ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20f22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo... 54 6e-04
2gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans... 54 6e-04
3gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 54 6e-04
4gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 54 6e-04
5gb|AC118246.15| Mus musculus chromosome 3, clone RP23-302N4, com... 44 0.53
6gb|AC131083.8| Mus musculus chromosome 1, clone RP23-444L13, com... 42 2.1
7gb|AC168220.1| Mus musculus BAC clone RP23-77O10 from chromosome... 42 2.1
8gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence 42 2.1
9gb|AC101786.7| Mus musculus chromosome 1, clone RP24-146K19, com... 42 2.1
10gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, comple... 42 2.1
11emb|AL163151.1|CNS01RIC Human chromosome 14 DNA sequence BAC R-1... 42 2.1
12gb|AC166362.5| Mus musculus BAC clone RP23-299O17 from chromosom... 40 8.3
13ref|XM_589443.2| PREDICTED: Bos taurus similar to Gab3 protein (... 40 8.3
14gb|AC164876.3| Mus musculus BAC clone RP23-408K8 from chromosome... 40 8.3
15gb|AC141430.3| Mus musculus BAC clone RP23-95O14 from chromosome... 40 8.3
16gb|AC138284.9| Mus musculus chromosome 9, clone RP23-356D13, com... 40 8.3
17gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome... 40 8.3
18gb|AC129201.3| Mus musculus BAC clone RP24-224A15 from chromosom... 40 8.3
19gb|AC122047.4| Mus musculus BAC clone RP24-456A9 from chromosome... 40 8.3
20gb|AC005631.4| Homo sapiens PAC clone RP5-1129J21 from 7, comple... 40 8.3
21emb|AL137072.8| Human DNA sequence from clone RP11-29B11 on chro... 40 8.3
22emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C... 40 8.3
23emb|AL035694.8|HS33L1 Human DNA sequence from clone RP1-33L1 on ... 40 8.3
24emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chrom... 40 8.3
25ref|NM_135408.2| Drosophila melanogaster CG9466-RA (CG9466), mRNA 40 8.3
26gb|AC108056.3| Homo sapiens BAC clone RP11-366I1 from 4, complet... 40 8.3
27ref|XM_696139.1| PREDICTED: Danio rerio similar to carboxylester... 40 8.3
28gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 40 8.3
29gb|AY058271.1| Drosophila melanogaster GH02475 full length cDNA 40 8.3
30gb|AC093045.1| Drosophila melanogaster, chromosome 2L, region 29... 40 8.3
31gb|AC155990.2| Xenopus tropicalis clone ISB1-282D1, complete seq... 40 8.3
32emb|BX470087.8| Zebrafish DNA sequence from clone CH211-202A10 i... 40 8.3
33gb|AC152932.2| Xenopus tropicalis clone ISB1-31M3, complete sequ... 40 8.3
34gb|AC138306.4| Mus musculus BAC clone RP24-240E9 from 16, comple... 40 8.3
35gb|AC154781.2| Mus musculus BAC clone RP24-463K5 from 16, comple... 40 8.3
36gb|AE003622.4| Drosophila melanogaster chromosome 2L, section 31... 40 8.3
37gb|AC004725.1|AC004725 Drosophila melanogaster, chromosome 2L, r... 40 8.3
38gb|AC175115.1| Mus musculus BAC clone RP23-395E24 from chromosom... 40 8.3
39gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, co... 40 8.3
40gb|AC138119.5| Mus musculus BAC clone RP23-307D8 from chromosome... 40 8.3
41gb|AC174780.2| Mus musculus BAC clone RP23-92D22 from chromosome... 40 8.3
42gb|AC166054.3| Mus musculus BAC clone RP24-79B1 from chromosome ... 40 8.3
43emb|AL928956.11| Mouse DNA sequence from clone RP23-74G16 on chr... 40 8.3
44gb|AC141559.4| Mus musculus BAC clone RP24-341O14 from 5, comple... 40 8.3
45gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complet... 40 8.3
46gb|AC172105.1| Mus musculus BAC clone RP24-225O2 from chromosome... 40 8.3 
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 2    taaaatgtgattnggacaaatctggacaga 31
            |||||||||||| |||||||||||||||||
Sbjct: 2147 taaaatgtgattaggacaaatctggacaga 2176
to top
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 2    taaaatgtgattnggacaaatctggacaga 31
            |||||||||||| |||||||||||||||||
Sbjct: 2147 taaaatgtgattaggacaaatctggacaga 2176
to top
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
            and complete sequences
          Length = 11820

