ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20e13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 287 bits (145), Expect = 1e-74 Identities = 242/277 (87%) Strand = Plus / Minus Query: 1 tgatgaagggctgctccaggagggccatcacgccgngcctcttcgatatccgcccttcca 60 ||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| | Sbjct: 21699668 tgatgaaaggctgctccaggagggccagcacgccgagcctcttcgatatccggccttcga 21699609 Query: 61 cgatcttctncctgatgttntcgggttttgactgcaggtcctncctctgcatctcaatct 120 ||||||||| ||||||||| || ||||| ||||| ||||||| |||||||||||||||| Sbjct: 21699608 cgatcttctccctgatgttctcaggtttggactgaaggtcctctctctgcatctcaatct 21699549 Query: 121 ccttctccttgctgacaatactctctggtatgtcgnccattgagacatattcgacctgcg 180 | ||||||||| |||||| ||||||||| ||||| | || |||||||| || ||||| | Sbjct: 21699548 ctttctccttgatgacaacactctctgggatgtcctctatggagacatactcaacctgtg 21699489 Query: 181 ggcatgccaccacttgcattgcgaggtcattcaccagctccttgaatttctcattgcgag 240 | ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 21699488 gacatgccaccacctgcatcgcgaggtcgttcaccagctccttgaacttctcgttgcgag 21699429 Query: 241 ccacgaagtcngnctcagagttgattncaatcatgca 277 |||||||||| | ||| || ||||| |||||||||| Sbjct: 21699428 ccacgaagtcggtctcggaattgatctcaatcatgca 21699392
>dbj|AK119540.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C06, full insert sequence Length = 1368 Score = 287 bits (145), Expect = 1e-74 Identities = 242/277 (87%) Strand = Plus / Minus Query: 1 tgatgaagggctgctccaggagggccatcacgccgngcctcttcgatatccgcccttcca 60 ||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| | Sbjct: 1022 tgatgaaaggctgctccaggagggccagcacgccgagcctcttcgatatccggccttcga 963 Query: 61 cgatcttctncctgatgttntcgggttttgactgcaggtcctncctctgcatctcaatct 120 ||||||||| ||||||||| || ||||| ||||| ||||||| |||||||||||||||| Sbjct: 962 cgatcttctccctgatgttctcaggtttggactgaaggtcctctctctgcatctcaatct 903 Query: 121 ccttctccttgctgacaatactctctggtatgtcgnccattgagacatattcgacctgcg 180 | ||||||||| |||||| ||||||||| ||||| | || |||||||| || ||||| | Sbjct: 902 ctttctccttgatgacaacactctctgggatgtcctctatggagacatactcaacctgtg 843 Query: 181 ggcatgccaccacttgcattgcgaggtcattcaccagctccttgaatttctcattgcgag 240 | ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 842 gacatgccaccacctgcatcgcgaggtcgttcaccagctccttgaacttctcgttgcgag 783 Query: 241 ccacgaagtcngnctcagagttgattncaatcatgca 277 |||||||||| | ||| || ||||| |||||||||| Sbjct: 782 ccacgaagtcggtctcggaattgatctcaatcatgca 746
>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full insert sequence Length = 3861 Score = 287 bits (145), Expect = 1e-74 Identities = 242/277 (87%) Strand = Plus / Minus Query: 1 tgatgaagggctgctccaggagggccatcacgccgngcctcttcgatatccgcccttcca 60 ||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| | Sbjct: 3515 tgatgaaaggctgctccaggagggccagcacgccgagcctcttcgatatccggccttcga 3456 Query: 61 cgatcttctncctgatgttntcgggttttgactgcaggtcctncctctgcatctcaatct 120 ||||||||| ||||||||| || ||||| ||||| ||||||| |||||||||||||||| Sbjct: 3455 cgatcttctccctgatgttctcaggtttggactgaaggtcctctctctgcatctcaatct 3396 Query: 121 ccttctccttgctgacaatactctctggtatgtcgnccattgagacatattcgacctgcg 180 | ||||||||| |||||| ||||||||| ||||| | || |||||||| || ||||| | Sbjct: 3395 ctttctccttgatgacaacactctctgggatgtcctctatggagacatactcaacctgtg 3336 Query: 181 ggcatgccaccacttgcattgcgaggtcattcaccagctccttgaatttctcattgcgag 240 | ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 3335 gacatgccaccacctgcatcgcgaggtcgttcaccagctccttgaacttctcgttgcgag 3276 Query: 241 ccacgaagtcngnctcagagttgattncaatcatgca 277 |||||||||| | ||| || ||||| |||||||||| Sbjct: 3275 ccacgaagtcggtctcggaattgatctcaatcatgca 3239
