ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20f19 |
|---|---|
| Clone Library Name | barley_pub |
>FAF1_HUMAN (Q9UNN5) FAS-associated factor 1 (Protein FAF1) (hFAF1)| Length = 650 Score = 49.7 bits (117), Expect = 8e-06 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Frame = -2 Query: 375 PMEPPSDK-EGVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCRPETYRLVRTYP 199 P EP + E V L +R P G RRFL S+K + +FDF+ + + Y+L+ T+P Sbjct: 562 PPEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFV-ASKGFPWDEYKLLSTFP 620 Query: 198 RRAFTTADGDQSFTDLGLTSKQEALFIE 115 RR T D ++S ++ L QE LF+E Sbjct: 621 RRDVTQLDPNKSLLEVKL-FPQETLFLE 647
>UBXD6_HUMAN (O00124) UBX domain-containing protein 6 (Rep-8 protein)| (Reproduction 8 protein) Length = 270 Score = 49.7 bits (117), Expect = 8e-06 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = -2 Query: 375 PMEPPSDKEGVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLD-VGRTCRPETYRLVRTYP 199 P EP E V+T+ +R P GN RRFLKS + LFD++ +G Y L ++P Sbjct: 181 PEEPSQTAEEVVTVALRCPSGNVLRRRFLKSYSSQVLFDWMTRIG--YHISLYSLSTSFP 238 Query: 198 RRAFTTADGDQSFTDLGLT 142 RR +G QS D+G+T Sbjct: 239 RRPL-AVEGGQSLEDIGIT 256
>FAF1_MOUSE (P54731) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Frame = -2 Query: 375 PMEPPSDK-EGVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCRPETYRLVRTYP 199 P EP + E V L +R P G RRFL S+K + +FDF+ + + ++L+ T+P Sbjct: 561 PPEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFV-ASKGFPWDEFKLLSTFP 619 Query: 198 RRAFTTADGDQSFTDLGLTSKQEALFIE 115 RR T D ++S ++ L QE LF++ Sbjct: 620 RRDVTQLDPNKSLLEVNL-FPQETLFLQ 646
>FAF1_RAT (Q924K2) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 47.0 bits (110), Expect = 5e-05 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -2 Query: 375 PMEPPSDK-EGVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCRPETYRLVRTYP 199 P EP + E V L +R P G RRFL S+K + +FDF+ + + ++L+ T+P Sbjct: 561 PPEPEEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFV-ASKGFPWDEFKLLSTFP 619 Query: 198 RRAFTTADGDQSFTDLGLTSKQEALFI 118 RR T D ++S ++ L QE LF+ Sbjct: 620 RRDVTQLDPNKSLLEVNL-FPQETLFL 645
>UBXD6_MOUSE (Q9QZ49) UBX domain-containing protein 6 (Rep-8 protein)| (Reproduction 8 protein) Length = 277 Score = 46.6 bits (109), Expect = 7e-05 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -2 Query: 375 PMEPPSDKEGVITLVVRMPDGNRQGRRFLKSDKFKSLFDF-LDVGRTCRPETYRLVRTYP 199 P EP E V+T+ +R P+G RRF KS + L D+ + VG YRL ++P Sbjct: 187 PEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG--YHKSLYRLSTSFP 244 Query: 198 RRAFTTADGDQSFTDLGLT 142 RRA +G S D+G+T Sbjct: 245 RRAL-EVEGGSSLEDIGIT 262
>YOJ8_CAEEL (P34631) Hypothetical protein ZK353.8 in chromosome III| Length = 469 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/84 (29%), Positives = 41/84 (48%) Frame = -2 Query: 363 PSDKEGVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCRPETYRLVRTYPRRAFT 184 PSD+ L VR+PDG+ F +D SL + + + T+ + + YPRR FT Sbjct: 279 PSDR---CRLQVRLPDGSTFVEEFPSNDVLNSLVEIIRQKPSIAGTTFEIQQPYPRRIFT 335 Query: 183 TADGDQSFTDLGLTSKQEALFIEQ 112 D ++F + LT + I++ Sbjct: 336 NDDYSKTFLENQLTPSTALVVIQK 359
>U33K_MOUSE (Q922Y1) UBA/UBX 33.3 kDa protein| Length = 297 Score = 37.7 bits (86), Expect = 0.033 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 5/80 (6%) Frame = -2 Query: 369 EPPSDKE-GVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCRP----ETYRLVRT 205 EPP+ +E + VR+PDG + F ++ ++ ++++ R P + +L+ Sbjct: 204 EPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEEPGQDQDPVQLLSG 263 Query: 204 YPRRAFTTADGDQSFTDLGL 145 +PRRAF+ AD ++ +LGL Sbjct: 264 FPRRAFSEADMERPLQELGL 283
>U33K_HUMAN (Q04323) UBA/UBX 33.3 kDa protein| Length = 297 Score = 34.7 bits (78), Expect = 0.28 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Frame = -2 Query: 369 EPPSDKE-GVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCR----PETYRLVRT 205 EPP+ +E + VR+PDG + F ++ ++ ++++ R + +L+ Sbjct: 204 EPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSG 263 Query: 204 YPRRAFTTADGDQSFTDLGL 145 +PRRAF+ AD ++ +LGL Sbjct: 264 FPRRAFSEADMERPLQELGL 283
>UBXD3_MOUSE (Q8BG34) UBX domain-containing protein 3| Length = 277 Score = 33.5 bits (75), Expect = 0.61 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Frame = -2 Query: 372 MEPPSDKEGVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCRPETYR----LVRT 205 +E PSD+E + L VR P G R R F SD +++ L+V TY+ Sbjct: 186 IEEPSDEEPRLLLAVRSPSGQRFVRYFRPSDDLQTV---LEVAEQKNKATYQHCSIETME 242 Query: 204 YPRRAFTTADGDQSFTDLGLTSK 136 PRR F +D +S + G+ K Sbjct: 243 VPRRRF--SDLTKSLQECGILHK 263
>UBX7_YEAST (P38349) UBX domain-containing protein 7| Length = 436 Score = 31.6 bits (70), Expect = 2.3 Identities = 21/71 (29%), Positives = 30/71 (42%) Frame = -2 Query: 336 LVVRMPDGNRQGRRFLKSDKFKSLFDFLDVGRTCRPETYRLVRTYPRRAFTTADGDQSFT 157 L +RM DG F S+ + ++DV RT Y R PR F +D ++ Sbjct: 219 LQIRMTDGKTLKHEFNSSETLNDVRKWVDVNRTDGDCPYSFHRGIPRVTFKDSDELKTLE 278 Query: 156 DLGLTSKQEAL 124 L LT + L Sbjct: 279 TLELTPRSALL 289
>UBXD3_HUMAN (Q96LJ8) UBX domain-containing protein 3| Length = 280 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = -2 Query: 372 MEPPSDKEGVITLVVRMPDGNRQGRRFLKSDKFKSLFDFLDVG-----RTCRPETYRLVR 208 +E PSD+E + L VR P G R R F +D +++ + R C ET + Sbjct: 189 LEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCSIETMEV-- 246 Query: 207 TYPRRAFT 184 PRR F+ Sbjct: 247 --PRRRFS 252 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,901,449 Number of Sequences: 219361 Number of extensions: 1525288 Number of successful extensions: 3795 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3793 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
