>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 729

 Score =  235 bits (600), Expect(2) = 8e-63
 Identities = 106/123 (86%), Positives = 117/123 (95%)
 Frame = -1

Query: 638 KMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEW 459
           KMCSTDFNSR+YYVNIRKAML+GYFMQVAHLERTGHYLTVKDNQVVHLHPSNC+DHKPEW
Sbjct: 605 KMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW 664

Query: 458 VIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRERERAA 279
           VIYNEYVLTTRNFIRTVTDIRGEWL+D+A  YYDL+NFP+CEAKR LE+L+ KRERE+  
Sbjct: 665 VIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYYDLSNFPNCEAKRALEKLYKKREREKNE 724

Query: 278 SRN 270
           S+N
Sbjct: 725 SKN 727



 Score = 25.4 bits (54), Expect(2) = 8e-63
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -3

Query: 672 QLVRIMTRFNLK 637
           QLVRIM+RFNLK
Sbjct: 594 QLVRIMSRFNLK 605

>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
          Length = 795

 Score =  188 bits (478), Expect = 1e-47
 Identities = 82/107 (76%), Positives = 98/107 (91%)
 Frame = -1

Query: 629 STDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIY 450
           STDF SR+YY+NIRKA+++GYFMQVAHLERTGHYLTVKDNQVV LHPS  +DHKPEWV+Y
Sbjct: 677 STDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLY 736

Query: 449 NEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERL 309
           NE+VLTT+N+IRT TDI+ EWL+ IAPQYYD++NFP CEAKR L+R+
Sbjct: 737 NEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRI 783

>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
           (ATP-dependent RNA helicase #46)
          Length = 795

 Score =  188 bits (478), Expect = 1e-47
 Identities = 82/107 (76%), Positives = 98/107 (91%)
 Frame = -1

Query: 629 STDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIY 450
           STDF SR+YY+NIRKA+++GYFMQVAHLERTGHYLTVKDNQVV LHPS  +DHKPEWV+Y
Sbjct: 677 STDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLY 736

Query: 449 NEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERL 309
           NE+VLTT+N+IRT TDI+ EWL+ IAPQYYD++NFP CEAKR L+R+
Sbjct: 737 NEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRI 783

>DHX15_CAEEL (Q20875) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase F56D2.6 (EC 3.6.1.-)
          Length = 739

 Score =  174 bits (442), Expect = 2e-43
 Identities = 77/113 (68%), Positives = 96/113 (84%)
 Frame = -1

Query: 629 STDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIY 450
           STDF SR+YY+NIRKA+++G+FMQVAHLER+GHY+TVKDNQ+V+LHPS  +DHKPEW +Y
Sbjct: 621 STDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLHPSTVLDHKPEWALY 680

Query: 449 NEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRER 291
           NE+VLTT+NFIRTVTD+R EWL+ IAPQYYDL NFP  + KR L  +    +R
Sbjct: 681 NEFVLTTKNFIRTVTDVRPEWLLQIAPQYYDLDNFPDGDTKRKLTTVMQTLQR 733

>PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43|
           (EC 3.6.1.-) (Helicase JA1)
          Length = 767

 Score =  134 bits (336), Expect = 3e-31
 Identities = 66/115 (57%), Positives = 87/115 (75%), Gaps = 2/115 (1%)
 Frame = -1

Query: 629 STDFNSREYYVNIRKAMLSGYFMQVAHLERTGH--YLTVKDNQVVHLHPSNCMDHKPEWV 456
           +TD+ S +Y+ NIRKA+ SG+FMQVA  +R+G   Y+TVKDNQ V +HPS  + H  EWV
Sbjct: 636 TTDYESPKYFDNIRKALASGFFMQVAK-KRSGAKGYITVKDNQDVLIHPSTVLGHDAEWV 694

Query: 455 IYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRER 291
           IYNE+VLT++N+IRTVT +R EWLI+IAP YYDL+NF   + K  LER+  K +R
Sbjct: 695 IYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDR 749

>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase prp43 (EC 3.6.1.-)
          Length = 735

 Score =  131 bits (329), Expect = 2e-30
 Identities = 64/124 (51%), Positives = 90/124 (72%), Gaps = 2/124 (1%)
 Frame = -1

Query: 638 KMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTG-HYLTVKDNQVVHLHPSNCMDHKPE 462
           ++ ST F+ + YYVNIR+A++SG+FMQVA     G +Y+T+KDNQVV LHPS  +   PE
Sbjct: 611 ELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGLSVTPE 670

