30O21, complete sequence
          Length = 79069

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   ggcagtgccagcattaagca 581
             ||||||||||||||||||||
Sbjct: 46327 ggcagtgccagcattaagca 46346
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>gb|AC091452.2| Mus musculus chromosome X clone RP23-124C16, complete sequence
          Length = 137750

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tgtattatagaagaaaatag 417
             ||||||||||||||||||||
Sbjct: 74623 tgtattatagaagaaaatag 74642
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>gb|AC144932.6| Mus musculus BAC clone RP24-462H2 from chromosome 6, complete sequence
          Length = 140840

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    gtattatagaagaaaataga 418
              ||||||||||||||||||||
Sbjct: 135446 gtattatagaagaaaataga 135465
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>gb|AC123798.5| Mus musculus BAC clone RP24-334O8 from chromosome 3, complete sequence
          Length = 168467

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    tgatagataaagatatattt 338
              ||||||||||||||||||||
Sbjct: 166547 tgatagataaagatatattt 166566
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>gb|AC073270.6| Homo sapiens BAC clone RP11-468B6 from 7, complete sequence
          Length = 188679

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aggtcttcctatgatagtcc 43
             ||||||||||||||||||||
Sbjct: 76110 aggtcttcctatgatagtcc 76129
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>ref|XM_733992.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301608.00.0)
           partial mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 taacattggtgataatatta 133
           ||||||||||||||||||||
Sbjct: 871 taacattggtgataatatta 852
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>gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosome 6, complete sequence
          Length = 177662

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    gtattatagaagaaaataga 418
              ||||||||||||||||||||
Sbjct: 143063 gtattatagaagaaaataga 143044
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>emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chromosome 10 Contains the
             NET1 gene for neuroepithelial cell transforming gene 1,
             the gene for calmodulin-like skin protein (CLSP), the
             CALML3 gene for calmodulin-like 3 (CLP) and four CpG
             islands, complete sequence
          Length = 183441

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   aaagcaggcagggcagtgcc 570
             ||||||||||||||||||||
Sbjct: 42604 aaagcaggcagggcagtgcc 42623
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>gb|AC119163.23| Mus musculus chromosome 3, clone RP24-527P22, complete sequence
          Length = 202675

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 319    tgatagataaagatatattt 338
              ||||||||||||||||||||
Sbjct: 175275 tgatagataaagatatattt 175256
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>emb|AL353681.8| Human DNA sequence from clone RP1-158P9 on chromosome 1 Contains a novel
              gene and a pseudogene, complete sequence
          Length = 113539

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    cttctgctcttttggactag 224
              ||||||||||||||||||||
Sbjct: 105532 cttctgctcttttggactag 105513
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>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12
             Contains part of a novel ring finger gene, a novel zinc
             finger pseudogene, a novel zinc finger gene and a novel
             gene similar to valop (vertebrate ancient long opsin),
             complete sequence
          Length = 165151

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   ccaactgaacacttcaacag 542
             ||||||||||||||||||||
Sbjct: 34164 ccaactgaacacttcaacag 34145
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>emb|CR931811.1| Medicago truncatula chromosome 5 clone mte1-56a16, COMPLETE SEQUENCE
          Length = 88536

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   attatagaagaaaatagatc 420
             ||||||||||||||||||||
Sbjct: 27532 attatagaagaaaatagatc 27551
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>gb|AC093435.3| Drosophila melanogaster 3L BAC RP98-7A5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 171689

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    cgcatatgttgcttctgctc 213
              ||||||||||||||||||||
Sbjct: 111648 cgcatatgttgcttctgctc 111629
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>gb|AC092185.3| Homo sapiens 3q BAC RP11-148O7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165962

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    ttttgagaagcaagagcttt 159
              ||||||||||||||||||||
Sbjct: 138555 ttttgagaagcaagagcttt 138574
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>gb|AC096675.2| Homo sapiens chromosome 1 clone RP11-80N9, complete sequence
          Length = 170467

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    tttgagaagcaagagctttt 160
              ||||||||||||||||||||
Sbjct: 167723 tttgagaagcaagagctttt 167742
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>gb|AC079403.3| Homo sapiens BAC clone RP11-704A20 from 4, complete sequence
          Length = 180699

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   atagataaagatatatttct 340
             ||||||||||||||||||||
Sbjct: 39935 atagataaagatatatttct 39916
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>gb|AY948959.1| Leptodactylus elenae 16S ribosomal RNA gene, partial sequence;
            tRNA-Leu gene, complete sequence; and NADH dehydrogenase
            subunit 1 (ND1) gene, partial cds; mitochondrial
          Length = 1763

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  ttcatgtctgagagggatag 288
            ||||||||||||||||||||
Sbjct: 1405 ttcatgtctgagagggatag 1386
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>ref|XM_684608.1| PREDICTED: Danio rerio similar to Zinc finger protein 646
            (LOC561201), mRNA
          Length = 6125

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  ccaactgaacacttcaacag 542
            ||||||||||||||||||||
Sbjct: 5670 ccaactgaacacttcaacag 5689
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>gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35 of 83 of the complete
             sequence
          Length = 304975

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   cgcatatgttgcttctgctc 213
             ||||||||||||||||||||
Sbjct: 93499 cgcatatgttgcttctgctc 93518
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>emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chromosome X, complete
              sequence
          Length = 174006

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    tgtattatagaagaaaatag 417
              ||||||||||||||||||||
Sbjct: 126825 tgtattatagaagaaaatag 126844
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>gb|AC146336.1| Gallus gallus BAC clone CH261-15P9 from chromosome unknown, complete
            sequence
          Length = 176371

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  gataatattagtggtctttt 143
            ||||||||||||||||||||
Sbjct: 2698 gataatattagtggtctttt 2717
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>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14,
             complete sequence
          Length = 122704

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   ccaactgaacacttcaacag 542
             ||||||||||||||||||||
Sbjct: 63727 ccaactgaacacttcaacag 63708
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>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete
              sequence
          Length = 173254

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 401    attatagaagaaaatagatc 420
              ||||||||||||||||||||
Sbjct: 124024 attatagaagaaaatagatc 124005


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,234,045
Number of Sequences: 3902068
Number of extensions: 6234045
Number of successful extensions: 133602
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133389
Number of HSP's gapped (non-prelim): 206
length of query: 621
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 598
effective length of database: 17,143,297,704
effective search space: 10251692026992
effective search space used: 10251692026992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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