>YIF1A_MOUSE (Q91XB7) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 293

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
 Frame = -3

Query: 646 FLQVV-LIKGLLYSLGSGEAPLLDIVAYAGYGFAGTSLAML-ARIFWSYLYYFIMPWFCL 473
           F++V+ L+ GL  +    E     ++AY+GY + G  L++L   +F S  YY  + W   
Sbjct: 180 FMEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSS 239

Query: 472 CTGVFLVKTMKRVL-----LGGPRSYERHLSRNHYFLLFLAVVQFPMLFWL 335
               F+V++++        +GGP   +R      Y  L  A  Q  +++WL
Sbjct: 240 ALMYFIVRSLRTAASGPDSMGGPAPRQR---LQLYLTLGAAAFQPLIIYWL 287

>YIF1A_HUMAN (O95070) Protein YIF1A (YIP1-interacting factor homolog A) (54TMp)|
          Length = 293

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
 Frame = -3

Query: 637 VVLIKGLLYSLGSGEAPLLDIVAYAGYGFAGTSLAML-ARIFWSYLYYFIMPWFCLCTGV 461
           + L+ GL  +    +     ++AY+GY + G  L++L   +F S  YY  + W       
Sbjct: 184 LALLLGLYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSALMY 243

Query: 460 FLVKTMKRVLLGGPRSYERHLSRNH---YFLLFLAVVQFPMLFWL 335
           F+V++++   L GP S    + R     Y  L  A  Q  +++WL
Sbjct: 244 FIVRSLRTAAL-GPDSMGGPVPRQRLQLYLTLGAAAFQPLIIYWL 287

>YIF1A_BOVIN (Q3T196) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 293

 Score = 37.7 bits (86), Expect = 0.030
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
 Frame = -3

Query: 637 VVLIKGLLYSLGSGEAPLLDIVAYAGYGFAGTSLAML-ARIFWSYLYYFIMPWFCLCTGV 461
           + L+ G+  +    +     ++AY+GY + G  L++L   +F S  YY  + W       
Sbjct: 184 LALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSALMY 243

Query: 460 FLVKTMKRVLL-----GGPRSYERHLSRNHYFLLFLAVVQFPMLFWL 335
           F+V++++   L     GGP   +R      Y  L  A  Q  +++WL
Sbjct: 244 FIVRSLRTAALGPDSMGGPAPRQR---LQLYLTLGAAAFQPLIIYWL 287

>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 307

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 580 DIVAYAGYGFAGTSLAML-ARIFWSYLYYFIMPWFCLCTGVFLVKTMKRVLL 428
           D+VAY+GY + G  L +    +F S  YY  + W       F+V+++K  +L
Sbjct: 213 DLVAYSGYKYVGMILTVFCGLLFGSDGYYVALAWSSCALMFFIVRSLKMKIL 264

>MKL1_MOUSE (Q8K4J6) MKL/myocardin-like protein 1 (Myocardin-related|
           transcription factor A) (MRTF-A) (Megakaryoblastic
           leukemia 1 protein homolog) (Basic SAP coiled-coil
           transcription activator)
          Length = 964

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
 Frame = +1

Query: 142 ENGSYMRFHPFIQIALLASQEAKQLGKLLPSSPGKVNHRVYPAQDP--L*GRFTLPYDGK 315
           E    +R H   + +   S +AKQL          +N ++     P  L  +  LP +  
Sbjct: 70  ERAELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESS 129

Query: 316 INH*CCRARTASGTARPPGRAESSGFDSDAARSSLVHPEEPSSWSSQGT 462
           +     +     G    P  A+SS FD D+  S  + PE+P+S  SQG+
Sbjct: 130 L-----KEAIIVGQVNYPKVADSSSFDEDS--SDALSPEQPASHESQGS 171

>MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-related|
           transcription factor A) (MRTF-A) (Megakaryoblastic
           leukemia 1 protein) (Megacaryocytic acute leukemia
           protein)
          Length = 931

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
 Frame = +1

Query: 142 ENGSYMRFHPFIQIALLASQEAKQLGKLLPSSPGKVNHRVYPAQDP--L*GRFTLPYDGK 315
           E    +R H   + +   S +AKQL          +N ++     P  L  +  LP +  
Sbjct: 35  ERSELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESS 94