Query: 461 WVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFP-SCEAKRVLERLHNKRERER 285
           WV+YNE+VLTT++FIR VT IR EWLI++AP YYDL +F  + E K  L++++    R +
Sbjct: 671 WVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDFDNNKEVKSALQKVYQMAARSK 730

Query: 284 AASR 273
             +R
Sbjct: 731 KNAR 734

>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent
            RNA helicase #3)
          Length = 1041

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -1

Query: 602  YVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHP-SNCMDHKPEWVIYNEYVLTTR 426
            Y+ +RKA+ +GYF   A L R+G Y TVK  Q V +HP S+  + +P W++Y+E VLTT+
Sbjct: 936  YIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK 994

Query: 425  NFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRE 294
             F+R V +I   WL+++AP YY         AK++ +++   RE
Sbjct: 995  EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTRE 1038

>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent
            RNA helicase #3)
          Length = 1044

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -1

Query: 602  YVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHP-SNCMDHKPEWVIYNEYVLTTR 426
            Y+ +RKA+ +GYF   A L R+G Y TVK  Q V +HP S+  + +P W++Y+E VLTT+
Sbjct: 939  YIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK 997

Query: 425  NFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRE 294
             F+R V +I   WL+++AP YY         AK++ +++   RE
Sbjct: 998  EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTRE 1041

>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-4 (EC 3.6.1.-) (Sex determination protein mog-4)
            (Masculinization of germ line protein 4)
          Length = 1008

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
 Frame = -1

Query: 599  VNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM-DHKPEWVIYNEYVLTTRN 423
            + IRKA+ +GYF  V+ L+ TGHY TVK     H HP++C+ +  P WV+Y E V T++ 
Sbjct: 902  IKIRKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKE 961

Query: 422  FIRTVTDIRGEWLIDIAPQYY 360
            F+R +++I   WL+++AP YY
Sbjct: 962  FMREMSEIESGWLLEVAPHYY 982

>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)|
          Length = 1055

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
 Frame = -1

Query: 617  NSREYYVNIRKAMLSGYFMQVAHLERTGH-YLTVKDNQVVHLHPSNCM-DHKPEWVIYNE 444
            NS E    I+KA+ +GYF   A L+R+G  Y TVK NQ V++HPS+ + + KP+ +IY E
Sbjct: 951  NSSESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFE 1010

Query: 443  YVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTN 348
             VLTT+ + R +T+I+ EWL++I+P Y+   N
Sbjct: 1011 LVLTTKEYCRQITEIQPEWLLEISPHYFKPEN 1042

>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
            protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 83.2 bits (204), Expect = 7e-16
 Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
 Frame = -1

Query: 599  VNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM-DHKPEWVIYNEYVLTTRN 423
            V ++KA+ SG+F   A  +    Y T+ D QVV++HPS+ + + +PEWV+Y+E VLTT+ 
Sbjct: 1101 VRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE 1160

Query: 422  FIRTVTDIRGEWLIDIAPQYY---DLTNFPSCEAKRVLERLHNKRERERA 282
            ++R VT I   WL++ AP ++   D T     + ++ LE L+N+ E   A
Sbjct: 1161 YMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNA 1210

>DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 703

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
 Frame = -1

Query: 593 IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM--DHKPEWVIYNEYVLTTRNF 420
           + + ++SG+F   A    TG Y T++D+  +H+HP++ +  +  P WVIYNE + T++ +
Sbjct: 606 VLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYY 665

Query: 419 IRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKR 324
           +R VT I   WL+++AP +Y      S +AKR
Sbjct: 666 MRDVTAIESAWLLELAPHFYQQGTHLSLKAKR 697

>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            (EC 3.6.1.-)
          Length = 1168

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 34/105 (32%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
 Frame = -1

Query: 602  YVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM-DHKPEWVIYNEYVLTTR 426
            +  IRKA+ +G+F   A  +    Y T+ +NQ V++HPS+ +   +P+WVIY++ V+TT+
Sbjct: 1050 FTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTK 1109

Query: 425  NFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRER 291
             ++R VT I  +WL+++AP+++ +++      ++  ER+    +R
Sbjct: 1110 EYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDR 1154

>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-5 (EC 3.6.1.-) (Sex determination protein mog-5)
            (Masculinization of germ line protein 5)
          Length = 1200

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
 Frame = -1

Query: 593  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSN-CMDHKPEWVIYNEYVLTTRNFI 417
            ++KA+ SG+F   A  +    Y T+ D Q V++HPS+ C   +PEWV+Y+E V+TT+ ++
Sbjct: 1078 VQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKEYM 1137