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 2    taaaatgtgattnggacaaatctggacaga 31
            |||||||||||| |||||||||||||||||
Sbjct: 9727 taaaatgtgattaggacaaatctggacaga 9756



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 2    taaaatgtgattnggacaaatctggacaga 31
            |||||||||||| |||||||||||||||||
Sbjct: 2147 taaaatgtgattaggacaaatctggacaga 2176
to top
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 2      taaaatgtgattnggacaaatctggacaga 31
              |||||||||||| |||||||||||||||||
Sbjct: 325119 taaaatgtgattaggacaaatctggacaga 325148



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 2      taaaatgtgattnggacaaatctggacaga 31
              |||||||||||| |||||||||||||||||
Sbjct: 129580 taaaatgtgattaggacaaatctggacaga 129609



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 2      taaaatgtgattnggacaaatctggacaga 31
              |||||||||||| ||||||||||| |||||
Sbjct: 176913 taaaatgtgattaggacaaatctgaacaga 176942
to top
>gb|AC118246.15| Mus musculus chromosome 3, clone RP23-302N4, complete sequence
          Length = 157517

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 395   cttgaacattcaaaatgattca 416
             ||||||||||||||||||||||
Sbjct: 74329 cttgaacattcaaaatgattca 74308
to top
>gb|AC131083.8| Mus musculus chromosome 1, clone RP23-444L13, complete sequence
          Length = 182591

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 185   ttaaatgtatacaacatgtac 205
             |||||||||||||||||||||
Sbjct: 28730 ttaaatgtatacaacatgtac 28750
to top
>gb|AC168220.1| Mus musculus BAC clone RP23-77O10 from chromosome 16, complete sequence
          Length = 215265

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 551    ttccagcaacatcttgatcac 571
              |||||||||||||||||||||
Sbjct: 126031 ttccagcaacatcttgatcac 126051
to top
>gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence
          Length = 176757

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    ggtcaggctgcaggtgggact 71
             |||||||||||||||||||||
Sbjct: 52796 ggtcaggctgcaggtgggact 52816
to top
>gb|AC101786.7| Mus musculus chromosome 1, clone RP24-146K19, complete sequence
          Length = 116889

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 185   ttaaatgtatacaacatgtac 205
             |||||||||||||||||||||
Sbjct: 88428 ttaaatgtatacaacatgtac 88448
to top
>gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, complete sequence
          Length = 178446

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    ctttttgaatcatgcttatct 238
              |||||||||||||||||||||
Sbjct: 118525 ctttttgaatcatgcttatct 118545
to top
>emb|AL163151.1|CNS01RIC Human chromosome 14 DNA sequence BAC R-138H18 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 150572

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   tttttaaatgtatacaacatg 202
             |||||||||||||||||||||
Sbjct: 69864 tttttaaatgtatacaacatg 69844
to top
>gb|AC166362.5| Mus musculus BAC clone RP23-299O17 from chromosome 5, complete sequence
          Length = 188276

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcccactttttaaatgtata 195
              ||||||||||||||||||||
Sbjct: 146930 tcccactttttaaatgtata 146949
to top
>ref|XM_589443.2| PREDICTED: Bos taurus similar to Gab3 protein (LOC512009), mRNA
          Length = 2055

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   gggtcaggctgcaggtggga 69
            ||||||||||||||||||||
Sbjct: 1899 gggtcaggctgcaggtggga 1918
to top
>gb|AC164876.3| Mus musculus BAC clone RP23-408K8 from chromosome 5, complete sequence
          Length = 204467

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 79695 tcccactttttaaatgtata 79714
to top
>gb|AC141430.3| Mus musculus BAC clone RP23-95O14 from chromosome 5, complete sequence
          Length = 208771

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 35408 tcccactttttaaatgtata 35427
to top
>gb|AC138284.9| Mus musculus chromosome 9, clone RP23-356D13, complete sequence
          Length = 220266

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    gatagcaaaatcttcaatga 450
              ||||||||||||||||||||
Sbjct: 113346 gatagcaaaatcttcaatga 113365
to top
>gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome 9, complete sequence
          Length = 159785

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    tatgaagtgtaatttaatca 362
              ||||||||||||||||||||
Sbjct: 122631 tatgaagtgtaatttaatca 122612
to top
>gb|AC129201.3| Mus musculus BAC clone RP24-224A15 from chromosome 5, complete sequence
          Length = 147253

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    tcccactttttaaatgtata 195
              ||||||||||||||||||||
Sbjct: 122697 tcccactttttaaatgtata 122678



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 29400 tcccactttttaaatgtata 29381
to top
>gb|AC122047.4| Mus musculus BAC clone RP24-456A9 from chromosome 2, complete
            sequence
          Length = 172110