Query: 316 INH*CCRARTASGTARPPGRAESSGFDSDAARSSLVHPEEPSSWSSQGT 462
           +     +     G    P  A+SS FD D+  S  + PE+P+S  SQG+
Sbjct: 95  L-----KEAIIVGQVNYPKVADSSSFDEDS--SDALSPEQPASHESQGS 136

>HCN1_RAT (Q9JKB0) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1
          Length = 910

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 335 EPEQHRELHDRQEEQKVVVSTQMPLVAPWSTQKNPLH----GLHKEHASAETEP 484
           +P+Q ++   +Q++Q+     Q P     ST KN +H     LH  H + E  P
Sbjct: 753 QPQQQQQQQQQQQQQQQQQQQQQPQTPGSSTPKNEVHKSTQALHNTHLTREVRP 806

>BCL6_MOUSE (P41183) B-cell lymphoma 6 protein homolog|
          Length = 707

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 537 RDVP----ANPYPAYATMSSNGASPLPREYSKPLMRTT 638
           RD P    ANP+P    +  + A  +P EYS+P M  +
Sbjct: 214 RDAPRMPVANPFPKERALPCDSARQVPNEYSRPAMEVS 251

>BCL6_HUMAN (P41182) B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51)|
           (LAZ-3 protein) (BCL-5) (Zinc finger and BTB
           domain-containing protein 27)
          Length = 706

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 549 ANPYPAYATMSSNGASPLPREYSKPLMRTT 638
           ANP+P    +  + A P+P EYS+P +  +
Sbjct: 221 ANPFPKERALPCDSARPVPGEYSRPTLEVS 250

>TBB2_PHYPO (P12458) Tubulin beta-2 chain (Tubulin beta-major chain)|
          Length = 454

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 320 LIFPSYGNVNRP*RGSCAGYTRWLTFPGELGNSL 219
           L  P+YG++N    G  +G T  L FPG+L + L
Sbjct: 217 LTTPTYGDLNHLVSGVMSGITACLRFPGQLNSDL 250

>TBB_TETPY (P10876) Tubulin beta chain (Beta tubulin)|
          Length = 443

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 320 LIFPSYGNVNRP*RGSCAGYTRWLTFPGELGNSL 219
           L  P+YGN+N     + +G T  L FPG+L + L
Sbjct: 217 LTTPTYGNLNHLVSAAMSGVTCCLRFPGQLNSDL 250

>MRAY_FUSNN (Q8RDQ0) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 361

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
 Frame = -3

Query: 619 LLYSLGSGEAPL-LDIVAYAGYGFA-------------------GTSLAMLARIFWSYLY 500
           L Y++GSGE  + L  V  AG GF                    G  L ++A I    L 
Sbjct: 228 LFYTVGSGELSVFLSAVTGAGLGFLWYNCYPAQIFMGDTGSLTLGGILGVIAIILKQELM 287

Query: 499 YFIMPWFCLCTGVFLVKTMKRVLLGGPRSYERHLSRNHYFLLFLAVVQFPMLFWLGNI 326
             IM +  +   + ++  +    L G R ++     +H+ L+ +   +  M FW+G +
Sbjct: 288 LPIMGFIFVLEALSVILQVGSFKLRGKRIFKMAPIHHHFELMGIPESKVTMRFWIGTL 345

>TBB2_DAUCA (Q39697) Tubulin beta-2 chain (Beta-2 tubulin)|
          Length = 444

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 311 PSYGNVNRP*RGSCAGYTRWLTFPGELGNSL 219
           PS+G++N    G+ +G T  L FPG+L + L
Sbjct: 220 PSFGDLNHLISGTMSGVTCCLRFPGQLNSDL 250

>NOL6_XENTR (Q5M7P5) Nucleolar protein 6|
          Length = 1145

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 278 LFKVDSRYHTTGRSTTDVAEPEQHRELHDRQEEQKVVVSTQMPLVAPWSTQKNPLHGLHK 457
           +F+V   YH   +   ++  PE   +  D +E  ++ + T   L  P  T  + LHGLH+
Sbjct: 789 VFRVQVAYHREPQYMKEIVTPEGMLKYQDTEESLQLELET---LHLPSLT--STLHGLHQ 843

Query: 458 EH 463
           +H
Sbjct: 844 QH 845


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,007,867
Number of Sequences: 219361
Number of extensions: 2040868
Number of successful extensions: 5793
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5786
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)