ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20d18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HIS8_LISIN (Q92A83) Histidinol-phosphate aminotransferase (EC 2.... 33 0.71
2HIS8_LISMO (Q8Y5X8) Histidinol-phosphate aminotransferase (EC 2.... 31 2.7
3PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase... 31 3.5
4AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein 31 3.5
5HIS8_LISMF (Q71Y90) Histidinol-phosphate aminotransferase (EC 2.... 30 7.9
6VGLG_ORSVW (Q86695) Major surface glycoprotein G (Attachment gly... 30 7.9

>HIS8_LISIN (Q92A83) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 360

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 317 GELTSLRKNISDFYKVSELRVLCLVDCHNLLSLMARVSLD 436
           G  +SLRK ++DFY++ E  ++       L+ L+ RV LD
Sbjct: 64  GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLD 103



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>HIS8_LISMO (Q8Y5X8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 360

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 317 GELTSLRKNISDFYKVSELRVLCLVDCHNLLSLMARVSLD 436
           G  +SLRK +++FY++ E  ++       L+ L+ RV LD
Sbjct: 64  GWASSLRKEVTNFYQLEEEELIFTAGVDELIELLTRVLLD 103



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>PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A)
           (CGI-PDE A)
          Length = 1141

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 105 SKWTTC*ANDGVTVLKP-PNRMQPATKHAVHHHSADKQKLVLPRNMKLPVRGPIYKTEAQ 281
           S WTT  +  G+  L+P P R   +   ++  H A     V P +   PV   + K+ + 
Sbjct: 436 STWTTTTSATGLPTLEPAPVRRDRSA--SIKPHEAPSPSAVNPDSWNAPVLMTLTKSRSF 493

Query: 282 THYYSTSSARH 314
           T  Y+ S+A H
Sbjct: 494 TSSYAVSAANH 504



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>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein|
          Length = 1259

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 156 PNRMQPATKHAVHHHSADKQKLVLPRNMKLPVRGPIYKTEAQTHY 290
           P + QPA  H  HH SA    L LP +  L    P  +  A +H+
Sbjct: 412 PAKTQPAPPHISHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHH 456



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>HIS8_LISMF (Q71Y90) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 360

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 317 GELTSLRKNISDFYKVSELRVLCLVDCHNLLSLMARVSLD 436
           G  +SLR  ++DFY++ E  ++       L+ L+ RV LD
Sbjct: 64  GWASSLRTVVADFYQLEEEELIFTAGVDELIELLTRVLLD 103



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>VGLG_ORSVW (Q86695) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 263

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 150 KPPNRMQPATKHAVHHHSADKQKLVLPRNMKLPVRGPIYKTEAQTHYYSTSSARH 314
           KP    +P TK + HH ++ + KL +  NM  P  G I   +   +  +  + RH
Sbjct: 207 KPMTTKKP-TKTSTHHRTSLRNKLYIKTNMTTPPHGLISTAKHNKNQSTVQNPRH 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,655,214
Number of Sequences: 219361
Number of extensions: 1557004
Number of successful extensions: 4364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4364
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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