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 287 bits (145), Expect = 1e-74 Identities = 242/277 (87%) Strand = Plus / Minus Query: 1 tgatgaagggctgctccaggagggccatcacgccgngcctcttcgatatccgcccttcca 60 ||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| | Sbjct: 21628013 tgatgaaaggctgctccaggagggccagcacgccgagcctcttcgatatccggccttcga 21627954 Query: 61 cgatcttctncctgatgttntcgggttttgactgcaggtcctncctctgcatctcaatct 120 ||||||||| ||||||||| || ||||| ||||| ||||||| |||||||||||||||| Sbjct: 21627953 cgatcttctccctgatgttctcaggtttggactgaaggtcctctctctgcatctcaatct 21627894 Query: 121 ccttctccttgctgacaatactctctggtatgtcgnccattgagacatattcgacctgcg 180 | ||||||||| |||||| ||||||||| ||||| | || |||||||| || ||||| | Sbjct: 21627893 ctttctccttgatgacaacactctctgggatgtcctctatggagacatactcaacctgtg 21627834 Query: 181 ggcatgccaccacttgcattgcgaggtcattcaccagctccttgaatttctcattgcgag 240 | ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 21627833 gacatgccaccacctgcatcgcgaggtcgttcaccagctccttgaacttctcgttgcgag 21627774 Query: 241 ccacgaagtcngnctcagagttgattncaatcatgca 277 |||||||||| | ||| || ||||| |||||||||| Sbjct: 21627773 ccacgaagtcggtctcggaattgatctcaatcatgca 21627737
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 287 bits (145), Expect = 1e-74 Identities = 242/277 (87%) Strand = Plus / Plus Query: 1 tgatgaagggctgctccaggagggccatcacgccgngcctcttcgatatccgcccttcca 60 ||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| | Sbjct: 112883 tgatgaaaggctgctccaggagggccagcacgccgagcctcttcgatatccggccttcga 112942 Query: 61 cgatcttctncctgatgttntcgggttttgactgcaggtcctncctctgcatctcaatct 120 ||||||||| ||||||||| || ||||| ||||| ||||||| |||||||||||||||| Sbjct: 112943 cgatcttctccctgatgttctcaggtttggactgaaggtcctctctctgcatctcaatct 113002 Query: 121 ccttctccttgctgacaatactctctggtatgtcgnccattgagacatattcgacctgcg 180 | ||||||||| |||||| ||||||||| ||||| | || |||||||| || ||||| | Sbjct: 113003 ctttctccttgatgacaacactctctgggatgtcctctatggagacatactcaacctgtg 113062 Query: 181 ggcatgccaccacttgcattgcgaggtcattcaccagctccttgaatttctcattgcgag 240 | ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 113063 gacatgccaccacctgcatcgcgaggtcgttcaccagctccttgaacttctcgttgcgag 113122 Query: 241 ccacgaagtcngnctcagagttgattncaatcatgca 277 |||||||||| | ||| || ||||| |||||||||| Sbjct: 113123 ccacgaagtcggtctcggaattgatctcaatcatgca 113159
>dbj|AK062059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C08, full insert sequence Length = 404 Score = 85.7 bits (43), Expect = 7e-14 Identities = 54/58 (93%) Strand = Plus / Minus Query: 1 tgatgaagggctgctccaggagggccatcacgccgngcctcttcgatatccgcccttc 58 ||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| Sbjct: 58 tgatgaaaggctgctccaggagggccagcacgccgagcctcttcgatatccggccttc 1
