ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20g05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109942.1| Zea mays CL16458_1 mRNA sequence Length = 1067 Score = 77.8 bits (39), Expect = 5e-12 Identities = 66/76 (86%) Strand = Plus / Minus Query: 27 tgctngctgtagcgcatgatgccatacacatcaacgataccaggagggaacaccgnntcc 86 |||| |||||| |||||||| || || ||||||||||| |||||||| ||||||| ||| Sbjct: 940 tgctcgctgtaacgcatgatcccgtagacatcaacgatgccaggaggaaacaccggatcc 881 Query: 87 gtcgctgctcttacag 102 ||||||||||| |||| Sbjct: 880 gtcgctgctctcacag 865
>ref|XM_466206.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1167 Score = 63.9 bits (32), Expect = 8e-08 Identities = 60/70 (85%) Strand = Plus / Minus Query: 33 ctgtagcgcatgatgccatacacatcaacgataccaggagggaacaccgnntccgtcgct 92 ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| | || || ||| Sbjct: 946 ctgtatcgcatgatgccgtacacatcaacaatacccggaggaaacactggatcagttgct 887 Query: 93 gctcttacag 102 |||||||||| Sbjct: 886 gctcttacag 877
>ref|XM_506825.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_F08.11 mRNA Length = 1238 Score = 63.9 bits (32), Expect = 8e-08 Identities = 60/70 (85%) Strand = Plus / Minus Query: 33 ctgtagcgcatgatgccatacacatcaacgataccaggagggaacaccgnntccgtcgct 92 ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| | || || ||| Sbjct: 958 ctgtatcgcatgatgccgtacacatcaacaatacccggaggaaacactggatcagttgct 899 Query: 93 gctcttacag 102 |||||||||| Sbjct: 898 gctcttacag 889
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 8e-08 Identities = 60/70 (85%) Strand = Plus / Minus Query: 33 ctgtagcgcatgatgccatacacatcaacgataccaggagggaacaccgnntccgtcgct 92 ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| | || || ||| Sbjct: 21057906 ctgtatcgcatgatgccgtacacatcaacaatacccggaggaaacactggatcagttgct 21057847 Query: 93 gctcttacag 102 |||||||||| Sbjct: 21057846 gctcttacag 21057837
>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_F08 Length = 105979 Score = 63.9 bits (32), Expect = 8e-08 Identities = 60/70 (85%) Strand = Plus / Minus Query: 33 ctgtagcgcatgatgccatacacatcaacgataccaggagggaacaccgnntccgtcgct 92 ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| | || || ||| Sbjct: 59651 ctgtatcgcatgatgccgtacacatcaacaatacccggaggaaacactggatcagttgct 59592 Query: 93 gctcttacag 102 |||||||||| Sbjct: 59591 gctcttacag 59582
>dbj|AK103125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119M03, full insert sequence Length = 1238 Score = 63.9 bits (32), Expect = 8e-08 Identities = 60/70 (85%) Strand = Plus / Minus Query: 33 ctgtagcgcatgatgccatacacatcaacgataccaggagggaacaccgnntccgtcgct 92 ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| | || || ||| Sbjct: 958 ctgtatcgcatgatgccgtacacatcaacaatacccggaggaaacactggatcagttgct 899 Query: 93 gctcttacag 102 |||||||||| Sbjct: 898 gctcttacag 889
>dbj|AK059938.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E01, full insert sequence Length = 1167 Score = 63.9 bits (32), Expect = 8e-08 Identities = 60/70 (85%) Strand = Plus / Minus Query: 33 ctgtagcgcatgatgccatacacatcaacgataccaggagggaacaccgnntccgtcgct 92 ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| | || || ||| Sbjct: 946 ctgtatcgcatgatgccgtacacatcaacaatacccggaggaaacactggatcagttgct 887 Query: 93 gctcttacag 102 |||||||||| Sbjct: 886 gctcttacag 877
>gb|AC011303.9| Homo sapiens BAC clone RP11-342D6 from 2, complete sequence Length = 188616 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 atgatgccatacacatcaa 60 ||||||||||||||||||| Sbjct: 179514 atgatgccatacacatcaa 179496
>ref|XM_312811.2| Anopheles gambiae str. PEST ENSANGP00000003199 (ENSANGG00000002586), partial mRNA Length = 2175 Score = 38.2 bits (19), Expect = 4.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 atacacatcaacgatacca 68 ||||||||||||||||||| Sbjct: 64 atacacatcaacgatacca 82 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 324,947 Number of Sequences: 3902068 Number of extensions: 324947 Number of successful extensions: 16631 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16615 Number of HSP's gapped (non-prelim): 16 length of query: 104 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 83 effective length of database: 17,151,101,840 effective search space: 1423541452720 effective search space used: 1423541452720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
