| Clone Name | rbags20d08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465873.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1580 Score = 414 bits (209), Expect = e-112 Identities = 480/565 (84%), Gaps = 9/565 (1%) Strand = Plus / Minus Query: 135 tttagaggactccgaagaaaggattggtgatggccgagttgagctcggctccagctacat 194 |||| |||||||| ||||||||||| ||||| || || || |||||||||||||| | Sbjct: 1363 tttaaaggactccaaagaaaggattagtgatagcagaattcagctcggctccagcagtgt 1304 Query: 195 tcaggacggctttgtcaaccttgtcccttgccagaaacaagatctcttcaccttccggtt 254 |||||||||| |||||||||||||||||||||| ||||||| ||| | ||||| ||| Sbjct: 1303 tcaggacggccttgtcaaccttgtcccttgccaagaacaagaactcgttgccttcaagtt 1244 Query: 255 tctcgaacccgcacagctcaagaaactctatgcctcca---aggctcgcaactctctcct 311 |||| || || || |||| |||||||||||||||||| || | |||| ||||||| Sbjct: 1243 tctcaaatccacagagctggagaaactctatgcctccatgcagattgccaaccctctcct 1184 Query: 312 ggaatgtagcattggtaagtctgatctttctgaatttctcctcgtcggggtttttaacca 371 | |||||||| ||||| ||||||||||| ||||||||||||||||| || |||||| | | Sbjct: 1183 gaaatgtagcgttggtcagtctgatcttcctgaatttctcctcgtcaggatttttagcta 1124 Query: 372 cgtttccgatgtaggtaaggagtgtttggaaagccctctttactttagcatcctcctcct 431 | || || |||||||||||||||||||| ||||||||||| ||||||||||| || |||| Sbjct: 1123 cattgccaatgtaggtaaggagtgtttgaaaagccctcttcactttagcatcgtcatcct 1064 Query: 432 tgttctgctgcttaatatttcgtaagcaatccctcatccgctctgcctttgtggctggtc 491 ||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| | Sbjct: 1063 tgttctgctgcttaagatttcttaagcaatccctcatgcgctcggcctttgtggctggcc 1004 Query: 492 tgacaggtaaaaatgcactcttcttctcttcaacaggcttgtggtgcgcttggcttggat 551 |||||||| ||||| ||||||||||||||||| || ||||||||||||| || | Sbjct: 1003 tgacaggt---aatgccctcttcttctcttcaaccgg-aggtggtgcgcttggtttagga 948 Query: 552 gcagctggggcttctgccggcaatccaagtttcctttctacgttcagccttgtcctcttc 611 |||||||| |||| | |||||||||||||||| |||| | |||||||||||||||||| Sbjct: 947 gcagctggatcttccgggggcaatccaagtttcc-ttctcctttcagccttgtcctcttc 889 Query: 612 cagtttctggcgaatcttttctctggctctcttctcctcctctttctcaagccttctcaa 671 ||||||||| || || |||||||| ||||| |||||||| ||||||||||| |||| || Sbjct: 888 cagtttctgacggattttttctctagctcttttctcctcttctttctcaagtcttcgcag 829 Query: 672 ttctatggatgcgtttcctttcatt 696 |||||| ||||||||||||||||| Sbjct: 828 ttctat-catgcgtttcctttcatt 805
>dbj|AK102956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115G09, full insert sequence Length = 1580 Score = 414 bits (209), Expect = e-112 Identities = 480/565 (84%), Gaps = 9/565 (1%) Strand = Plus / Minus Query: 135 tttagaggactccgaagaaaggattggtgatggccgagttgagctcggctccagctacat 194 |||| |||||||| ||||||||||| ||||| || || || |||||||||||||| | Sbjct: 1363 tttaaaggactccaaagaaaggattagtgatagcagaattcagctcggctccagcagtgt 1304 Query: 195 tcaggacggctttgtcaaccttgtcccttgccagaaacaagatctcttcaccttccggtt 254 |||||||||| |||||||||||||||||||||| ||||||| ||| | ||||| ||| Sbjct: 1303 tcaggacggccttgtcaaccttgtcccttgccaagaacaagaactcgttgccttcaagtt 1244 Query: 255 tctcgaacccgcacagctcaagaaactctatgcctcca---aggctcgcaactctctcct 311 |||| || || || |||| |||||||||||||||||| || | |||| ||||||| Sbjct: 1243 tctcaaatccacagagctggagaaactctatgcctccatgcagattgccaaccctctcct 1184 Query: 312 ggaatgtagcattggtaagtctgatctttctgaatttctcctcgtcggggtttttaacca 371 | |||||||| ||||| ||||||||||| ||||||||||||||||| || |||||| | | Sbjct: 1183 gaaatgtagcgttggtcagtctgatcttcctgaatttctcctcgtcaggatttttagcta 1124 Query: 372 cgtttccgatgtaggtaaggagtgtttggaaagccctctttactttagcatcctcctcct 431 | || || |||||||||||||||||||| ||||||||||| ||||||||||| || |||| Sbjct: 1123 cattgccaatgtaggtaaggagtgtttgaaaagccctcttcactttagcatcgtcatcct 1064 Query: 432 tgttctgctgcttaatatttcgtaagcaatccctcatccgctctgcctttgtggctggtc 491 ||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| | Sbjct: 1063 tgttctgctgcttaagatttcttaagcaatccctcatgcgctcggcctttgtggctggcc 1004 Query: 492 tgacaggtaaaaatgcactcttcttctcttcaacaggcttgtggtgcgcttggcttggat 551 |||||||| ||||| ||||||||||||||||| || ||||||||||||| || | Sbjct: 1003 tgacaggt---aatgccctcttcttctcttcaaccgg-aggtggtgcgcttggtttagga 948 Query: 552 gcagctggggcttctgccggcaatccaagtttcctttctacgttcagccttgtcctcttc 611 |||||||| |||| | |||||||||||||||| |||| | |||||||||||||||||| Sbjct: 947 gcagctggatcttccgggggcaatccaagtttcc-ttctcctttcagccttgtcctcttc 889 Query: 612 cagtttctggcgaatcttttctctggctctcttctcctcctctttctcaagccttctcaa 671 ||||||||| || || |||||||| ||||| |||||||| ||||||||||| |||| || Sbjct: 888 cagtttctgacggattttttctctagctcttttctcctcttctttctcaagtcttcgcag 829 Query: 672 ttctatggatgcgtttcctttcatt 696 |||||| ||||||||||||||||| Sbjct: 828 ttctat-catgcgtttcctttcatt 805
>dbj|AK062243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E12, full insert sequence Length = 940 Score = 414 bits (209), Expect = e-112 Identities = 480/565 (84%), Gaps = 9/565 (1%) Strand = Plus / Minus Query: 135 tttagaggactccgaagaaaggattggtgatggccgagttgagctcggctccagctacat 194 |||| |||||||| ||||||||||| ||||| || || || |||||||||||||| | Sbjct: 737 tttaaaggactccaaagaaaggattagtgatagcagaattcagctcggctccagcagtgt 678 Query: 195 tcaggacggctttgtcaaccttgtcccttgccagaaacaagatctcttcaccttccggtt 254 |||||||||| |||||||||||||||||||||| ||||||| ||| | ||||| ||| Sbjct: 677 tcaggacggccttgtcaaccttgtcccttgccaagaacaagaactcgttgccttcaagtt 618 Query: 255 tctcgaacccgcacagctcaagaaactctatgcctcca---aggctcgcaactctctcct 311 |||| || || || |||| |||||||||||||||||| || | |||| ||||||| Sbjct: 617 tctcaaatccacagagctggagaaactctatgcctccatgcagattgccaaccctctcct 558 Query: 312 ggaatgtagcattggtaagtctgatctttctgaatttctcctcgtcggggtttttaacca 371 | |||||||| ||||| ||||||||||| ||||||||||||||||| || |||||| | | Sbjct: 557 gaaatgtagcgttggtcagtctgatcttcctgaatttctcctcgtcaggatttttagcta 498 Query: 372 cgtttccgatgtaggtaaggagtgtttggaaagccctctttactttagcatcctcctcct 431 | || || |||||||||||||||||||| ||||||||||| ||||||||||| || |||| Sbjct: 497 cattgccaatgtaggtaaggagtgtttgaaaagccctcttcactttagcatcgtcatcct 438 Query: 432 tgttctgctgcttaatatttcgtaagcaatccctcatccgctctgcctttgtggctggtc 491 ||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| | Sbjct: 437 tgttctgctgcttaagatttcttaagcaatccctcatgcgctcggcctttgtggctggcc 378 Query: 492 tgacaggtaaaaatgcactcttcttctcttcaacaggcttgtggtgcgcttggcttggat 551 |||||||| ||||| ||||||||||||||||| || ||||||||||||| || | Sbjct: 377 tgacaggt---aatgccctcttcttctcttcaaccgg-aggtggtgcgcttggtttagga 322 Query: 552 gcagctggggcttctgccggcaatccaagtttcctttctacgttcagccttgtcctcttc 611 |||||||| |||| | |||||||||||||||| |||| | |||||||||||||||||| Sbjct: 321 gcagctggatcttccgggggcaatccaagtttcc-ttctcctttcagccttgtcctcttc 263 Query: 612 cagtttctggcgaatcttttctctggctctcttctcctcctctttctcaagccttctcaa 671 ||||||||| || || |||||||| ||||| |||||||| ||||||||||| |||| || Sbjct: 262 cagtttctgacggattttttctctagctcttttctcctcttctttctcaagtcttcgcag 203 Query: 672 ttctatggatgcgtttcctttcatt 696 |||||| ||||||||||||||||| Sbjct: 202 ttctat-catgcgtttcctttcatt 179
>gb|AY107699.1| Zea mays PCO077134 mRNA sequence Length = 916 Score = 270 bits (136), Expect = 6e-69 Identities = 336/398 (84%), Gaps = 6/398 (1%) Strand = Plus / Minus Query: 300 caactctctcctggaatgtagcattggtaagtctgatctttctgaatttctcctcgtcgg 359 |||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||| | Sbjct: 560 caaccctctcctgaaatgtagcattggttagcctgatctttctaaatttctcctcgtcag 501 Query: 360 ggtttttaaccacgtttccgatgtaggtaaggagtgtttggaaagccctctttactttag 419 | |||||| | |||||||| ||||| |||||||||||||| || |||||||| ||||| | Sbjct: 500 gatttttagcaacgtttccaatgtaagtaaggagtgtttgaaatgccctcttcactttgg 441 Query: 420 catcctcctccttgttctgctgcttaatatttcgtaagcaatccctcatccgctctgcct 479 |||| || ||||||||||| ||||||| ||||| || |||||||||||||| ||| |||| Sbjct: 440 catcatcatccttgttctgttgcttaagatttcttaggcaatccctcatcctctcagcct 381 Query: 480 ttgtggctggtctgacaggtaaaaatgcactcttcttctcttcaacaggcttgtggtgcg 539 |||| ||||| | |||||| |||||||||||||||||||||||||| | ||||| Sbjct: 380 ttgtagctggccggacagg---caatgcactcttcttctcttcaacagg-aagcggtgca 325 Query: 540 cttggcttggatgcagctggggcttctgccggcaatccaagtttcctttctacgttcagc 599 ||||| |||| || |||||| |||||| |||| ||| ||||||| |||| | |||||| Sbjct: 324 cttggtttggcagctgctgggtcttctggtggcagtcctagtttcc-ttctcctttcagc 266 Query: 600 cttgtcctcttccagtttctggcgaatcttttctctggctctcttctcctcctctttctc 659 ||| || ||||| | |||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 265 cttatcttcttctaacttctggcggattttttctctagctcttttctcctcctctttctc 206 Query: 660 aagccttctcaattctatggatgcgtttcctttcattt 697 ||| ||| || |||||| |||||||||||||||||| Sbjct: 205 aagttttcgcagttctat-catgcgtttcctttcattt 169 Score = 81.8 bits (41), Expect = 3e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 140 aggactccgaagaaaggattggtgatggccgagttgagctcggctccagctacattcagg 199 ||||| || |||||||||||||||||||| || || ||||||||||||||| |||||| Sbjct: 723 aggaccccaaagaaaggattggtgatggcagaattcagctcggctccagctgtgttcagg 664 Query: 200 acggctttgtcaaccttgtcccttgccagaaacaagatctcttcaccttccggtttctcg 259 | || ||||| || || |||||||||| ||||||| ||| | ||||| ||||||| Sbjct: 663 atagccttgtcgactttttcccttgccaaaaacaagtactcgttcccttcaagtttctca 604 Query: 260 aacccgcacagctcaagaaactctatgcc 288 || ||||| ||||| || ||||||||||| Sbjct: 603 aatccgcagagctccaggaactctatgcc 575
>gb|AY110441.1| Zea mays CL14665_2 mRNA sequence Length = 676 Score = 141 bits (71), Expect = 4e-30 Identities = 168/202 (83%) Strand = Plus / Plus Query: 300 caactctctcctggaatgtagcattggtaagtctgatctttctgaatttctcctcgtcgg 359 |||| |||||||| ||||| ||||| || || ||||||||||| |||||||||||||| | Sbjct: 472 caaccctctcctgaaatgttgcattcgtcagcctgatctttctaaatttctcctcgtcag 531 Query: 360 ggtttttaaccacgtttccgatgtaggtaaggagtgtttggaaagccctctttactttag 419 | | | |||||||| ||||| ||||| ||||||||||| |||||||| ||||| | Sbjct: 532 gannnnnagcaacgtttccaatgtaagtaagcagtgtttggaatgccctcttcactttgg 591 Query: 420 catcctcctccttgttctgctgcttaatatttcgtaagcaatccctcatccgctctgcct 479 |||| || ||||| ||||| ||||| | ||||| || || |||||||||| |||||||| Sbjct: 592 catcatcatccttattctgttgcttgagatttcttagacagtccctcatcctctctgcct 651 Query: 480 ttgtggctggtctgacaggtaa 501 |||||||||| ||||||||||| Sbjct: 652 ttgtggctggcctgacaggtaa 673 Score = 77.8 bits (39), Expect = 5e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 140 aggactccgaagaaaggattggtgatggccgagttgagctcggctccagct 190 ||||||||||||||||||||||||||||| || || ||||||||||||||| Sbjct: 309 aggactccgaagaaaggattggtgatggcagaattcagctcggctccagct 359
