ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106405.1| Zea mays PCO131557 mRNA sequence 256 7e-65
2ref|XM_473145.1| Oryza sativa (japonica cultivar-group), predic... 252 1e-63
3dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 1e-63
4dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 1e-63
5emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 115 2e-22
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
7dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.53
8gb|AC117523.2| Homo sapiens chromosome 5 clone RP11-1084O22, com... 42 2.1
9gb|AC094096.2| Homo sapiens chromosome 5 clone RP11-11P11, compl... 42 2.1
10gb|AC132271.5| Mus musculus BAC clone RP24-338E23 from 5, comple... 42 2.1
11gb|DQ004855.1| Listeria bacteriophage P100, complete genome 42 2.1
12ref|NM_118966.2| Arabidopsis thaliana unknown protein AT4G28260 ... 40 8.3
13gb|BT018270.1| Zea mays clone EL01T0203C06.c mRNA sequence 40 8.3
14gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome... 40 8.3
15emb|BX548040.19| Zebrafish DNA sequence from clone CH211-190L11 ... 40 8.3
16emb|AL357507.9| Human DNA sequence from clone RP11-694J20 on chr... 40 8.3
17emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 8.3
18emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 40 8.3
19emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 40 8.3
20gb|AY136412.1| Arabidopsis thaliana putative protein (At4g28260)... 40 8.3
21gb|AC116357.2| Homo sapiens chromosome 5 clone RP11-668G8, compl... 40 8.3
22emb|BX296539.5| Zebrafish DNA sequence from clone DKEYP-13E2 in ... 40 8.3
23emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 i... 40 8.3
24dbj|AP004950.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 8.3
25emb|AJ271911.1|MMU271911 Mus musculus TSC1 gene for hamartin 40 8.3
26emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on ch... 40 8.3
27gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Can... 40 8.3 
>gb|AY106405.1| Zea mays PCO131557 mRNA sequence
          Length = 797

 Score =  256 bits (129), Expect = 7e-65
 Identities = 237/273 (86%)
 Strand = Plus / Minus

                                                                       
Query: 176 cccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactcttt 235
           |||| ||||||| || ||||||||||||||||| || ||||| ||||| || ||||||||
Sbjct: 584 cccaaacttgcagactgggcacagtttctttctcctaagccactcgtcaatacactcttt 525

                                                                       
Query: 236 atggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttccag 295
           |||||||||||||||||| ||||||  |||||| |||||||| | ||| |||||||| ||
Sbjct: 524 atggaacttgtgaaagcaaggcaaatggcggatagtatctcccacagaaggattttcaag 465

                                                                       
Query: 296 gcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagttatt 355
           |||||| | ||| || |||||| ||||| | ||||||| ||||||||| ||||| |||||
Sbjct: 464 gcagacagaacatggatcttcaatgctattggactgaactactgactgtggcaaattatt 405

                                                                       
Query: 356 gatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagcgc 415
           |||||| ||||| |||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 404 gatctggctttctgaagcaccagtgtgctggtggttattttcatccagagcaagcagtgc 345

                                            
Query: 416 atcataatcatttaaatcaatattaggttgaat 448
           |||||| |||||||| ||||| || ||||||||
Sbjct: 344 atcatagtcatttaagtcaatgtttggttgaat 312
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>ref|XM_473145.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2193

 Score =  252 bits (127), Expect = 1e-63
 Identities = 246/285 (86%), Gaps = 3/285 (1%)
 Strand = Plus / Minus

                                                                        
Query: 174  atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 233
            |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 2186 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 2127

                                                                        
Query: 234  ttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttcc 293
            ||||||||| ||||||||||||||||   |||||| ||||| |||| ||| ||||| || 
Sbjct: 2126 ttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggattatca 2067

                                                                        
Query: 294  aggcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagtta 353
            ||||| || ||||| ||||||||| |   | ||||||| | ||||||||||||||| |||
Sbjct: 2066 aggcaaactgcacacggctcttcaat---atttgactggattactgactgaggcaaatta 2010

                                                                        
Query: 354  ttgatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagc 413
            |||||||| ||||| ||||||||||  ||||||||||||||||||||||  ||||| || 
Sbjct: 2009 ttgatctggctttctgaagcaccagcatgctggtggttattttcatctaatgcaagcagt 1950

                                                         
Query: 414  gcatcataatcatttaaatcaatattaggttgaatatgcgcagca 458
            |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 1949 gcatcataatcatttagatcaatattaggttgaatatgtgcagca 1905
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>dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048J15, full
            insert sequence
          Length = 2753

 Score =  252 bits (127), Expect = 1e-63
 Identities = 246/285 (86%), Gaps = 3/285 (1%)
 Strand = Plus / Minus

                                                                        
Query: 174  atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 233
            |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 2487 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 2428

                                                                        
Query: 234  ttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttcc 293
            ||||||||| ||||||||||||||||   |||||| ||||| |||| ||| ||||| || 
Sbjct: 2427 ttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggattatca 2368