>gb|AY107637.1| Zea mays PCO086097 mRNA sequence Length = 551 Score = 54.0 bits (27), Expect = 2e-04 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 189 accacttgcattgcg-aggtcattcaccagctccttgaatttctcattgcgagccacgaa 247 ||||||||||| ||| ||||| |||||||||||| || | || || ||||| |||||||| Sbjct: 455 accacttgcatcgcggaggtcgttcaccagctccctggacttgtcgttgcgggccacgaa 396 Query: 248 gtcngnctcagagttga 264 ||| | ||| ||||||| Sbjct: 395 gtcggtctcggagttga 379
>emb|CR727630.2|CNS0GODW Tetraodon nigroviridis full-length cDNA Length = 1055 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Minus Query: 213 accagctccttgaatttctcattgcgagccacgaagtc 250 ||||||| || ||| ||||||||||||||||| ||||| Sbjct: 441 accagctgctggaacttctcattgcgagccacaaagtc 404
>emb|CR664157.2|CNS0FBFN Tetraodon nigroviridis full-length cDNA Length = 1131 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Minus Query: 213 accagctccttgaatttctcattgcgagccacgaagtc 250 ||||||| || ||| ||||||||||||||||| ||||| Sbjct: 448 accagctgctggaacttctcattgcgagccacaaagtc 411
>emb|CR662603.2|CNS0FA8H Tetraodon nigroviridis full-length cDNA Length = 1113 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Minus Query: 213 accagctccttgaatttctcattgcgagccacgaagtc 250 ||||||| || ||| ||||||||||||||||| ||||| Sbjct: 441 accagctgctggaacttctcattgcgagccacaaagtc 404
>emb|CR645115.2|CNS0EWQP Tetraodon nigroviridis full-length cDNA Length = 1143 Score = 44.1 bits (22), Expect = 0.24 Identities = 34/38 (89%) Strand = Plus / Minus Query: 213 accagctccttgaatttctcattgcgagccacgaagtc 250 ||||||| || ||| ||||||||||||||||| ||||| Sbjct: 440 accagctgctggaacttctcattgcgagccacaaagtc 403
>emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 11/11 Length = 307337 Score = 44.1 bits (22), Expect = 0.24 Identities = 31/35 (88%) Strand = Plus / Minus Query: 237 cgagccacgaagtcngnctcagagttgattncaat 271 ||||| |||||||| | ||||||||||||| |||| Sbjct: 180440 cgagcaacgaagtcagtctcagagttgatttcaat 180406
>gb|AC144473.8| Medicago truncatula clone mth2-15l5, complete sequence Length = 128860 Score = 44.1 bits (22), Expect = 0.24 Identities = 37/42 (88%) Strand = Plus / Plus Query: 192 acttgcattgcgaggtcattcaccagctccttgaatttctca 233 ||||||||||| || |||| |||| |||||||||||||||| Sbjct: 33861 acttgcattgcaagatcatcaaccaactccttgaatttctca 33902
>emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chromosome 4, complete sequence Length = 152376 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 catctcaatctccttctcctt 130 ||||||||||||||||||||| Sbjct: 94449 catctcaatctccttctcctt 94429
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccagctccttgaatttctca 233 |||||||||||||||||||| Sbjct: 2458727 ccagctccttgaatttctca 2458746
>gb|AY109575.1| Zea mays CL1708_1 mRNA sequence Length = 2612 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tgatgaagggctgctccaggaggg 24 ||||| |||||||||||||||||| Sbjct: 2254 tgatgtagggctgctccaggaggg 2231 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,756,081 Number of Sequences: 3902068 Number of extensions: 1756081 Number of successful extensions: 32011 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31952 Number of HSP's gapped (non-prelim): 59 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