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 125 bits (63), Expect = 2e-25 Identities = 102/115 (88%) Strand = Plus / Minus Query: 309 cctggaatgtagcattggtaagtctgatctttctgaatttctcctcgtcggggtttttaa 368 |||| |||||||| ||||| ||||||||||| ||||||||||||||||| || |||||| Sbjct: 18035456 cctgaaatgtagcgttggtcagtctgatcttcctgaatttctcctcgtcaggatttttag 18035397 Query: 369 ccacgtttccgatgtaggtaaggagtgtttggaaagccctctttactttagcatc 423 | || || || |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 18035396 ctacattgccaatgtaggtaaggagtgtttgaaaagccctcttcactttagcatc 18035342 Score = 107 bits (54), Expect = 5e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 135 tttagaggactccgaagaaaggattggtgatggccgagttgagctcggctccagctacat 194 |||| |||||||| ||||||||||| ||||| || || || |||||||||||||| | Sbjct: 18035731 tttaaaggactccaaagaaaggattagtgatagcagaattcagctcggctccagcagtgt 18035672 Query: 195 tcaggacggctttgtcaaccttgtcccttgccagaaacaagatctcttcaccttccggtt 254 |||||||||| |||||||||||||||||||||| ||||||| ||| | ||||| ||| Sbjct: 18035671 tcaggacggccttgtcaaccttgtcccttgccaagaacaagaactcgttgccttcaagtt 18035612 Query: 255 tctcgaacccgcacagctcaagaaactctatgcctcca 292 |||| || || || |||| |||||||||||||||||| Sbjct: 18035611 tctcaaatccacagagctggagaaactctatgcctcca 18035574 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 429 ccttgttctgctgcttaatatttcgtaagcaatccctcatccgctctgcctttgtggctg 488 |||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 18035087 ccttgttctgctgcttaagatttcttaagcaatccctcatgcgctcggcctttgtggctg 18035028 Query: 489 gtctgacaggtaa 501 | ||||||||||| Sbjct: 18035027 gcctgacaggtaa 18035015 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 599 ccttgtcctcttccagtttctggcgaatcttttctctggctctcttctcctcctctttct 658 |||||||||||||||||||||| || || |||||||| ||||| |||||||| ||||||| Sbjct: 18034394 ccttgtcctcttccagtttctgacggattttttctctagctcttttctcctcttctttct 18034335 Query: 659 caagccttctcaattctat 677 |||| |||| || |||||| Sbjct: 18034334 caagtcttcgcagttctat 18034316 Score = 42.1 bits (21), Expect = 2.5 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 511 cttcttctcttcaacaggcttgtggtgcgcttggcttggatgcagctggggcttctgccg 570 ||||||||||||||| || ||||||||||||| || | |||||||| |||| | | Sbjct: 18034638 cttcttctcttcaaccggag-gtggtgcgcttggtttaggagcagctggatcttccgggg 18034580 Query: 571 gcaatccaagtttcctt 587 ||||||||||||||||| Sbjct: 18034579 gcaatccaagtttcctt 18034563
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 125 bits (63), Expect = 2e-25 Identities = 102/115 (88%) Strand = Plus / Minus Query: 309 cctggaatgtagcattggtaagtctgatctttctgaatttctcctcgtcggggtttttaa 368 |||| |||||||| ||||| ||||||||||| ||||||||||||||||| || |||||| Sbjct: 97050 cctgaaatgtagcgttggtcagtctgatcttcctgaatttctcctcgtcaggatttttag 96991 Query: 369 ccacgtttccgatgtaggtaaggagtgtttggaaagccctctttactttagcatc 423 | || || || |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 96990 ctacattgccaatgtaggtaaggagtgtttgaaaagccctcttcactttagcatc 96936 Score = 107 bits (54), Expect = 5e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 135 tttagaggactccgaagaaaggattggtgatggccgagttgagctcggctccagctacat 194 |||| |||||||| ||||||||||| ||||| || || || |||||||||||||| | Sbjct: 97325 tttaaaggactccaaagaaaggattagtgatagcagaattcagctcggctccagcagtgt 97266 Query: 195 tcaggacggctttgtcaaccttgtcccttgccagaaacaagatctcttcaccttccggtt 254 |||||||||| |||||||||||||||||||||| ||||||| ||| | ||||| ||| Sbjct: 97265 tcaggacggccttgtcaaccttgtcccttgccaagaacaagaactcgttgccttcaagtt 97206 Query: 255 tctcgaacccgcacagctcaagaaactctatgcctcca 292 |||| || || || |||| |||||||||||||||||| Sbjct: 97205 tctcaaatccacagagctggagaaactctatgcctcca 97168 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 429 ccttgttctgctgcttaatatttcgtaagcaatccctcatccgctctgcctttgtggctg 488 |||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 96681 ccttgttctgctgcttaagatttcttaagcaatccctcatgcgctcggcctttgtggctg 96622 Query: 489 gtctgacaggtaa 501 | ||||||||||| Sbjct: 96621 gcctgacaggtaa 96609 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 599 ccttgtcctcttccagtttctggcgaatcttttctctggctctcttctcctcctctttct 658 |||||||||||||||||||||| || || |||||||| ||||| |||||||| ||||||| Sbjct: 95988 ccttgtcctcttccagtttctgacggattttttctctagctcttttctcctcttctttct 95929 Query: 659 caagccttctcaattctat 677 |||| |||| || |||||| Sbjct: 95928 caagtcttcgcagttctat 95910 Score = 42.1 bits (21), Expect = 2.5 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 511 cttcttctcttcaacaggcttgtggtgcgcttggcttggatgcagctggggcttctgccg 570 ||||||||||||||| || ||||||||||||| || | |||||||| |||| | | Sbjct: 96232 cttcttctcttcaaccggag-gtggtgcgcttggtttaggagcagctggatcttccgggg 96174 Query: 571 gcaatccaagtttcctt 587 ||||||||||||||||| Sbjct: 96173 gcaatccaagtttcctt 96157
>gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete sequence Length = 99811 Score = 75.8 bits (38), Expect = 2e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 599 ccttgtcctcttccagtttctggcgaatcttttctctggctctcttctcctcctcttt 656 ||||||||||||||| |||||| ||||| ||||| |||||||||||||| |||||||| Sbjct: 69110 ccttgtcctcttccaatttctgacgaattttttccctggctctcttctcttcctcttt 69053 Score = 44.1 bits (22), Expect = 0.63 Identities = 61/74 (82%) Strand = Plus / Minus Query: 207 tgtcaaccttgtcccttgccagaaacaagatctcttcaccttccggtttctcgaacccgc 266 |||| ||||||||||| || ||||| |||| ||| || | ||| |||||| ||||| | Sbjct: 71120 tgtccaccttgtccctagcaagaaaaaagaactcgtcgctttcaattttctcaaacccac 71061 Query: 267 acagctcaagaaac 280 |||||||||||||| Sbjct: 71060 acagctcaagaaac 71047
>gb|BT013338.1| Lycopersicon esculentum clone 135129R, mRNA sequence Length = 1636 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 464 ctcatccgctctgcctttgtggctggtctgacaggtaaaaa 504 |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1090 ctcatccgctctgcctttgtagctggtctgacaggcaaaaa 1050
>ref|XM_422572.1| PREDICTED: Gallus gallus similar to hypothetical protein 3000008H23 (LOC424750), mRNA Length = 1098 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 638 ctctcttctcctcctctttctca 660 ||||||||||||||||||||||| Sbjct: 911 ctctcttctcctcctctttctca 889
>ref|NM_118998.1| Arabidopsis thaliana RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7); protein binding AT4G28560 (RIC7) mRNA, complete cds Length = 1353 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 638 ctctcttctcctcctctttctc 659 |||||||||||||||||||||| Sbjct: 21 ctctcttctcctcctctttctc 42