Query: 416  RTVTDIRGEWLIDIAPQYY---DLTNFPSCEAKRVLERLHNK 300
            R VT I  +WL++ AP ++   D T   + +  + ++ L +K
Sbjct: 1138 REVTAIDPKWLVEFAPSFFKIGDSTKLSTFKRNQKIDPLFDK 1179

>DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 720

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = -1

Query: 593 IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM--DHKPEWVIYNEYVLTTRNF 420
           + + ++SG+F   A    TG Y T++D+  +H+HP++ +  +  P WVIYNE + T++ +
Sbjct: 606 VLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYY 665

Query: 419 IRTVTDIRGEWLIDIAPQYY 360
           +R VT I   WL+++AP +Y
Sbjct: 666 MRDVTAIESAWLLELAPHFY 685

>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box
            protein 38)
          Length = 1227

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 31/96 (32%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
 Frame = -1

Query: 632  CSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNC---MDHKPE 462
            C TD++       +RK + + YF Q A L+  G Y+ ++     HLHP++    M + P+
Sbjct: 1062 CGTDWDI------VRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPD 1115

Query: 461  WVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDL 354
            +++Y+E V+TT+ +++ VT + GEWL ++ P +Y +
Sbjct: 1116 YIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSV 1151

>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22|
            (EC 3.6.1.-)
          Length = 1145

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
 Frame = -1

Query: 593  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKP-EWVIYNEYVLTTRNFI 417
            IRK  +SG+FM  A  +    Y T+     V +HPS+ +  K  E+V+Y+  VLT+R ++
Sbjct: 1021 IRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSREYM 1080

Query: 416  RTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRV-LERLHNKRERERAASR 273
              VT I  +WL+++AP +Y   +  S   K+  +  LHNK  +++ + R
Sbjct: 1081 SQVTSIEPQWLLEVAPHFYKAGDAESQSRKKAKIIPLHNKFAKDQNSWR 1129

>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            C10F6.02c (EC 3.6.1.-)
          Length = 1168

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
 Frame = -1

Query: 593  IRKAMLSGYFMQVAHLE-RTGHYLTVKDNQVVHLHPSNCMDHKP-EWVIYNEYVLTTRNF 420
            I +A+ SGYF  VA  +   G Y T+ +N  V++HPS  +  K  EWVIY+E + T++ +
Sbjct: 1049 ILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEY 1108

Query: 419  IRTVTDIRGEWLIDIAPQYYDLTN 348
            + TV+ +  +WL+++AP ++   N
Sbjct: 1109 MHTVSTVNPKWLVEVAPTFFKFAN 1132

>PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC 3.6.1.-)|
          Length = 719

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = -1

Query: 596 NIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM-DHKPEWVIYNEYVLTTRNF 420
           N+  + LSGY    A L   G Y T+  NQ + +HPS+ +   K E ++Y+E V TT+++
Sbjct: 635 NLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSY 694

Query: 419 IRTVTDIRGEWLIDIAPQY 363
           +R V+ IR  WL  +AP Y
Sbjct: 695 VRGVSSIRSNWLNAVAPHY 713

>DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 homolog (EC|
           3.6.1.-)
          Length = 732

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
 Frame = -1

Query: 596 NIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHK---PEWVIYNEYVLTTR 426
           NIR+ +++G+F Q A    TG Y+TVK++   +++  + +  K   P+WVI+ E +   +
Sbjct: 627 NIRQCLVTGFFSQAAQYHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVM---Q 683

Query: 425 NFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRV 321
           + IR VT I  EWL ++AP YY+         KR+
Sbjct: 684 DSIRDVTVIEPEWLYELAPHYYEFGTEGELAEKRM 718

>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
 Frame = -1

Query: 650 DSTSKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDH 471
           D   KM     +SR    ++R+ +    FM  A L+  G Y T   +Q V +HPS+ + H
Sbjct: 601 DICLKMSMPIASSRGDVESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFH 660

Query: 470 -KPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYY 360
            KP  V+Y E + T + ++R +  I  +WL + AP+Y+
Sbjct: 661 CKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYF 698

>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 698

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = -1

Query: 638 KMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDH-KPE 462
           KM     +SR    ++R+ M    FM  A L+  G Y T   +Q V +HPS+ + H KP 
Sbjct: 596 KMSMPIMSSRGDMESVRRCMAHSLFMNTAELQTDGTYATTDTHQPVAIHPSSVLFHCKPA 655

