ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTMR1_MOUSE (Q9Z2C4) Myotubularin-related protein 1 (EC 3.1.3.-) 28 2.4
2HYPA_CLOPE (Q46205) Protein hypA 31 3.1
3ZP4_FELCA (P48834) Zona pellucida sperm-binding protein 4 precur... 30 5.2
4SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor 30 6.9
5T2R49_PANTR (Q646C2) Taste receptor type 2 member 49 (T2R49) 30 9.0
6T2R49_PANPA (Q646E3) Taste receptor type 2 member 49 (T2R49) 30 9.0
7T2R49_HUMAN (P59543) Taste receptor type 2 member 49 (T2R49) (T2... 30 9.0

>MTMR1_MOUSE (Q9Z2C4) Myotubularin-related protein 1 (EC 3.1.3.-)|
          Length = 669

 Score = 28.5 bits (62), Expect(2) = 2.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 423 ATGTDMSNHYCWP-VEVVLDKLYNVVVDAVTCKKIKEIVYPLV 298
           A G    N   +P  E++  +++N+ V   + +K+KEIVYP +
Sbjct: 357 AKGGGYENESAYPNAELIFLEIHNIHVMRESLRKLKEIVYPSI 399



 Score = 21.6 bits (44), Expect(2) = 2.4
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 221 IIISIA*YWSVMSQISIGSRGALVFFYFLL-GCTSCVPFTWFSFHHRF 81
           ++I  +  W   SQ++  +   L  +Y  + G  + +   W SF HRF
Sbjct: 438 VVIHCSDGWDRTSQLTSLAMLMLDSYYRTIKGFEALIEKEWISFGHRF 485



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>HYPA_CLOPE (Q46205) Protein hypA|
          Length = 973

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = -3

Query: 648 DMPNSLFQGMVEIGRMFY-PEKPPPFLVSQHASHTLQQRMIINDTYALDYIYRKY----K 484
           ++PN  ++  VE  + +Y P     FL       T ++   IN+ Y  ++ Y++     K
Sbjct: 203 EIPNLTYEEFVEFHKKYYHPSNSYIFLYGN--GDTEKELEFINEEYLKNFEYKEIDSEIK 260

Query: 483 EEKSFESM 460
           E+KSFESM
Sbjct: 261 EQKSFESM 268



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>ZP4_FELCA (P48834) Zona pellucida sperm-binding protein 4 precursor (Zona|
           pellucida sperm-binding protein B)
          Length = 570

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 585 PPPFLVSQHASHTLQQRMIINDTYALDYIYRKYKEEKSFESMVQVNISCK-APPPATGTD 409
           PPP L +QH   TL+ ++  +  Y   Y    Y   K     + V +S +    P+ G  
Sbjct: 339 PPPHLKTQHGPLTLELKIAKDKHYGSYYTIGDYPVVKLLRDPIYVEVSIRHRTDPSLG-- 396

Query: 408 MSNHYCW 388
           +  H CW
Sbjct: 397 LLLHNCW 403



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>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 399 GCSCQCPSLEAVPCRRCLPAPSIRNSSPLCTSC 497
           GC C CP+    PC+  +P  +   ++   T+C
Sbjct: 23  GCDCGCPTTSPKPCQTTVPTCAPTTTTTTTTTC 55



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>T2R49_PANTR (Q646C2) Taste receptor type 2 member 49 (T2R49)|
          Length = 309

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 263 WVLLVNNL*ARHLYIIISIA*YWSVMSQISIGSRGALVFFYFLLGCTSCVPFTWFSFHH 87
           W   V N  + +L +II I+  W+V +  SI    +L  FY L      V F+   FHH
Sbjct: 66  WYSTVLNPTSSNLKVIIFISNAWAVTNHFSIWLATSLSIFYLL----KIVNFSRLIFHH 120



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>T2R49_PANPA (Q646E3) Taste receptor type 2 member 49 (T2R49)|
          Length = 309

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 263 WVLLVNNL*ARHLYIIISIA*YWSVMSQISIGSRGALVFFYFLLGCTSCVPFTWFSFHH 87
           W   V N  + +L +II I+  W+V +  SI    +L  FY L      V F+   FHH
Sbjct: 66  WYSTVLNPTSSNLKVIIFISNAWAVTNHFSIWLATSLSIFYLL----KIVNFSRLIFHH 120



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>T2R49_HUMAN (P59543) Taste receptor type 2 member 49 (T2R49) (T2R56)|
          Length = 309

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 263 WVLLVNNL*ARHLYIIISIA*YWSVMSQISIGSRGALVFFYFLLGCTSCVPFTWFSFHH 87
           W   V N  + +L +II I+  W+V +  SI    +L  FY L      V F+   FHH
Sbjct: 66  WYSTVLNPTSSNLKVIIFISNAWAVTNHFSIWLATSLSIFYLL----KIVNFSRLIFHH 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,487,771
Number of Sequences: 219361
Number of extensions: 1737926
Number of successful extensions: 5011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4999
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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