ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20g06 |
|---|---|
| Clone Library Name | barley_pub |
>TERF1_MOUSE (P70371) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding| factor 1) Length = 421 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = -1 Query: 602 ICRTDAKTKTKRSLKRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYSYRTSVD 423 +C ++ + T R+ + W E L GV ++G G W++I LS ++ RTSV Sbjct: 349 LCVSENQPDTDDKSGRRKRQTWLWEEDRILKCGVKKYGEGNWAKI--LSHYKFNNRTSVM 406 Query: 422 LKDKWRNLIR 393 LKD+WR + R Sbjct: 407 LKDRWRTMKR 416
>TERF1_CRIGR (O55036) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding| factor 1) (Fragment) Length = 438 Score = 43.5 bits (101), Expect = 6e-04 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = -1 Query: 632 KETHSIEADDICRTDAKTKTKRSLKRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRLSF 453 KE+ I + ++ T + + +AW E L GV ++G G WS+I L Sbjct: 352 KESRRATESRIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLH 409 Query: 452 ASYSYRTSVDLKDKWRNL 399 ++ RTSV LKD+WR + Sbjct: 410 YKFNNRTSVMLKDRWRTM 427
>TERF1_HUMAN (P54274) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding| factor 1) (NIMA-interacting protein 2) (Telomeric protein Pin2/TRF1) Length = 439 Score = 43.5 bits (101), Expect = 6e-04 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = -1 Query: 632 KETHSIEADDICRTDAKTKTKRSLKRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRLSF 453 KE+ I + ++ T + + +AW E L GV ++G G WS+I L Sbjct: 352 KESRRATESRIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLH 409 Query: 452 ASYSYRTSVDLKDKWRNL 399 ++ RTSV LKD+WR + Sbjct: 410 YKFNNRTSVMLKDRWRTM 427
>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 495 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Frame = -1 Query: 617 IEADDICRTDAKTKTKRS-LKRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYS 441 +E D + A + + S L RK + WT+ E + DGV ++G G W+ I + SY Sbjct: 420 LEEDQLFEVQAPGEDRSSSLTRK--QKWTIEESEWVKDGVRKYGEGNWAAISK----SYP 473 Query: 440 Y--RTSVDLKDKWRNL 399 + RT+V +KD+WR + Sbjct: 474 FVNRTAVMIKDRWRTM 489
>TERF2_HUMAN (Q15554) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 500 Score = 39.7 bits (91), Expect = 0.009 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = -1 Query: 638 DNKETHSIEADDICRTDAKTKTKRSLKRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRL 459 + KET +E D++ + A + + WT+ E + GV ++G G W+ I + Sbjct: 418 EEKETW-VEEDELFQVQAAPDEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISK- 475 Query: 458 SFASYSY--RTSVDLKDKWRNLIR 393 +Y + RT+V +KD+WR + R Sbjct: 476 ---NYPFVNRTAVMIKDRWRTMKR 496
>TERF2_CHICK (Q9PU53) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 718 Score = 37.0 bits (84), Expect = 0.058 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -1 Query: 539 WTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYSYRTSVDLKDKWRNL 399 WT+ E + DGV ++G G+W I + RTSV +KD++R + Sbjct: 668 WTVQESEWIKDGVRKYGEGRWKTISEK--YPFQNRTSVQIKDRYRTM 712
>TJAP1_HUMAN (Q5JTD0) Tight junction-associated protein 1 (Tight junction| protein 4) (Protein incorporated later into tight junctions) Length = 557 Score = 36.6 bits (83), Expect = 0.075 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +2 Query: 476 TTCQARTEPHHRPASEPRTMSTPDDASASNSALFSSWHQ 592 T A+ PHH+P+ P T+S P +++S L SW + Sbjct: 378 TPASAQASPHHQPSPAPLTLSAPASSASSEEDLLVSWQR 416
