ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20e07 |
|---|---|
| Clone Library Name | barley_pub |
>MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO) (Eigth twenty| one protein) (Cyclin D-related protein) (Zinc finger MYND domain-containing protein 2) Length = 604 Score = 33.5 bits (75), Expect = 0.64 Identities = 31/118 (26%), Positives = 50/118 (42%) Frame = -3 Query: 435 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHRXXXXXXXXXXX*VD 256 PP + APR +S +P + + SP A +PSP +G NG + Sbjct: 58 PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG------PSSSSSSSLAN 111 Query: 255 QILPVFTQWECITW*ESRVDQILPTVTKLSKILNKDLPVRV*FYRVLYFGI*YSSQTI 82 Q LP C S++ + L T+ + ++ ++ RV R L G+ S+ TI Sbjct: 112 QQLPP----ACGARQLSKLKRFLTTLQQFGNDISPEIGERV---RTLVLGLVNSTLTI 162
>MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)| Length = 577 Score = 33.5 bits (75), Expect = 0.64 Identities = 31/118 (26%), Positives = 50/118 (42%) Frame = -3 Query: 435 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHRXXXXXXXXXXX*VD 256 PP + APR +S +P + + SP A +PSP +G NG + Sbjct: 31 PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG------PSSSSSSSLAN 84 Query: 255 QILPVFTQWECITW*ESRVDQILPTVTKLSKILNKDLPVRV*FYRVLYFGI*YSSQTI 82 Q LP C S++ + L T+ + ++ ++ RV R L G+ S+ TI Sbjct: 85 QQLPP----ACGARQLSKLKRFLTTLQQFGNDISPEIGERV---RTLVLGLVNSTLTI 135
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -3 Query: 435 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 322 PPG PAP N P P N P+++GR P P D Sbjct: 343 PPGGPPPAPHVN---PAFFPPPGNNMPSSDGRGPPPGD 377
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 438 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGR 340 TPPG + P PR +SR P ++PA +GR Sbjct: 135 TPPGQQRPHPRSHSREPRAERKCPRIAPADSGR 167
>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3| (Elongin A3) (EloA3) (Transcription elongation factor B polypeptide 3C) Length = 546 Score = 32.0 bits (71), Expect = 1.9 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 438 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSP 328 TPPG + P PR SR P M+PA +G P Sbjct: 135 TPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDP 171
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 31.6 bits (70), Expect = 2.4 Identities = 26/107 (24%), Positives = 28/107 (26%) Frame = +1 Query: 307 AIVFAVPGARATTICSWAHVIRAVSLHRTPAVLPWCXXXXXXXXXXXXXXXXXXXTPPRA 486 A A ATT S A S T A A Sbjct: 228 ATTTAATTTAATT--SSATTAATTSSTTTAATTTAATTTAATTTAATTTAATTTAATTTA 285 Query: 487 AAVTGAPXXXXXXXXXXXXXXXVSGAPPRAATVTGAPPWAATVTGAP 627 A T A + A AAT T A AAT TG+P Sbjct: 286 ATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTGSP 332
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Frame = -3 Query: 426 SRSPAPRENSRSPMKAD---SPNNMSPAANGRSPSP 328 +RSP+PR S SP D SP +P+ R PSP Sbjct: 17 TRSPSPRTQSPSPRDEDGSRSPGERTPSPPSRDPSP 52 Score = 30.4 bits (67), Expect = 5.4 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -3 Query: 432 PGSRSPAPREN--SRSPMKADSPNNMSPAAN-GRSPSPR 325 P SRSP PR SR +++ SP SPA RS SPR Sbjct: 81 PRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPR 119 Score = 29.6 bits (65), Expect = 9.2 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -3 Query: 432 PGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 298 P +RSP PR +SR SP G+ P PR + G++R Sbjct: 118 PRARSPPPRRHSR-----------SPPLRGQPPPPRHRDAGGDYR 151 Score = 29.6 bits (65), Expect = 9.2 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 432 PGSRSPAPRENSRSPMKADSPNNMSPA-ANGRSPSPRD 322 PG R+P+P SP ++ SP+ RS SPRD Sbjct: 38 PGERTPSPPSRDPSPYRSPGERTPSPSPRRDRSLSPRD 75
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -3 Query: 426 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 325 SRSP + + RSP K+ S + P + RSPSPR Sbjct: 233 SRSPKAKSSRRSPAKSTS-RSPGPRSKSRSPSPR 265
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 31.2 bits (69), Expect = 3.2 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = -3 Query: 438 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPS 331 TPPG +P P S +P ADSP SP A PS Sbjct: 475 TPPGPATPGPVGASAAP-TADSPLTASPPATAPGPS 509
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 31.2 bits (69), Expect = 3.2 Identities = 20/96 (20%), Positives = 25/96 (26%) Frame = +1 Query: 340 TTICSWAHVIRAVSLHRTPAVLPWCXXXXXXXXXXXXXXXXXXXTPPRAAAVTGAPXXXX 519 TT + + + T A AA T A Sbjct: 168 TTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTSS 227 Query: 520 XXXXXXXXXXXVSGAPPRAATVTGAPPWAATVTGAP 627 + A AAT T A AAT TG+P Sbjct: 228 ATTAATTTAATTTAATTTAATTTAATTTAATTTGSP 263
>TMSP8_RAT (P83748) Transmembrane serine protease 8 precursor (EC 3.4.21.-)| (Distal intestinal serine protease) (Transmembrane serine protease 1) (TMSP-1) Length = 304 Score = 30.8 bits (68), Expect = 4.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 276 VMHFHWVHDGCHCLRRPWGSGYDHLQLG 359 ++H WV HC RRP S + H+++G Sbjct: 61 LIHEVWVLTAAHCFRRPLNSSFYHVKVG 88
>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein| 12) (Small proline-rich-like epidermal differentiation complex protein 1A) Length = 110 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = +3 Query: 375 CQPSSDSCCSPLVQGFCCQEGWG 443 C PSS SCC P G CC G G Sbjct: 48 CGPSSGSCCGP-SSGGCCSSGGG 69