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 416  aagattatctactaggatagcaaa 439
            |||||||||||||||| |||||||
Sbjct: 4808 aagattatctactaggttagcaaa 4785
to top
>gb|AC005631.4| Homo sapiens PAC clone RP5-1129J21 from 7, complete sequence
          Length = 143773

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   ttttaaatgtatacaacatg 202
             ||||||||||||||||||||
Sbjct: 21087 ttttaaatgtatacaacatg 21068
to top
>emb|AL137072.8| Human DNA sequence from clone RP11-29B11 on chromosome 9 Contains the
             5' end of the TXNDC4 gene for thioredoxin domain
             containing 4 (endoplasmic reticulum) (ERP44,
             ERp44,KIAA0573), the 5' end of the INVS gene for inversin,
             a ribosomal protein S2 (RPS2) pseudogene, a novel
             pseudogene and two CpG islands, complete sequence
          Length = 172830

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 390   attatcttgaacattcaaaatgattcaa 417
             |||| |||||||||||||||| ||||||
Sbjct: 78259 attaccttgaacattcaaaatcattcaa 78232
to top
>emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C20 on chromosome 20 Contains the
             C20orf135 gene for chromosome 20 open reading frame 135,
             the TPD52L2 gene for tumor protein D52-like protein 2, the
             DNAJC5 gene for member 5 of DnaJ (Hsp40) homolog subfamily
             C, the URKL1 gene for uridine kinase-like 1, the gene for
             a novel protein (KIAA1196), the C20orf136 gene for
             chromosome 20 open reading frame 136, the 5' end of the
             C20orf14 gene for chromosome 20 open reading frame 14 and
             twelve CpG islands, complete sequence
          Length = 139505

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    ggggtcaggctgcaggtggg 68
             ||||||||||||||||||||
Sbjct: 81446 ggggtcaggctgcaggtggg 81465
to top
>emb|AL035694.8|HS33L1 Human DNA sequence from clone RP1-33L1 on chromosome 6q14.1-15 Contains
             the TBX18 gene for T-box 18 and 2 CpG islands, complete
             sequence
          Length = 100209

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   acacttccctgaaacttcat 485
             ||||||||||||||||||||
Sbjct: 76456 acacttccctgaaacttcat 76437
to top
>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5
          Length = 341050

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    tttttaaatgtatacaacat 201
              ||||||||||||||||||||
Sbjct: 215157 tttttaaatgtatacaacat 215138
to top
>ref|NM_135408.2| Drosophila melanogaster CG9466-RA (CG9466), mRNA
          Length = 3070

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 575 catggtctccgactgttagttccaccttttgg 606
           ||||||||||||||| | |||||||| |||||
Sbjct: 392 catggtctccgactgctcgttccaccatttgg 361
to top
>gb|AC108056.3| Homo sapiens BAC clone RP11-366I1 from 4, complete sequence
          Length = 174916

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   gaagtgtaatttaatcataa 365
             ||||||||||||||||||||
Sbjct: 88363 gaagtgtaatttaatcataa 88382
to top
>ref|XM_696139.1| PREDICTED: Danio rerio similar to carboxylesterase 2 (intestine,
           liver) (LOC572426), mRNA
          Length = 1057

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 568 tcaccaccatggtctccgac 587
           ||||||||||||||||||||
Sbjct: 272 tcaccaccatggtctccgac 291
to top
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   ctattatccactttttgaat 227
             ||||||||||||||||||||
Sbjct: 26299 ctattatccactttttgaat 26318
to top
>gb|AY058271.1| Drosophila melanogaster GH02475 full length cDNA
          Length = 3059

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 575 catggtctccgactgttagttccaccttttgg 606
           ||||||||||||||| | |||||||| |||||
Sbjct: 370 catggtctccgactgctcgttccaccatttgg 339
to top
>gb|AC093045.1| Drosophila melanogaster, chromosome 2L, region 29E-29E, BAC clone
             BACR01O16, complete sequence
          Length = 189904

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 575   catggtctccgactgttagttccaccttttgg 606
             ||||||||||||||| | |||||||| |||||
Sbjct: 16584 catggtctccgactgctcgttccaccatttgg 16615
to top
>gb|AC155990.2| Xenopus tropicalis clone ISB1-282D1, complete sequence
          Length = 95725

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    aatctggacagattacaaag 39
             ||||||||||||||||||||
Sbjct: 33700 aatctggacagattacaaag 33681
to top
>emb|BX470087.8| Zebrafish DNA sequence from clone CH211-202A10 in linkage group 3,
              complete sequence
          Length = 218404

