>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)|
          Length = 1032

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = -2

Query: 591  PHDCLLRTKINALKQDRCITPKLTFVRGGQDDSSLFENYLIEEQDVDGSGYASGNGFISF 412
            P+   LR  +  ++Q R  + KLT V+  +    +F  +L+E++     G   G+ ++ F
Sbjct: 965  PYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDK-----GLYGGSSYVDF 1019

Query: 411  REGIRNEVAEIL 376
               +  E+ ++L
Sbjct: 1020 LCCVHKEICQLL 1031

>ENV_SRV1 (P04027) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Coat protein GP20]
          Length = 587

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +2

Query: 425 PLPLAYPEPSTSCSSIR*FSNSDESSC---PPRTNVSFGVIHLSCFSA 559
           P+PLA P  +TSCS+   F N    SC   PP     F   H  C  A
Sbjct: 257 PVPLALPYDNTSCSNSTFFFNCSNCSCLITPPFLVQPFNFTHSVCLYA 304

>NAGPA_MOUSE (Q8BJ48) N-acetylglucosamine-1-phosphodiester|
           alpha-N-acetylglucosaminidase precursor (EC 3.1.4.45)
           (Phosphodiester alpha-GlcNAcase) (Mannose
           6-phosphate-uncovering enzyme)
          Length = 517

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 407 SRND--IKPLPLAYPEPSTSCSSIR*FSNSDESSCPPRTN 520
           SR+D  + P PLA   PS  C+ +R  S   ES  PP TN
Sbjct: 31  SRDDDLLLPYPLARRRPSRDCARVRSGSPEQESWPPPPTN 70

>POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.109)|
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           2) (dPOMT2)
          Length = 765

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 286 KELLTQSTPSSEPTGP*QSEARQLAATFFLEDFCHFIPY 402
           KE++ ++ PS  P  P  +++ + AA  FL    H++P+
Sbjct: 640 KEIVPKAVPSGSPEAPNPAQSLRAAAWLFLGWMLHYLPF 678

>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)|
          Length = 1094

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = -2

Query: 576  LRTKINALKQDRCITPKLTFVRGGQDDSSLFENYLIEEQDVDGSGYASGNGFISFREGIR 397
            +R  I++L+  R    KLT V+       LF+++L+E++ + G     G  ++ F   + 
Sbjct: 1032 VRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSG-----GASYVDFLCHMH 1086

Query: 396  NEVAEIL 376
             E+ ++L
Sbjct: 1087 KEIRQLL 1093


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,167,215
Number of Sequences: 219361
Number of extensions: 1940368
Number of successful extensions: 4335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4329
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)