>gb|AY628385.1| Mangifera indica clone LMMA13 microsatellite sequence Length = 488 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 263 ccgcacagctcaagaaactctatgcc 288 ||||||||||||| |||||||||||| Sbjct: 273 ccgcacagctcaataaactctatgcc 298
>gb|AC124367.4| Mus musculus BAC clone RP24-545D20 from chromosome 18, complete sequence Length = 169912 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 636 ggctctcttctcctcctctttc 657 |||||||||||||||||||||| Sbjct: 140614 ggctctcttctcctcctctttc 140593
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 638 ctctcttctcctcctctttctc 659 |||||||||||||||||||||| Sbjct: 38081 ctctcttctcctcctctttctc 38060
>gb|AF411809.1| Lycopersicon esculentum BAC clone FW2.2, complete sequence Length = 127892 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 639 tctcttctcctcctctttctcaagcc 664 |||||||||||||||||| ||||||| Sbjct: 94328 tctcttctcctcctctttttcaagcc 94303
>gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, complete sequence Length = 217343 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 634 ctggctctcttctcctcctctttctc 659 ||||| |||||||||||||||||||| Sbjct: 93790 ctggcactcttctcctcctctttctc 93765
>ref|NM_100363.2| Arabidopsis thaliana nucleic acid binding / zinc ion binding AT1G04850 mRNA, complete cds Length = 1521 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 398 tggaaagccctctttactttagcatcctcctccttgt 434 ||||| || ||||| ||||||||||| |||||||||| Sbjct: 1064 tggaacgctctcttcactttagcatcatcctccttgt 1028
>ref|XM_549560.2| PREDICTED: Canis familiaris similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP) (LOC477765), mRNA Length = 1219 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 629 tttctctggctctcttctcct 649 ||||||||||||||||||||| Sbjct: 919 tttctctggctctcttctcct 899
>gb|DQ483814.1| Gymnogyps californianus clone 237F microsatellite sequence Length = 852 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 atcctcctccttgttctgctg 441 ||||||||||||||||||||| Sbjct: 26 atcctcctccttgttctgctg 46
>emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060K6 on chromosome 20p12.1-13 Contains the RPS11P1 gene for ribosomal protein S11 pseudogene 1, complete sequence Length = 117349 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 caactctctcctggaatgtag 320 ||||||||||||||||||||| Sbjct: 5480 caactctctcctggaatgtag 5460
>gb|BT000147.1| Arabidopsis thaliana Unknown protein (At1g04850) mRNA, complete cds Length = 1356 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 398 tggaaagccctctttactttagcatcctcctccttgt 434 ||||| || ||||| ||||||||||| |||||||||| Sbjct: 977 tggaacgctctcttcactttagcatcatcctccttgt 941
>emb|AL772295.5| Zebrafish DNA sequence from clone CH211-14A17 in linkage group 2 Contains a novel gene for a protein similar to apoptotic chromatin condensation inducer in the nucleus (ACINUS), two novel genes, a novel gene for a protein with a short chain dehydrogenase domain, a novel homeodomain gene, two novel genes for proteins with a zona pellucida-like domain, a novel ubiquitin-like gene, a novel gene similar to AP1G2 (adaptor-related protein complex 1, gamma 2 subunit), a novel gene similar to SLC7A8 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 8), a novel gene similar to human and mouse SKB1 homolog (S. pombe), a gene for a novel proteasome, the psmb5 gene for proteasome (prosome, macropain) subunit, beta type, 5 and two CpG islands, complete sequence Length = 194351 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 tgttctgctgcttaatatttc 452 ||||||||||||||||||||| Sbjct: 31707 tgttctgctgcttaatatttc 31687
>emb|BX323462.11| Zebrafish DNA sequence from clone CH211-225F16 in linkage group 7, complete sequence Length = 85515 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 638 ctctcttctcctcctctttct 658 ||||||||||||||||||||| Sbjct: 33660 ctctcttctcctcctctttct 33680
>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence Length = 129518 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 600 cttgtcctcttccagtttctg 620 ||||||||||||||||||||| Sbjct: 101914 cttgtcctcttccagtttctg 101894 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 cttgtcctcttccagtttctg 620 ||||||||||||||||||||| Sbjct: 86808 cttgtcctcttccagtttctg 86828
>gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete sequence Length = 123526 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 600 cttgtcctcttccagtttctg 620 ||||||||||||||||||||| Sbjct: 59763 cttgtcctcttccagtttctg 59743 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 cttgtcctcttccagtttctg 620 ||||||||||||||||||||| Sbjct: 44657 cttgtcctcttccagtttctg 44677
>gb|AY062609.1| Arabidopsis thaliana Unknown protein (F13M7.16) mRNA, complete cds Length = 1412 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 398 tggaaagccctctttactttagcatcctcctccttgt 434 ||||| || ||||| ||||||||||| |||||||||| Sbjct: 1010 tggaacgctctcttcactttagcatcatcctccttgt 974
>ref|XM_394092.2| PREDICTED: Apis mellifera similar to Tubulin alpha-2 chain (Alpha-tubulin 2) (LOC410614), mRNA Length = 1723 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 637 gctctcttctcctcctctttc 657 ||||||||||||||||||||| Sbjct: 1433 gctctcttctcctcctctttc 1413
>emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 in linkage group 2, complete sequence Length = 170771 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 tgttctgctgcttaatatttc 452 ||||||||||||||||||||| Sbjct: 15597 tgttctgctgcttaatatttc 15617