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 30.4 bits (67), Expect = 5.4 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -3 Query: 423 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGN 304 RSP+P SRSP + SP RS SP D D N Sbjct: 279 RSPSPPRGSRSPSEKGSPR------RSRSASPMDNGDGDN 312
>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin) Length = 1004 Score = 30.4 bits (67), Expect = 5.4 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -3 Query: 435 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSP-SPRDGEDN 310 PPG P PR SPM+A P +PA + R P P D +D+ Sbjct: 250 PPGENDPEPRYLVHSPMRAPRP-FAAPALSQRWPLPPGDSKDS 291
>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein| 11) Length = 110 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = +3 Query: 375 CQPSSDSCCSPLVQGFCCQEGWG 443 C PSS SCC P G CC G G Sbjct: 48 CGPSSGSCCGP-SSGGCCSSGAG 69
>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)| Length = 162 Score = 30.0 bits (66), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 372 GCQPSSDSCCSPLVQGFCC 428 GC+ +S CC P+ QG CC Sbjct: 104 GCKCTSCQCCKPVQQGCCC 122
>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2| Length = 880 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 435 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 322 PP P P ++ +SP+ +P++ SPA SP +D Sbjct: 73 PPVMPLPLPDDSGQSPIVRPAPSSHSPAKREESPGKQD 110
>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)| Length = 439 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -1 Query: 626 GAPVTVAAQGGAPVTVAALGGAP 558 GAP A+GGAP A GGAP Sbjct: 89 GAPAPAPAEGGAPAPAPAEGGAP 111 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -1 Query: 626 GAPVTVAAQGGAPVTVAALGGAP 558 GAP A+GGAP A GGAP Sbjct: 79 GAPAPAPAEGGAPAPAPAEGGAP 101
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 30.0 bits (66), Expect = 7.1 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -3 Query: 435 PPGSRSPAPRENSRSPMKAD-SPNNMSPAANGRSPSPRDG 319 PPG ++ +RSPM + +PN MSP + GR P P G Sbjct: 121 PPGQQNAF----NRSPMMPNGTPNMMSPPSMGRVPGPSPG 156
>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2| Length = 891 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 435 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 322 PP P P ++ +SP+ +P++ SPA SP +D Sbjct: 73 PPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPGKQD 110
>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament| protein) (Neurofilament heavy polypeptide) (NF-H) Length = 1072 Score = 30.0 bits (66), Expect = 7.1 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Frame = -3 Query: 438 TPPGSRSPAPREN---SRSPMKADSPNNMSPAANGRSPS 331 +P G++SPA ++ ++SP +A SP P A +SP+ Sbjct: 696 SPAGAKSPAEAKSPVVAKSPAEAKSPAEAKPPAEAKSPA 734
>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 30.0 bits (66), Expect = 7.1 Identities = 21/51 (41%), Positives = 21/51 (41%) Frame = +1 Query: 475 PPRAAAVTGAPXXXXXXXXXXXXXXXVSGAPPRAATVTGAPPWAATVTGAP 627 PPR A V G P V GA R ATVT P TV GAP Sbjct: 308 PPRGALVRGTP---------------VRGAITRGATVTRGVPPPPTVRGAP 343
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 30.0 bits (66), Expect = 7.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -3 Query: 423 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 298 RS +PR SRSP + S + + RSP RD D+ + R Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRR 156
>CUT1_CAEEL (Q03755) Cuticlin-1 precursor| Length = 424 Score = 30.0 bits (66), Expect = 7.1 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -1 Query: 653 PQGGMKGAQGAPVTVAAQGGAPVTVAALGGA 561 PQ G++ Q APV AA APV AA A Sbjct: 293 PQAGVEEVQAAPVAAAAPVAAPVAAAAAAPA 323
>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor| (Salivary proline-rich protein Po) (Parotid o protein) [Contains: Protein N1; Glycosylated protein A] Length = 247 Score = 29.6 bits (65), Expect = 9.2 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = -2 Query: 460 QGEGPEPHPSWQQKPCTKGEQQESDEG*QP**HEPSCKWS*PEPQGRRRQWQP 302 Q +GP PHP ++P +G Q +G P P K P PQG + +P Sbjct: 88 QSQGPPPHPGKPERPPPQGGNQ--SQGTPP----PPGKPERPPPQGGNQSHRP 134
>SLBP_DROME (Q9VAN6) Histone RNA hairpin-binding protein (Histone| stem-loop-binding protein) Length = 276 Score = 29.6 bits (65), Expect = 9.2 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 426 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGED 313 S +P ENSRS +SPN+ + +ANG + +P+ G + Sbjct: 118 SFTPPSNENSRS----NSPNSSNSSANGDAAAPKGGNN 151
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 29.6 bits (65), Expect = 9.2 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 586 TGAPPWAATVTGAP*APFIPPW 651 T AP AA GAP AP++P W Sbjct: 879 TTAPAAAAAAAGAPAAPYVPKW 900 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,129,726 Number of Sequences: 219361 Number of extensions: 1555193 Number of successful extensions: 6323 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6273 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