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 224    gaatcatgcttatctgaagctaca 247
              |||||||||||||||| |||||||
Sbjct: 161861 gaatcatgcttatctgtagctaca 161884
to top
>gb|AC152932.2| Xenopus tropicalis clone ISB1-31M3, complete sequence
          Length = 78419

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    aatctggacagattacaaag 39
             ||||||||||||||||||||
Sbjct: 64645 aatctggacagattacaaag 64626
to top
>gb|AC138306.4| Mus musculus BAC clone RP24-240E9 from 16, complete sequence
          Length = 170196

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 139    actaaaatttaagtgggttaagtg 162
              |||||||||| |||||||||||||
Sbjct: 133336 actaaaatttcagtgggttaagtg 133359
to top
>gb|AC154781.2| Mus musculus BAC clone RP24-463K5 from 16, complete sequence
          Length = 173258

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   actaaaatttaagtgggttaagtg 162
             |||||||||| |||||||||||||
Sbjct: 44647 actaaaatttcagtgggttaagtg 44670
to top
>gb|AE003622.4| Drosophila melanogaster chromosome 2L, section 31 of 83 of the complete
              sequence
          Length = 262557

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 575    catggtctccgactgttagttccaccttttgg 606
              ||||||||||||||| | |||||||| |||||
Sbjct: 106179 catggtctccgactgctcgttccaccatttgg 106210
to top
>gb|AC004725.1|AC004725 Drosophila melanogaster, chromosome 2L, region 29F2-29F3, P1 clone
             DS08760, complete sequence
          Length = 49649

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 575   catggtctccgactgttagttccaccttttgg 606
             ||||||||||||||| | |||||||| |||||
Sbjct: 15265 catggtctccgactgctcgttccaccatttgg 15296
to top
>gb|AC175115.1| Mus musculus BAC clone RP23-395E24 from chromosome 5, complete sequence
          Length = 202831

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcccactttttaaatgtata 195
              ||||||||||||||||||||
Sbjct: 166505 tcccactttttaaatgtata 166524



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 79448 tcccactttttaaatgtata 79467
to top
>gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, complete sequence
          Length = 201229

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tgtaatttaatcataactac 302
             ||||||||||||||||||||
Sbjct: 89139 tgtaatttaatcataactac 89120



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tgtaatttaatcataactac 369
             ||||||||||||||||||||
Sbjct: 89139 tgtaatttaatcataactac 89120
to top
>gb|AC138119.5| Mus musculus BAC clone RP23-307D8 from chromosome 5, complete sequence
          Length = 196908

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    tcccactttttaaatgtata 195
              ||||||||||||||||||||
Sbjct: 136284 tcccactttttaaatgtata 136265



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 42987 tcccactttttaaatgtata 42968
to top
>gb|AC174780.2| Mus musculus BAC clone RP23-92D22 from chromosome 5, complete sequence
          Length = 163023

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 88410 tcccactttttaaatgtata 88391



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 33808 tcccactttttaaatgtata 33789
to top
>gb|AC166054.3| Mus musculus BAC clone RP24-79B1 from chromosome 5, complete sequence
          Length = 241852

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcccactttttaaatgtata 195
              ||||||||||||||||||||
Sbjct: 167777 tcccactttttaaatgtata 167796



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 95079 tcccactttttaaatgtata 95098



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tcccactttttaaatgtata 195
             ||||||||||||||||||||
Sbjct: 40476 tcccactttttaaatgtata 40495
to top
>emb|AL928956.11| Mouse DNA sequence from clone RP23-74G16 on chromosome 2, complete
              sequence
          Length = 174347

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 416    aagattatctactaggatagcaaa 439
              |||||||||||||||| |||||||
Sbjct: 139176 aagattatctactaggttagcaaa 139153
to top
>gb|AC141559.4| Mus musculus BAC clone RP24-341O14 from 5, complete sequence
          Length = 142438

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcccactttttaaatgtata 195
              ||||||||||||||||||||
Sbjct: 111342 tcccactttttaaatgtata 111361
to top
>gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complete sequence
          Length = 166132

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   tatgaagtgtaatttaatca 362
             ||||||||||||||||||||
Sbjct: 55680 tatgaagtgtaatttaatca 55661
to top
>gb|AC172105.1| Mus musculus BAC clone RP24-225O2 from chromosome 5, complete
           sequence
          Length = 154723

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 tcccactttttaaatgtata 195
           ||||||||||||||||||||
Sbjct: 699 tcccactttttaaatgtata 680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,577,564
Number of Sequences: 3902068
Number of extensions: 5577564
Number of successful extensions: 134367
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134194
Number of HSP's gapped (non-prelim): 173
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top