>gb|AY088435.1| Arabidopsis thaliana clone 6672 mRNA, complete sequence Length = 1519 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 398 tggaaagccctctttactttagcatcctcctccttgt 434 ||||| || ||||| ||||||||||| |||||||||| Sbjct: 1064 tggaacgctctcttcactttagcatcatcctccttgt 1028
>emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in linkage group 18, complete sequence Length = 168745 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 638 ctctcttctcctcctctttct 658 ||||||||||||||||||||| Sbjct: 139152 ctctcttctcctcctctttct 139172
>emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, complete sequence Length = 205118 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 tgttctgctgcttaatatttc 452 ||||||||||||||||||||| Sbjct: 51650 tgttctgctgcttaatatttc 51670
>gb|AC159465.2| Pan troglodytes BAC clone CH251-325K10 from chromosome unknown, complete sequence Length = 174268 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 639 tctcttctcctcctctttctc 659 ||||||||||||||||||||| Sbjct: 104866 tctcttctcctcctctttctc 104846
>ref|NM_113096.1| Arabidopsis thaliana unknown protein AT3G22000 mRNA, complete cds Length = 822 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gtaaggagtgtttggaaagc 405 |||||||||||||||||||| Sbjct: 680 gtaaggagtgtttggaaagc 699
>ref|NM_179124.1| Arabidopsis thaliana oxidoreductase AT4G26965 transcript variant AT4G26965.1 mRNA, complete cds Length = 986 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 ctctggctctcttctcctcctctt 655 |||||||| ||||||||||||||| Sbjct: 385 ctctggctttcttctcctcctctt 362
>ref|NM_001036651.1| Arabidopsis thaliana oxidoreductase AT4G26965 transcript variant AT4G26965.2 mRNA, complete cds Length = 1000 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 ctctggctctcttctcctcctctt 655 |||||||| ||||||||||||||| Sbjct: 414 ctctggctttcttctcctcctctt 391
>ref|NM_118186.1| Arabidopsis thaliana unknown protein AT4G20680 mRNA, complete cds Length = 822 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gtaaggagtgtttggaaagc 405 |||||||||||||||||||| Sbjct: 680 gtaaggagtgtttggaaagc 699
>ref|XM_508892.1| PREDICTED: Pan troglodytes similar to formin binding protein 4 (LOC451706), mRNA Length = 477 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 167 cctccaaggctcgcaactct 148
>ref|XM_519178.1| PREDICTED: Pan troglodytes similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) (LOC463509), mRNA Length = 1196 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 630 ttctctggctctcttctcct 649 |||||||||||||||||||| Sbjct: 1102 ttctctggctctcttctcct 1083
>ref|XM_604802.2| PREDICTED: Bos taurus similar to Y50C1A.1 (LOC526431), partial mRNA Length = 2246 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 tcctcctccttgttctgctg 441 |||||||||||||||||||| Sbjct: 235 tcctcctccttgttctgctg 216
>gb|AY389901.1| Latimeria chalumnae eukaryotic translation elongation factor 1 gamma mRNA, partial cds Length = 1090 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 635 tggctctcttctcctcctctttct 658 ||||| |||||||||||||||||| Sbjct: 698 tggctttcttctcctcctctttct 675
>ref|NM_130880.1| Mus musculus OTU domain containing 7 (Otud7), mRNA Length = 3461 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 tcctcctccttgttctgctg 441 |||||||||||||||||||| Sbjct: 1175 tcctcctccttgttctgctg 1156
>gb|AC131720.2| Mus musculus BAC clone RP23-137I3 from chromosome 10, complete sequence Length = 207949 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 640 ctcttctcctcctctttctc 659 |||||||||||||||||||| Sbjct: 120170 ctcttctcctcctctttctc 120189
>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete sequence Length = 197272 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 640 ctcttctcctcctctttctc 659 |||||||||||||||||||| Sbjct: 66411 ctcttctcctcctctttctc 66392
>gb|DQ470939.1| Caliciopsis orientalis isolate AFTOL-ID 1911 RNA polymerase II subunit 2 (RPB2) gene, partial sequence Length = 877 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 ccttgtcctcttccagtttc 618 |||||||||||||||||||| Sbjct: 566 ccttgtcctcttccagtttc 547
>ref|NM_015308.1| Homo sapiens formin binding protein 4 (FNBP4), mRNA Length = 3995 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 1288 cctccaaggctcgcaactct 1269
>gb|AC060781.8| Mus musculus chromosome 19, clone RP23-196A19, complete sequence Length = 207702 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 639 tctcttctcctcctctttct 658 |||||||||||||||||||| Sbjct: 12725 tctcttctcctcctctttct 12744
>gb|AC162887.5| Mus musculus chromosome 19, clone RP23-414O6, complete sequence Length = 190704 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 639 tctcttctcctcctctttct 658 |||||||||||||||||||| Sbjct: 15530 tctcttctcctcctctttct 15511
>emb|Z68297.1|CEF11A10 Caenorhabditis elegans Cosmid F11A10, complete sequence Length = 19620 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 701 tcctccatcttcttggcttc 720 |||||||||||||||||||| Sbjct: 18677 tcctccatcttcttggcttc 18658
>gb|BC006557.2| Homo sapiens formin binding protein 4, mRNA (cDNA clone IMAGE:2823964), partial cds Length = 4014 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 1291 cctccaaggctcgcaactct 1272
>gb|AC107864.10| Mus musculus chromosome 10, clone RP23-388A14, complete sequence Length = 207955 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 639 tctcttctcctcctctttct 658 |||||||||||||||||||| Sbjct: 56603 tctcttctcctcctctttct 56584
