>YJIR_ECOLI (P39389) Hypothetical protein yjiR|
          Length = 470

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
 Frame = +2

Query: 299 LRPGWRQCGKQHDDYMKCNLIITT-----------TWIVHGHYLEHSK*FKIIY*DSKIF 445
           LR GW   G+ HD  M     I++           T+++ GHY  H +  + IY  +   
Sbjct: 319 LRVGWVAPGRYHDKLMHMKYAISSFNVPSTQMAAATFVLEGHYHRHIRRMRQIYQRNLAL 378

Query: 446 NDDYLKLHFP 475
              +++ +FP
Sbjct: 379 YTCWIREYFP 388

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310 (ORF154)|
          Length = 154

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
 Frame = +2

Query: 113 FWWVIANNRLKFKWVKWDQ----------VGSHFLNVYNMYDYYPLFESCLSEATTRIVH 262
           FWW    N+ K  WV W +          +G   L  +N        ++ L++ + RI+H
Sbjct: 28  FWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFN--------QALLAKQSFRIIH 79

Query: 263 GHYHPESVI*S*LRPGWRQCGKQHDDYMKCNLIITTTW----IVHGHYL 397
               P +++   LR  +      H   M+C++    ++    I+HG  L
Sbjct: 80  ---QPHTLLSRLLRSRY----FPHSSMMECSVGTRPSYAWRSIIHGREL 121

>FABH_FUSNN (Q8RGX7) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 162 GIKWVPTF*MYTTCTTIIHFLNHAYLKLQPGSYMGIITLKV*FNHNYDQVGDNAGSNTMI 341
           G+K +P F +   CT  I+ L  AY  ++ G Y  I+ +         ++ D    NT +
Sbjct: 100 GLKKIPCFDLNAACTGFIYGLEVAYSLVKSGLYKNILVIGA---ETLSRIVDMQNRNTCV 156

Query: 342 I 344
           +
Sbjct: 157 L 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,554,327
Number of Sequences: 219361
Number of extensions: 1751134
Number of successful extensions: 3181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3179
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)