ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LIN3_CAEEL (Q03345) Protein lin-3 precursor (Abnormal cell linea... 33 0.91
2AMP_IMPBA (O24006) Antimicrobial peptides precursor (IB-AMP) [Co... 32 2.6
3YR75_CAEEL (Q09394) Hypothetical protein F43C1.5 30 5.9
4DML2_ARATH (Q9SR66) DEMETER-like protein 2 30 5.9
5COR2A_MOUSE (Q8C0P5) Coronin-2A 30 7.7
6SPP41_YEAST (P38904) Protein SPP41 30 7.7
7COR2A_HUMAN (Q92828) Coronin-2A (WD repeat-containing protein 2)... 30 7.7

>LIN3_CAEEL (Q03345) Protein lin-3 precursor (Abnormal cell lineage protein 3)|
           (Lethal protein 94)
          Length = 438

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 662 EDQMVEHKEEESCSGKDDVAQKSKN---PHAKKENSKTKECSCGSARKHKASC 513
           ED+ V+ + EE+    +D  Q + +   P  +KE  K KE  C     H A+C
Sbjct: 112 EDEKVDEEVEEALKYNEDATQDATSTLKPAVRKEIEKLKEAKCKDYCHHNATC 164



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>AMP_IMPBA (O24006) Antimicrobial peptides precursor (IB-AMP) [Contains: Basic|
           peptide AMP3 (IB-AMP3); Basic peptide AMP1-1
           (IB-AMP1-1); Basic peptide AMP1-2 (IB-AMP1-2); Basic
           peptide AMP1-3 (IB-AMP1-3); Basic peptide AMP2
           (IB-AMP2); Basic peptide AMP4 (
          Length = 333

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 641 KEEESCSGKDDVAQKSKNPHAKKENSKTKECSCGSARKH-KASCSLATAAPSREP 480
           KEEE     D+V+ KS  P   ++  + + C+ G  RK+ K  C+ A  A +  P
Sbjct: 31  KEEEPAKKPDEVSVKSGGPEVSEDQYRHRCCAWGPGRKYCKRWCANAEEAAAAIP 85



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>YR75_CAEEL (Q09394) Hypothetical protein F43C1.5|
          Length = 221

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 692 MSLSLAHPQNEDQMVEHKEEESCSGKDDVAQKSKNPHAKKENSKTKECSCGSARK 528
           ++L L H +    + E K+++SCS    + +  ++     +NSK  + S   A+K
Sbjct: 116 LALLLEHREVNTLISEEKKKKSCSDSSSIQESRRHVKIPGKNSKNSKISVNKAKK 170



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>DML2_ARATH (Q9SR66) DEMETER-like protein 2|
          Length = 1309

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -1

Query: 677 AHPQNEDQMVEHKEEESCSGKDDVAQKSKNPHAKKENSKTKECSCGSARKHKASCSLATA 498
           +H Q+ +  ++ ++++  +  +DV +  K P   K   K+KE +  + +K     SL   
Sbjct: 738 SHQQDPESTIQTQDQQESTRTEDVKKNRKKPTTSKPKKKSKESAKSTQKKSVDWDSLRKE 797

Query: 497 APS 489
           A S
Sbjct: 798 AES 800



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>COR2A_MOUSE (Q8C0P5) Coronin-2A|
          Length = 524

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 77  VSPMEISVVCECRPFADIIVAPIHPTARISDHRSKLSVSNG 199
           V+P  I+VV EC      +V P+H T ++  H  K+    G
Sbjct: 43  VNPHFIAVVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRG 83



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>SPP41_YEAST (P38904) Protein SPP41|
          Length = 1435

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 665 NEDQMVEHKEEESCSGKDDVAQKSKNPHAKKENSKTKECSCGSARKHKASCS 510
           NE++  E ++ E  +  D ++ K  +   KK+ SK +E S   + K   S S
Sbjct: 190 NEEEEKEPEKHEHAAPNDKLSSKKSSKKKKKDKSKNRESSKDKSSKKSKSSS 241



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>COR2A_HUMAN (Q92828) Coronin-2A (WD repeat-containing protein 2) (IR10)|
          Length = 525

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 77  VSPMEISVVCECRPFADIIVAPIHPTARISDHRSKLSVSNG 199
           V+P  I+VV EC      +V P+H T ++  H  K+    G
Sbjct: 43  VNPHFIAVVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRG 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,416,367
Number of Sequences: 219361
Number of extensions: 1918688
Number of successful extensions: 5607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5593
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7592921998
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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