>gb|DQ446684.1| Arabidopsis thaliana clone pENTR221-At3g22000 receptor-like protein kinase-like (At3g22000) mRNA, complete cds Length = 822 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gtaaggagtgtttggaaagc 405 |||||||||||||||||||| Sbjct: 680 gtaaggagtgtttggaaagc 699
>emb|AL512782.6| Human DNA sequence from clone RP11-464I4 on chromosome 13, complete sequence Length = 186266 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gtagtctggtgtttctataa 31 |||||||||||||||||||| Sbjct: 112495 gtagtctggtgtttctataa 112476
>emb|AL139237.30| Human DNA sequence from clone RP11-168P8 on chromosome 10 Contains the 3'end of a novel gene and parts of five novel genes, complete sequence Length = 120802 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 639 tctcttctcctcctctttct 658 |||||||||||||||||||| Sbjct: 52767 tctcttctcctcctctttct 52786
>emb|AL132866.29|HSJ994O24 Human DNA sequence from clone RP5-994O24 on chromosome 20 Contains part of the NFATC2 gene for cytoplasmic calcineurin-dependent (2) nuclear factor of activated T-cells and two CpG islands, complete sequence Length = 56415 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 tactttagcatcctcctcct 431 |||||||||||||||||||| Sbjct: 26589 tactttagcatcctcctcct 26570
>emb|AL109983.2|HSJ718P11 Human DNA sequence from clone RP4-718P11 on chromosome 20p12.1-12.3 Contains part of the SPTLC2L gene for serine palmitoyltransferase long chain base subunit 2-like (aminotransferase 2), complete sequence Length = 104913 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 415 tttagcatcctcctccttgttctg 438 ||||||||||||||||||| |||| Sbjct: 92774 tttagcatcctcctccttggtctg 92797
>gb|AY133755.1| Arabidopsis thaliana clone U18278 unknown protein (At4g26965) mRNA, complete cds Length = 586 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 ctctggctctcttctcctcctctt 655 |||||||| ||||||||||||||| Sbjct: 310 ctctggctttcttctcctcctctt 287
>gb|AY080614.1| Arabidopsis thaliana unknown protein (At4g26965) mRNA, complete cds Length = 1001 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 ctctggctctcttctcctcctctt 655 |||||||| ||||||||||||||| Sbjct: 384 ctctggctttcttctcctcctctt 361
>gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, complete sequence Length = 173513 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 tcttctcctcctctttctca 660 |||||||||||||||||||| Sbjct: 66334 tcttctcctcctctttctca 66315
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 ctctggctctcttctcctcctctt 655 |||||||| ||||||||||||||| Sbjct: 44827 ctctggctttcttctcctcctctt 44804
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 638 ctctcttctcctcctctttc 657 |||||||||||||||||||| Sbjct: 133196 ctctcttctcctcctctttc 133177
>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53 Length = 197568 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gtaaggagtgtttggaaagc 405 |||||||||||||||||||| Sbjct: 100310 gtaaggagtgtttggaaagc 100329
>emb|AL137480.1|HSM802205 Homo sapiens mRNA; cDNA DKFZp434M2023 (from clone DKFZp434M2023) Length = 4018 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 1256 cctccaaggctcgcaactct 1237
>emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, BAC clone F21C20 (ESSA project) Length = 69563 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gtaaggagtgtttggaaagc 405 |||||||||||||||||||| Sbjct: 4827 gtaaggagtgtttggaaagc 4846
>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project) Length = 128574 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 ctctggctctcttctcctcctctt 655 |||||||| ||||||||||||||| Sbjct: 88984 ctctggctttcttctcctcctctt 88961
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project) Length = 106702 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 638 ctctcttctcctcctctttc 657 |||||||||||||||||||| Sbjct: 84388 ctctcttctcctcctctttc 84369
>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7 Contains three CpG islands, complete sequence Length = 110786 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 686 ttcctttcatttaactcctc 705 |||||||||||||||||||| Sbjct: 46725 ttcctttcatttaactcctc 46706
>emb|AL929329.2| Zebrafish DNA sequence from clone BUSM1-44F21 in linkage group 7 Contains four CpG islands, complete sequence Length = 75828 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 686 ttcctttcatttaactcctc 705 |||||||||||||||||||| Sbjct: 47326 ttcctttcatttaactcctc 47345
>emb|BX640501.15| Zebrafish DNA sequence from clone CH211-117O11 in linkage group 10, complete sequence Length = 102141 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 703 ctccatcttcttggcttcaa 722 |||||||||||||||||||| Sbjct: 78094 ctccatcttcttggcttcaa 78113
>gb|BC037404.1| Homo sapiens formin binding protein 4, mRNA (cDNA clone MGC:36749 IMAGE:5140963), complete cds Length = 3995 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 1288 cctccaaggctcgcaactct 1269
>dbj|AK123898.1| Homo sapiens cDNA FLJ41904 fis, clone PEBLM2005632, moderately similar to Mus musculus formin binding protein 4 (Fnbp4) Length = 2721 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 1124 cctccaaggctcgcaactct 1105
>gb|AC148582.14| Gasterosteus aculeatus clone ch213-241e10, complete sequence Length = 209278 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 taagcaatccctcatccgctctgc 477 ||||||||||||||||||| |||| Sbjct: 13497 taagcaatccctcatccgccctgc 13520
>dbj|AK054636.1| Homo sapiens cDNA FLJ30074 fis, clone BGGI11000123, highly similar to Mus musculus formin binding protein 30 mRNA Length = 2796 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 1280 cctccaaggctcgcaactct 1261
