ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20e16 |
|---|---|
| Clone Library Name | barley_pub |
>RK21_ARATH (P51412) 50S ribosomal protein L21, chloroplast precursor (CL21)| Length = 220 Score = 68.2 bits (165), Expect = 5e-12 Identities = 33/57 (57%), Positives = 39/57 (68%) Frame = -1 Query: 365 VHAIVEEQXLDDXXXXXXXXXXXKYQRKAGHRQPNTRLRITGISGYEEYPADPILQV 195 VHA+VE Q L+D KY+R GHRQPNTR+RITGI+GYEEYPA P + V Sbjct: 159 VHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPASPNVAV 215
>RK21_SPIOL (P24613) 50S ribosomal protein L21, chloroplast precursor (CL21)| (CS-L7) Length = 256 Score = 65.5 bits (158), Expect = 3e-11 Identities = 30/55 (54%), Positives = 37/55 (67%) Frame = -1 Query: 368 AVHAIVEEQXLDDXXXXXXXXXXXKYQRKAGHRQPNTRLRITGISGYEEYPADPI 204 AVHA+VEEQ LDD Y+R GHRQP TR++ITGI+GYE+YPA + Sbjct: 181 AVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTL 235
>RM21_ARATH (Q8L9A0) 50S ribosomal protein L21, mitochondrial precursor| Length = 270 Score = 45.4 bits (106), Expect = 3e-05 Identities = 25/59 (42%), Positives = 32/59 (54%) Frame = -1 Query: 365 VHAIVEEQXLDDXXXXXXXXXXXKYQRKAGHRQPNTRLRITGISGYEEYPADPILQVPA 189 VHA+VEE LD+ Y+R GHRQ T+LRIT I G E+ P I+ P+ Sbjct: 199 VHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIEK-PEPKIVHKPS 256
>RL21_RICPR (Q9ZCI9) 50S ribosomal protein L21| Length = 105 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -1 Query: 365 VHAIVEEQXLDDXXXXXXXXXXXKYQRKAGHRQPNTRLRITGIS 234 V A + Q D+ Y+RKAGHRQ T L+I I+ Sbjct: 60 VTAEITNQLKDNKIIAFKKKRRKNYRRKAGHRQELTELKILDIT 103
>RL21_THET8 (P60492) 50S ribosomal protein L21| Length = 101 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 293 YQRKAGHRQPNTRLRITGISG 231 Y+RK GHRQP T L I I G Sbjct: 81 YRRKKGHRQPYTELLIKEIRG 101
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W+ T G++ G+S++W VG L S + Sbjct: 42 WSMCRTNRGTVGGYFLAGRSMVWWPVGASLFASNI 76
>SC5A2_HUMAN (P31639) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 672 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W+ T G++ G+S++W VG L S + Sbjct: 42 WSMCRTNRGTVGGYFLAGRSMVWWPVGASLFASNI 76
>SC5A2_RAT (P53792) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W+ T G++ G+S++W VG L S + Sbjct: 40 WSMFRTNRGTVGGYFLAGRSMVWWPVGASLFASNI 74
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W+ T G++ G+S++W VG L S + Sbjct: 40 WSMFRTNRGTVGGYFLAGRSMVWWPVGASLFASNI 74
>Y4CK_RHISN (P55393) Putative replication protein A| Length = 407 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 14 TRSWWNKQKDGTNALQRMVAXLVH*LWGR 100 TRS + + D NA+ + LVH WGR Sbjct: 375 TRSTYERAMDSLNAVNAEIVELVHASWGR 403
>RL21_DEIRA (Q9RY64) 50S ribosomal protein L21| Length = 100 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -1 Query: 293 YQRKAGHRQPNTRLRITGISG 231 Y+R+ GHRQ T ++I GI G Sbjct: 80 YRRRTGHRQNFTAIKILGIQG 100
>RL21_STRGR (P95756) 50S ribosomal protein L21| Length = 106 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -1 Query: 293 YQRKAGHRQPNTRLRITGI 237 Y+R+ GHRQ T +++TGI Sbjct: 83 YRRRQGHRQQYTAIKVTGI 101
>SC5A1_RAT (P53790) Sodium/glucose cotransporter 1 (Na(+)/glucose| cotransporter 1) (High affinity sodium-glucose cotransporter) Length = 665 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/35 (25%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W +T G++ G+S++W +G L S + Sbjct: 45 WAMFSTNRGTVGGFFLAGRSMVWWPIGASLFASNI 79
>SC5A1_MOUSE (Q8C3K6) Sodium/glucose cotransporter 1 (Na(+)/glucose| cotransporter 1) (High affinity sodium-glucose cotransporter) Length = 665 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/35 (25%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W +T G++ G+S++W +G L S + Sbjct: 45 WAMFSTNRGTVGGFFLAGRSMVWWPIGASLFASNI 79
>SC5A1_SHEEP (P53791) Sodium/glucose cotransporter 1 (Na(+)/glucose| cotransporter 1) (High affinity sodium-glucose cotransporter) Length = 664 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/35 (25%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W +T G++ G+S++W +G L S + Sbjct: 45 WAMFSTNRGTVGGFFLAGRSMVWWPIGASLFASNI 79
>SC5A1_HUMAN (P13866) Sodium/glucose cotransporter 1 (Na(+)/glucose| cotransporter 1) (High affinity sodium-glucose cotransporter) Length = 664 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/35 (25%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W +T G++ G+S++W +G L S + Sbjct: 45 WAMFSTNRGTVGGFFLAGRSMVWWPIGASLFASNI 79
>SC5A1_RABIT (P11170) Sodium/glucose cotransporter 1 (Na(+)/glucose| cotransporter 1) (High affinity sodium-glucose cotransporter) Length = 662 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/35 (25%), Positives = 17/35 (48%) Frame = +1 Query: 43 WNQRTTTNGSIXSALTVGKSLIWGTVGQMLLXSXV 147 W +T G++ G+S++W +G L S + Sbjct: 45 WAMFSTNRGTVGGFFLAGRSMVWWPIGASLFASNI 79
>1C07_HUMAN (P10321) HLA class I histocompatibility antigen, Cw-7 alpha chain| precursor (MHC class I antigen Cw*7) Length = 366 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/20 (50%), Positives = 16/20 (80%) Frame = +2 Query: 8 RNTRSWWNKQKDGTNALQRM 67 RN R ++N+ +DG++ LQRM Sbjct: 103 RNLRGYYNQSEDGSHTLQRM 122
>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase| type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase 9) (xlAC) Length = 1305 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 2 FERNTRSWWNKQKDGTN 52 FER+T +WWN + D N Sbjct: 76 FERSTSNWWNPKFDSNN 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,974,274 Number of Sequences: 219361 Number of extensions: 558293 Number of successful extensions: 1140 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1140 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