>TJAP1_MOUSE (Q9DCD5) Tight junction-associated protein 1 (Tight junction| protein 4) (Protein incorporated later into tight junctions) Length = 539 Score = 33.9 bits (76), Expect = 0.49 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +2 Query: 488 ARTEPHHRPASEPRTMSTPDDASASNSALFSSWHQ 592 A+ PHH+P+ P +S P +++S L +SW + Sbjct: 367 AQGSPHHQPSPAPSALSAPASSASSEEDLLASWQR 401
>TBF1_YEAST (Q02457) Protein TBF1 (TTAGGG repeat-binding factor 1) (TBF alpha)| Length = 562 Score = 33.5 bits (75), Expect = 0.64 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = -1 Query: 560 KRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRL------SFASYSYRTSVDLKDKWRN 402 K K R W+ E LV+G+ + GP WS+I L + RT V LKDK RN Sbjct: 405 KPKAKRTWSKEEEEALVEGLKEVGP-SWSKILDLYGPGGKITENLKNRTQVQLKDKARN 462
>COX3_SYNY3 (Q06475) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) (Cytochrome aa3 subunit 3) (Oxidase aa(3) subunit 3) Length = 233 Score = 32.0 bits (71), Expect = 1.9 Identities = 20/53 (37%), Positives = 27/53 (50%) Frame = +1 Query: 88 ATIRVFVVHKHTTTPISSGCFFSSTCLVAHGHHRNPDEPLPCATLLLCPENLI 246 ATI+ +V TT +SS + T AHGHH +PD + L L E+ I Sbjct: 20 ATIQRLIVSPMQTTALSSDLNSTYTPGEAHGHHGHPDLRMFGVVLFLVAESAI 72
>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I| Length = 390 Score = 32.0 bits (71), Expect = 1.9 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = -1 Query: 635 NKETHSIEADDICRTDAKTKTKRSLKRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRLS 456 N +TH I T +K+ R K + +T E +L++G GP W+ I + + Sbjct: 115 NAKTHMGRPQKIPHTVGLSKSTR----KERKQFTPEEDERLLEGFFLHGPC-WTRISKDA 169 Query: 455 FASYSYRTSVDLKDKWRN 402 R S DL+D++RN Sbjct: 170 NLGLQNRRSTDLRDRFRN 187 Score = 32.0 bits (71), Expect = 1.9 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = -1 Query: 557 RKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYSYRTSVDLKDKWRNLIRASQTQ 378 RK WT E L+ G G G W +I ++ R+ DLKD++R ++ + Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTNRSPNDLKDRFRTILPEDYKK 111 Query: 377 LSP 369 P Sbjct: 112 FYP 114
>SRY_CAPHI (Q03256) Sex-determining region Y protein (Testis-determining| factor) Length = 240 Score = 31.6 bits (70), Expect = 2.4 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -1 Query: 632 KETHSIEADDICRTDAKTKTKRSLKRKHHRAWT 534 K THS +CR+ + T L+++HH +WT Sbjct: 174 KTTHSQMESQLCRSQSLILTNSLLQKEHHSSWT 206
>MYB_AVIMB (P01104) Transforming protein Myb| Length = 382 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -1 Query: 539 WTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYSYRTSVDLKDKWRNLI--RASQTQLSPE 366 WT E ++++ V ++GP +WS+I + R +++W N + +T + E Sbjct: 24 WTKEEDQRVIEHVQKYGPKRWSDIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWTEE 79 Query: 365 NDGV 354 D + Sbjct: 80 EDRI 83
>RPOBC_WOLPM (Q73IW9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2837 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/80 (25%), Positives = 36/80 (45%) Frame = -1 Query: 638 DNKETHSIEADDICRTDAKTKTKRSLKRKHHRAWTLSEVLKLVDGVAQFGPGKWSEIRRL 459 DNK+ +I+ D+I + T K +L E+ +LV+ +S +R Sbjct: 1184 DNKKIENIDDDEITASVLNTPNKNALN---------DELNELVENYLNSCKSSYSNLRNF 1234 Query: 458 SFASYSYRTSVDLKDKWRNL 399 YSY ++V + + RN+ Sbjct: 1235 LIEVYSYGSNVSICNDIRNI 1254
>MYBH_DICDI (P34127) Myb-like protein (Fragment)| Length = 451 Score = 30.4 bits (67), Expect = 5.4 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -1 Query: 542 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYSYRTSVDLKDKWRN 402 AWT E K+++ V +GP KWS+I R +++W N Sbjct: 203 AWTKDEDDKVIELVKTYGPKKWSDIA----LHLKGRMGKQCRERWHN 245