>gb|AC011978.6| Homo sapiens chromosome 8, clone RP11-16E18, complete sequence Length = 159715 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 aggtaaaaatgcactcttct 515 |||||||||||||||||||| Sbjct: 94722 aggtaaaaatgcactcttct 94741
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gggaatttctcggttttaga 140 |||||||||||||||||||| Sbjct: 1721222 gggaatttctcggttttaga 1721203
>dbj|AK140630.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930063A10 product:unclassifiable, full insert sequence Length = 3689 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tctgatctttctgaatttct 350 |||||||||||||||||||| Sbjct: 113 tctgatctttctgaatttct 132
>gb|AC087098.8| Genomic sequence for Mus musculus, clone RP23-206M19, complete sequence Length = 198338 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 639 tctcttctcctcctctttct 658 |||||||||||||||||||| Sbjct: 57056 tctcttctcctcctctttct 57075
>ref|XM_690099.1| PREDICTED: Danio rerio similar to LAP2 protein (Erbb2-interacting protein) (Erbin) (Densin-180-like protein) (LOC566811), mRNA Length = 5011 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 703 ctccatcttcttggcttcaa 722 |||||||||||||||||||| Sbjct: 3996 ctccatcttcttggcttcaa 3977
>emb|BX323053.6| Zebrafish DNA sequence from clone DKEYP-53E9 in linkage group 12, complete sequence Length = 92153 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 641 tcttctcctcctctttctca 660 |||||||||||||||||||| Sbjct: 86107 tcttctcctcctctttctca 86126
>emb|BX537293.9| Zebrafish DNA sequence from clone DKEYP-40D11 in linkage group 5, complete sequence Length = 134768 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 640 ctcttctcctcctctttctc 659 |||||||||||||||||||| Sbjct: 8370 ctcttctcctcctctttctc 8389
>gb|AC157498.2| Pan troglodytes BAC clone CH251-412M6 from chromosome unknown, complete sequence Length = 159994 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 640 ctcttctcctcctctttctc 659 |||||||||||||||||||| Sbjct: 154412 ctcttctcctcctctttctc 154393
>emb|BX930310.2| Gallus gallus finished cDNA, clone ChEST590p4 Length = 956 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 tcttctcctcctctttctca 660 |||||||||||||||||||| Sbjct: 895 tcttctcctcctctttctca 876
>emb|BX929793.2| Gallus gallus finished cDNA, clone ChEST789p20 Length = 1088 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 tcttctcctcctctttctca 660 |||||||||||||||||||| Sbjct: 897 tcttctcctcctctttctca 878
>emb|CR385315.1| Gallus gallus finished cDNA, clone ChEST898f14 Length = 1096 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 tcttctcctcctctttctca 660 |||||||||||||||||||| Sbjct: 904 tcttctcctcctctttctca 885
>gb|AC022302.7|AC022302 Homo sapiens chromosome 15 clone CTD-2019H15 map 15q21.2, complete sequence Length = 176872 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 630 ttctctggctctcttctcct 649 |||||||||||||||||||| Sbjct: 112865 ttctctggctctcttctcct 112884
>ref|NM_069894.3| Caenorhabditis elegans F11A10.4 (F11A10.4) mRNA, complete cds Length = 5285 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 701 tcctccatcttcttggcttc 720 |||||||||||||||||||| Sbjct: 1313 tcctccatcttcttggcttc 1294
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 631 tctctggctctcttctcctcctct 654 ||||| |||||||||||||||||| Sbjct: 23175637 tctctcgctctcttctcctcctct 23175660
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 631 tctctggctctcttctcctcctct 654 ||||| |||||||||||||||||| Sbjct: 25094538 tctctcgctctcttctcctcctct 25094561
>gb|AC073436.62| Mus musculus strain C57BL/6J chromosome 2 clone rp23-50k8, complete sequence Length = 203901 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 aatgcactcttcttctcttc 522 |||||||||||||||||||| Sbjct: 21689 aatgcactcttcttctcttc 21708
>gb|AC074117.7| Homo sapiens BAC clone RP11-413M20 from 2, complete sequence Length = 195880 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 638 ctctcttctcctcctctttc 657 |||||||||||||||||||| Sbjct: 92230 ctctcttctcctcctctttc 92211
>gb|AC079602.15| Homo sapiens 12 BAC RP11-216P16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172008 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 tttctctggctctcttctcc 648 |||||||||||||||||||| Sbjct: 9080 tttctctggctctcttctcc 9099
>emb|BX936004.1| Gallus gallus finished cDNA, clone ChEST122a15 Length = 857 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 tcttctcctcctctttctca 660 |||||||||||||||||||| Sbjct: 796 tcttctcctcctctttctca 777
>gb|AC021443.27| Homo sapiens chromosome 11, clone RP11-692M12, complete sequence Length = 220283 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 96629 cctccaaggctcgcaactct 96648
>gb|AC020972.3|AC020972 Mus musculus chromosome 18 clone RP23-6P18, complete sequence Length = 218100 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 640 ctcttctcctcctctttctc 659 |||||||||||||||||||| Sbjct: 136979 ctcttctcctcctctttctc 136960
>gb|AC007843.6|AC007843 Arabidopsis thaliana chromosome I BAC F28G4 genomic sequence, complete sequence Length = 84974 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 636 ggctctcttctcctcctctttctc 659 |||||||| ||||||||||||||| Sbjct: 19005 ggctctctcctcctcctctttctc 19028
>gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168396 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 tttctctggctctcttctcc 648 |||||||||||||||||||| Sbjct: 67099 tttctctggctctcttctcc 67118
>gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana BAC F1L3 from chromosome I, complete sequence Length = 127968 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 636 ggctctcttctcctcctctttctc 659 |||||||| ||||||||||||||| Sbjct: 50353 ggctctctcctcctcctctttctc 50330
>dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0023I22 Length = 170029 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 631 tctctggctctcttctcctcctct 654 ||||| |||||||||||||||||| Sbjct: 146871 tctctcgctctcttctcctcctct 146894
>gb|AC096664.1| Homo sapiens BAC clone RP11-240J3 from 2, complete sequence Length = 83996 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 630 ttctctggctctcttctcct 649 |||||||||||||||||||| Sbjct: 71734 ttctctggctctcttctcct 71753
>dbj|AP007205.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03 Length = 142377 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 631 tctctggctctcttctcctcctct 654 ||||| |||||||||||||||||| Sbjct: 40724 tctctcgctctcttctcctcctct 40747
>dbj|AB028622.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24 Length = 82348 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gtaaggagtgtttggaaagc 405 |||||||||||||||||||| Sbjct: 43887 gtaaggagtgtttggaaagc 43906
>gb|AC153961.2| Mus musculus 10 BAC RP24-330I16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159792 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 639 tctcttctcctcctctttct 658 |||||||||||||||||||| Sbjct: 137534 tctcttctcctcctctttct 137515
>emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-716B8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175009 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aagaaaggattggtgatggc 168 |||||||||||||||||||| Sbjct: 139392 aagaaaggattggtgatggc 139411
>emb|Z98941.2|HS204E5 Human DNA sequence from clone XX-204E5 on chromosome 12, complete sequence Length = 129192 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 629 tttctctggctctcttctcc 648 |||||||||||||||||||| Sbjct: 90765 tttctctggctctcttctcc 90746
>emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-893D14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175368 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 640 ctcttctcctcctctttctc 659 |||||||||||||||||||| Sbjct: 22419 ctcttctcctcctctttctc 22438
>emb|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2510G9 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185132 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 687 tcctttcatttaactcctccatct 710 ||||| |||||||||||||||||| Sbjct: 87760 tccttgcatttaactcctccatct 87737
>dbj|AP001858.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-959F10, complete sequence Length = 210723 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 tcctcctccttgttctgctg 441 |||||||||||||||||||| Sbjct: 13367 tcctcctccttgttctgctg 13386
>emb|CR555293.8| Zebrafish DNA sequence from clone DKEY-23P14 in linkage group 11, complete sequence Length = 220631 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 682 gcgtttcctttcatttaactcctccatc 709 |||||||||||||||| |||||||||| Sbjct: 5385 gcgtttcctttcatttgcctcctccatc 5412
>gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163881 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 630 ttctctggctctcttctcct 649 |||||||||||||||||||| Sbjct: 119426 ttctctggctctcttctcct 119407
>emb|BX005136.8| Mouse DNA sequence from clone RP23-449C14 on chromosome 2, complete sequence Length = 178200 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 aatgcactcttcttctcttc 522 |||||||||||||||||||| Sbjct: 92463 aatgcactcttcttctcttc 92444
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 631 tctctggctctcttctcctcctct 654 ||||| |||||||||||||||||| Sbjct: 23103828 tctctcgctctcttctcctcctct 23103851
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 631 tctctggctctcttctcctcctct 654 ||||| |||||||||||||||||| Sbjct: 2760 tctctcgctctcttctcctcctct 2737
>emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in linkage group 12, complete sequence Length = 262809 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 641 tcttctcctcctctttctca 660 |||||||||||||||||||| Sbjct: 89821 tcttctcctcctctttctca 89840
>emb|AL929035.14| Mouse DNA sequence from clone RP23-234F15 on chromosome 2, complete sequence Length = 171936 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 640 ctcttctcctcctctttctc 659 |||||||||||||||||||| Sbjct: 54662 ctcttctcctcctctttctc 54681
>emb|AL844510.10| Mouse DNA sequence from clone RP23-54C21 on chromosome 2, complete sequence Length = 121507 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tctgatctttctgaatttct 350 |||||||||||||||||||| Sbjct: 42596 tctgatctttctgaatttct 42615
>emb|AJ430384.1|MMU430384 Mus musculus mRNA for Cezanne 2 protein Length = 3461 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 tcctcctccttgttctgctg 441 |||||||||||||||||||| Sbjct: 1175 tcctcctccttgttctgctg 1156
>dbj|AB023231.2| Homo sapiens mRNA for KIAA1014 protein, partial cds Length = 4145 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctccaaggctcgcaactct 306 |||||||||||||||||||| Sbjct: 1456 cctccaaggctcgcaactct 1437 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,163,560 Number of Sequences: 3902068 Number of extensions: 7163560 Number of successful extensions: 165707 Number of sequences better than 10.0: 116 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 165211 Number of HSP's gapped (non-prelim): 472 length of query: 722 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 699 effective length of database: 17,143,297,704 effective search space: 11983165095096 effective search space used: 11983165095096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)