                                                                        
Query: 294  aggcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagtta 353
            ||||| || ||||| ||||||||| |   | ||||||| | ||||||||||||||| |||
Sbjct: 2367 aggcaaactgcacacggctcttcaat---atttgactggattactgactgaggcaaatta 2311

                                                                        
Query: 354  ttgatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagc 413
            |||||||| ||||| ||||||||||  ||||||||||||||||||||||  ||||| || 
Sbjct: 2310 ttgatctggctttctgaagcaccagcatgctggtggttattttcatctaatgcaagcagt 2251

                                                         
Query: 414  gcatcataatcatttaaatcaatattaggttgaatatgcgcagca 458
            |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 2250 gcatcataatcatttagatcaatattaggttgaatatgtgcagca 2206
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>dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B14, full
            insert sequence
          Length = 3674

 Score =  252 bits (127), Expect = 1e-63
 Identities = 246/285 (86%), Gaps = 3/285 (1%)
 Strand = Plus / Minus

                                                                        
Query: 174  atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 233
            |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 3408 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 3349

                                                                        
Query: 234  ttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattttcc 293
            ||||||||| ||||||||||||||||   |||||| ||||| |||| ||| ||||| || 
Sbjct: 3348 ttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggattatca 3289

                                                                        
Query: 294  aggcagaccgcacaaggctcttcagtgctagttgactgaaatactgactgaggcaagtta 353
            ||||| || ||||| ||||||||| |   | ||||||| | ||||||||||||||| |||
Sbjct: 3288 aggcaaactgcacacggctcttcaat---atttgactggattactgactgaggcaaatta 3232

                                                                        
Query: 354  ttgatctgactttccgaagcaccagtgtgctggtggttattttcatctagcgcaagtagc 413
            |||||||| ||||| ||||||||||  ||||||||||||||||||||||  ||||| || 
Sbjct: 3231 ttgatctggctttctgaagcaccagcatgctggtggttattttcatctaatgcaagcagt 3172

                                                         
Query: 414  gcatcataatcatttaaatcaatattaggttgaatatgcgcagca 458
            |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 3171 gcatcataatcatttagatcaatattaggttgaatatgtgcagca 3127
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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Plus

                                                                         
Query: 335   tactgactgaggcaagttattgatctgactttccgaagcaccagtgtgctggtggttatt 394
             ||||||||||||||| ||||||||||| ||||| ||||||||||  ||||||||||||||
Sbjct: 33970 tactgactgaggcaaattattgatctggctttctgaagcaccagcatgctggtggttatt 34029

                                               
Query: 395   ttcatctagcgcaagtagcgcatcataatcattt 428
             ||||||||  ||||| || |||||||||||||||
Sbjct: 34030 ttcatctaatgcaagcagtgcatcataatcattt 34063



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                         
Query: 231   tctttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattt 290
             |||||||||||| ||||||||||||||||   |||||| ||||| |||| ||| ||||| 
Sbjct: 33775 tctttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggatta 33834

                                        
Query: 291   tccaggcagaccgcacaaggctcttca 317
             || ||||| || ||||| |||||||||
Sbjct: 33835 tcaaggcaaactgcacacggctcttca 33861



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 174   atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcact 231
             |||||| |||||||||| || || |||||||| ||||| ||||||||||| |||||||
Sbjct: 33597 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcact 33654



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 431   atcaatattaggttgaatatgcgcagca 458
             ||||||||||||||||||||| ||||||
Sbjct: 34353 atcaatattaggttgaatatgtgcagca 34380
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Plus

                                                                            
Query: 335      tactgactgaggcaagttattgatctgactttccgaagcaccagtgtgctggtggttatt 394
                ||||||||||||||| ||||||||||| ||||| ||||||||||  ||||||||||||||
Sbjct: 25547773 tactgactgaggcaaattattgatctggctttctgaagcaccagcatgctggtggttatt 25547832

                                                  
Query: 395      ttcatctagcgcaagtagcgcatcataatcattt 428
                ||||||||  ||||| || |||||||||||||||
Sbjct: 25547833 ttcatctaatgcaagcagtgcatcataatcattt 25547866



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                            
Query: 231      tctttatggaacttgtgaaagcatggcaaagtgcggatggtatctccaaaagatggattt 290
                |||||||||||| ||||||||||||||||   |||||| ||||| |||| ||| ||||| 
Sbjct: 25547578 tctttatggaacatgtgaaagcatggcaagcggcggatcgtatcaccaatagagggatta 25547637

                                           
Query: 291      tccaggcagaccgcacaaggctcttca 317
                || ||||| || ||||| |||||||||
Sbjct: 25547638 tcaaggcaaactgcacacggctcttca 25547664



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 174      atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcact 231
                |||||| |||||||||| || || |||||||| ||||| ||||||||||| |||||||
Sbjct: 25547400 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcact 25547457



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 431      atcaatattaggttgaatatgcgcagca 458
                ||||||||||||||||||||| ||||||
Sbjct: 25548156 atcaatattaggttgaatatgtgcagca 25548183
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>dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-683O4, complete
             sequence
          Length = 212884

