>UBXD1_HUMAN (Q9BZV1) UBX domain-containing protein 1|
          Length = 441

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = -3

Query: 435 NKEEDAKVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASLGGI-EFLELCGF 259
           NK++D +VK    T+  Y+ N+  +P+EEK+RKI+L N  FQER+  L G  EF E  GF
Sbjct: 165 NKDQD-RVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGF 223

Query: 258 EKPEGEEILFLARDKVD 208
           +K     +L  A+D+ D
Sbjct: 224 QK-----VLLPAQDQED 235

>UBXD1_MOUSE (Q99PL6) UBX domain-containing protein 1|
          Length = 442

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
 Frame = -3

Query: 435 NKEEDAKVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASL-GGIEFLELCGF 259
           N++ D +VK    T+  Y+ N+  +P+EEK++KI+L N  FQER+  L G  EF E  GF
Sbjct: 165 NRDRD-RVKLGVDTIAKYLDNIHLHPEEEKYQKIKLQNKVFQERINCLEGSHEFFEAIGF 223

Query: 258 EK-------PEGEEILFLARDKVDKAVLNVAGAELNSAITNPFFGVL*NREIPVVAP 109
           +K        EG+E  ++  +       N+A  +       P    L +R++ V  P
Sbjct: 224 KKVTLPVPDQEGQEEFYVLGEDARAQPQNLARHKQQLLDAEPVRATL-DRQLRVFRP 279

>RS15A_SCHPO (O94715) 40S ribosomal protein S15-A|
          Length = 153

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 80  HSRFRRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 217
           H+R RRR+ +G     SRF R  +K    A L+  PAT +T L  +
Sbjct: 46  HARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNM 91

>RS15B_SCHPO (Q9UTQ6) 40S ribosomal protein S15-B|
          Length = 154

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 80  HSRFRRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 217
           H+R RRR+ +G     SRF R  +K    A L+  PAT +T L  +
Sbjct: 47  HARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNM 92

>DNL1_XENLA (P51892) DNA ligase 1 (EC 6.5.1.1) (DNA ligase I)|
           (Polydeoxyribonucleotide synthase [ATP] 1)
          Length = 1070

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 567 QKPQLHPSQAHHKPVEEKKSAFLPVRPATKAERMRDCL--RNIKQQNKEEDAKVKR 406
           ++PQ     A  KPV++  S F P +PA K E+  + L  +N+ + + EE  K K+
Sbjct: 346 EEPQKKADSA--KPVKQISSFFAPRKPAIKTEKREENLNEKNVTETSLEESPKPKK 399

>YEC3_YEAST (P39992) Hypothetical 78.3 kDa protein in RIP1-GEA2 intergenic|
           region
          Length = 682

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = -3

Query: 474 ERMRDCLRNIKQQN---KEEDAKVKRAF 400
           ERM DCL+NIK+     K+E  KVK AF
Sbjct: 479 ERMEDCLKNIKETRLSLKDEKEKVKDAF 506

>CAIC_PROSL (Q8GB18) Probable crotonobetaine/carnitine-CoA ligase (EC 6.2.1.-)|
          Length = 518

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 528 PVEEKKSAFLPVRPATKAERMRDCLRNIKQQNKEEDAKVKRAFQTLLTYIG 376
           P+  + S   PV P  K  ++R+ +  +   +KE+DA ++R    LLT  G
Sbjct: 271 PMMMRTSMAQPVSPDEKQHKLREVMSYLNLADKEKDASIERLNVRLLTSHG 321

>RNY1_DEBHA (Q6BHB1) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase|
           T2-like)
          Length = 403

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 GYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQ 228
           GY GNF+   D+E + GDG+       I DG  +  P Q
Sbjct: 361 GYGGNFAWCLDTEHKHGDGKTAQTPIKISDGQCDSFPVQ 399

>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)|
          Length = 2616

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = +1

Query: 16   SGVSIXQXCTILQFNSTTVRHTFPIQTTDFQRGYNGNFSVLE----------DSEERIGD 165
            +GV   Q C     + + V H   ++    Q G     S+LE          DS+E +GD
Sbjct: 1083 AGVHFAQACHGRNSHDSLVDHVAYVKCPPMQCGLPSKSSMLEHSKRVRRAVSDSKEIVGD 1142

Query: 166  GRVELGSSY 192
            GR+ +G SY
Sbjct: 1143 GRI-VGGSY 1150

>TRM10_ASPFU (Q4WXA1) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31) (tRNA|
           methyltransferase 10)
          Length = 396

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/93 (22%), Positives = 41/93 (44%)
 Frame = -3

Query: 672 IEKA*ERGGEESQRKDSPETGRGQG*T*KGNLDCRQKPQLHPSQAHHKPVEEKKSAFLPV 493
           +++A +  G+++  KD P T           L   Q  +L   + H + + E++      
Sbjct: 58  VKQACDEEGQDAHGKDGPPT-----------LSKNQLKKLKRKE-HWEAMREQRKVKRKE 105

Query: 492 RPATKAERMRDCLRNIKQQNKEEDAKVKRAFQT 394
           +   K ER R  L   KQ+  E   + ++AF++
Sbjct: 106 KLVAKRERRRAALEQAKQEGAEATEETRKAFES 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,260,729
Number of Sequences: 219361
Number of extensions: 2041036
Number of successful extensions: 6071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6066
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)