>ACSF_SYNPX (Q7U6Y8) Magnesium-protoporphyrin IX monomethyl ester [oxidative]| cyclase (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) Length = 356 Score = 30.4 bits (67), Expect = 5.4 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -3 Query: 603 YLQN*CQDENKAE--FEAEASSGVDIVRGSEAGRWC 502 + +N CQDEN+ F+A S D VRG A WC Sbjct: 201 FFENWCQDENRHGDFFDALMKSQPDTVRGPIAKLWC 236
>BAR1_SCHCO (Q92275) Pheromone B alpha 1 receptor| Length = 639 Score = 30.4 bits (67), Expect = 5.4 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = +2 Query: 407 ATYP*DPLRCDKNMRRRIVF*SQTTCQARTEPHHRPASEPRTMSTPD-DASASNSALFSS 583 A+YP + RRIV T PHH A EP + + PD +S S+SA FS+ Sbjct: 467 ASYPMGVAYSSDSEHRRIV------PHHSTVPHHSTADEPASPALPDTPSSCSSSATFST 520
>STS_RAT (P15589) Steryl-sulfatase precursor (EC 3.1.6.2) (Steroid| sulfatase) (Steryl-sulfate sulfohydrolase) (Arylsulfatase C) (ASC) Length = 577 Score = 30.4 bits (67), Expect = 5.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 76 HNFVATIRVFVVHKHTTTPISSGCFFSSTCLVAHGHHRNPDEP 204 HN + + F + P S+GCF + C+ HGHH +P Sbjct: 457 HNSSSVWKAFYFTPNFDPPGSNGCFSTHVCM-CHGHHVTHHDP 498
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit| 4) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 30.0 bits (66), Expect = 7.1 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = -1 Query: 596 RTDAKTKTKRSLKRKHHRA----WTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYSYRTS 429 R+DA+ + R L+R H W L E +L++ + ++G G W++I + +R+ Sbjct: 434 RSDAQCRD-RYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIA----SELPHRSG 488 Query: 428 VDLKDKWRNLIRASQ 384 KW+ ++ Q Sbjct: 489 SQCLSKWKIMMGKKQ 503
>GPMA_FUSNN (Q8RFG9) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 228 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 89 RQYVCSSSTSIPLHLSLPDVFSHLLALWHMDIT 187 R+Y + + IPL SL D + +L WH DI+ Sbjct: 135 RRYADLADSDIPLGESLKDTIARVLPYWHSDIS 167
>SYA_BORPA (Q7W6N4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 874 Score = 29.6 bits (65), Expect = 9.2 Identities = 16/63 (25%), Positives = 31/63 (49%) Frame = +1 Query: 298 RSRMDGGIGMIEGLLFRGQTPSFSGESCVWLALIRLRHLSLRSTEVR*EYEAKDSLLISD 477 ++R G M EGL + G F G + L+ +++ L + T+V +D++++ D Sbjct: 432 QARAAGKFKMAEGLSYEGAETRFEGYESLELSGVKVTALYVEGTQVEQVSAGQDAVVVLD 491 Query: 478 HLP 486 P Sbjct: 492 ATP 494
>SYA_BORBR (Q7WHL6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 874 Score = 29.6 bits (65), Expect = 9.2 Identities = 16/63 (25%), Positives = 31/63 (49%) Frame = +1 Query: 298 RSRMDGGIGMIEGLLFRGQTPSFSGESCVWLALIRLRHLSLRSTEVR*EYEAKDSLLISD 477 ++R G M EGL + G F G + L+ +++ L + T+V +D++++ D Sbjct: 432 QARAAGKFKMAEGLSYEGAETRFEGYESLELSGVKVTALYVEGTQVEQVSAGQDAVVVLD 491 Query: 478 HLP 486 P Sbjct: 492 ATP 494
>MYB21_ARATH (Q9LK95) Transcription factor MYB21 (Myb-related protein 21)| (AtMYB21) (Myb homolog 3) (AtMyb3) Length = 226 Score = 29.6 bits (65), Expect = 9.2 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -1 Query: 539 WTLSEVLKLVDGVAQFGPGKWSEIRRLSFASYSYRTSVDLKDKWRNLIR 393 WT+ E L L++ +A G G W+ + + ++ RT + +W N +R Sbjct: 25 WTMEEDLILINYIANHGDGVWNSLAK---SAGLKRTGKSCRLRWLNYLR 70 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,816,401 Number of Sequences: 219361 Number of extensions: 2188968 Number of successful extensions: 6317 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 6025 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6306 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