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 329   ctgaaatactgactgaggcaag 350
             ||||||||||||||||||||||
Sbjct: 78502 ctgaaatactgactgaggcaag 78481
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>gb|AC117523.2| Homo sapiens chromosome 5 clone RP11-1084O22, complete sequence
          Length = 124957

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 419   ataatcatttaaatcaatattaggt 443
             |||||||| ||||||||||||||||
Sbjct: 31779 ataatcatgtaaatcaatattaggt 31755
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>gb|AC094096.2| Homo sapiens chromosome 5 clone RP11-11P11, complete sequence
          Length = 156194

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 419   ataatcatttaaatcaatattaggt 443
             |||||||| ||||||||||||||||
Sbjct: 70330 ataatcatgtaaatcaatattaggt 70306
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>gb|AC132271.5| Mus musculus BAC clone RP24-338E23 from 5, complete sequence
          Length = 173029

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    gatggattttccaggcagacc 302
              |||||||||||||||||||||
Sbjct: 115994 gatggattttccaggcagacc 115974
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>gb|DQ004855.1| Listeria bacteriophage P100, complete genome
          Length = 131384

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    ggaagaacacgaaaactaaaa 151
              |||||||||||||||||||||
Sbjct: 113003 ggaagaacacgaaaactaaaa 112983
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>ref|NM_118966.2| Arabidopsis thaliana unknown protein AT4G28260 mRNA, complete cds
          Length = 2322

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 ttctttcttctcagccattc 220
           ||||||||||||||||||||
Sbjct: 581 ttctttcttctcagccattc 562
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>gb|BT018270.1| Zea mays clone EL01T0203C06.c mRNA sequence
          Length = 1200

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 225 atgcactctttatggaacttgtgaaagcatggcaaa 260
           ||||||||||| || |||||||| | ||||||||||
Sbjct: 455 atgcactctttgtgaaacttgtgcatgcatggcaaa 420
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>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence
          Length = 226256

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   aagacctcaaacccaaagtt 494
             ||||||||||||||||||||
Sbjct: 29003 aagacctcaaacccaaagtt 29022
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>emb|BX548040.19| Zebrafish DNA sequence from clone CH211-190L11 in linkage group 12,
             complete sequence
          Length = 147855

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   catcataatcatttaaatca 434
             ||||||||||||||||||||
Sbjct: 99359 catcataatcatttaaatca 99340
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>emb|AL357507.9| Human DNA sequence from clone RP11-694J20 on chromosome 6 Contains a
             CpG island, complete sequence
          Length = 178828

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   gcacaaggctcttcagtgct 322
             ||||||||||||||||||||
Sbjct: 33210 gcacaaggctcttcagtgct 33229
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 329     ctgaaatactgactgaggcaagtt 352
               |||||||| |||||||||||||||
Sbjct: 1070592 ctgaaatattgactgaggcaagtt 1070615
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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 419     ataatcatttaaatcaatat 438
               ||||||||||||||||||||
Sbjct: 1171187 ataatcatttaaatcaatat 1171206
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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    ttctttcttctcagccattc 220
              ||||||||||||||||||||
Sbjct: 120548 ttctttcttctcagccattc 120529
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>gb|AY136412.1| Arabidopsis thaliana putative protein (At4g28260) mRNA, complete
           cds
          Length = 1753

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 ttctttcttctcagccattc 220
           ||||||||||||||||||||
Sbjct: 581 ttctttcttctcagccattc 562
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>gb|AC116357.2| Homo sapiens chromosome 5 clone RP11-668G8, complete sequence
          Length = 166827

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   tccaaaagatggattttcca 294
             ||||||||||||||||||||
Sbjct: 62878 tccaaaagatggattttcca 62859
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>emb|BX296539.5| Zebrafish DNA sequence from clone DKEYP-13E2 in linkage group 15,
              complete sequence
          Length = 135623

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    tgactgaaatactgactgag 345
              ||||||||||||||||||||
Sbjct: 118159 tgactgaaatactgactgag 118178
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>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3,
             complete sequence
          Length = 158520

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   aatcatttaaatcaatatta 440
             ||||||||||||||||||||
Sbjct: 40379 aatcatttaaatcaatatta 40398
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>dbj|AP004950.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT42E10, TM0123,
             complete sequence
          Length = 79601

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   gaaaactaaaactgcatttg 160
             ||||||||||||||||||||
Sbjct: 10771 gaaaactaaaactgcatttg 10790
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>emb|AJ271911.1|MMU271911 Mus musculus TSC1 gene for hamartin
          Length = 50470

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   aagttattgatctgactttc 367
             ||||||||||||||||||||
Sbjct: 41258 aagttattgatctgactttc 41239
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>emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on chromosome 2, complete
              sequence
          Length = 207372

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    aagttattgatctgactttc 367
              ||||||||||||||||||||
Sbjct: 111777 aagttattgatctgactttc 111758
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>gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 109440

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 419    ataatcatttaaatcaatattagg 442
              ||||||||||| ||||||||||||
Sbjct: 104272 ataatcatttatatcaatattagg 104249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,616,534
Number of Sequences: 3902068
Number of extensions: 5616534
Number of successful extensions: 123802
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123689
Number of HSP's gapped (non-prelim): 110
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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