Query: 461 WVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYY 360
            V+Y   + T + ++R +  +  EWL + AP Y+
Sbjct: 656 CVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDYF 689

>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-1 (EC 3.6.1.-) (Sex determination protein mog-1)
            (Masculinization of germ line protein 1)
          Length = 1131

 Score = 59.7 bits (143), Expect = 8e-09
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
 Frame = -1

Query: 593  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNC---MDHKPEWVIYNEYVLTTRN 423
            +RK + S YF   A L+  G Y+ V+      LHP++    M   P++V+Y+E ++T + 
Sbjct: 979  VRKCICSAYFHNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGFMPDYVVYHELIMTAKE 1038

Query: 422  FIRTVTDIRGEWLIDIAPQYYDL 354
            +++ VT +   WL ++ P +Y +
Sbjct: 1039 YMQCVTAVDAIWLAELGPMFYSI 1061

>PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16|
            (EC 3.6.1.-)
          Length = 1173

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
 Frame = -1

Query: 593  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM---DHKPEWVIYNEYVLTTRN 423
            +R+ + S YF Q A  +  G Y+ ++     HLH ++ +    + P++VIY+E VLT++ 
Sbjct: 1028 VRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKE 1087

Query: 422  FIRTVTDIRGEWLIDIAPQYYDL 354
            ++  VT +   WL +    YY +
Sbjct: 1088 YMNIVTSVDPYWLAEFGGVYYSV 1110

>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-)
          Length = 1071

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
 Frame = -1

Query: 593  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMD---HKPEWVIYNEYVLTTRN 423
            I+K + SG+  Q A +    +Y+ +K    V LHP++ +      P +V+Y+E ++T++ 
Sbjct: 903  IKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKE 962

Query: 422  FIRTVTDIRGEWLIDIAPQYYDL 354
            +I  VT +   WL++     YD+
Sbjct: 963  YICCVTSVDPFWLMEYGGLLYDI 985

>DHR2_YEAST (P36009) Probable ATP-dependent RNA helicase DHR2 (EC 3.6.1.-)|
           (DEAH box RNA helicase DHR2) (Helicase JA2)
          Length = 735

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = -1

Query: 665 SAS*PDSTSKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPS 486
           S S  D  SK    D    E    I K  L+G+    A       Y TV   + + +HPS
Sbjct: 624 SISEEDEESKKIGED---GELISKILKCFLTGFIKNTAIGMPDRSYRTVSTGEPISIHPS 680

Query: 485 NC--MDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDI 375
           +   M+     ++Y EYV TT+ + R V+ I   WL ++
Sbjct: 681 SMLFMNKSCPGIMYTEYVFTTKGYARNVSRIELSWLQEV 719

>PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2 (EC|
            3.6.1.-)
          Length = 876

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 13/94 (13%)
 Frame = -1

Query: 602  YVNIR--KAMLSGYFMQVAHLERTGHYLTVKDNQV--VHLHPSNCM--DHKPE------W 459
            Y+N R  +  +SG+ M +  L  TG+    + +    V +HP++ +  +HK +      +
Sbjct: 770  YINARITRCFISGFPMNIVQLGPTGYQTMGRSSGGLNVSVHPTSILFVNHKEKAQRPSKY 829

Query: 458  VIYNEYVLTTRNFIRTVTDI-RGEWLIDIAPQYY 360
            V+Y + +LT++ FIR    I + EWLID+ PQ +
Sbjct: 830  VLYQQLMLTSKEFIRDCLVIPKEEWLIDMVPQIF 863

>YK99_SCHPO (Q9HE06) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase C20H4.09 (EC 3.6.1.-) (DEAH-box helicase
           C20H4.09)
          Length = 647

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = -1

Query: 593 IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYNEYVLT-TRNFI 417
           I K +L G+   VAHL+  G Y T+   QV     S   + K  W++Y+  V + T+ F+
Sbjct: 569 ILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLDSSSVLHEKKTPWIMYSSAVESETQIFV 628

Query: 416 RTVTDIRGEWL 384
           + ++ I   WL
Sbjct: 629 KNISKIESFWL 639

>DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (EC 3.6.1.-) (DEAH|
            box protein 37)
          Length = 1157

 Score = 38.5 bits (88), Expect = 0.020
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -1

Query: 530  YLTVKDNQVVHLHPSNCMDHK-PEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQY 363
            Y T   +  V +HPS+ +  + PE+V+Y E V TT+ +++ V+ +  +W+  + P Y
Sbjct: 955  YKTPLLDDPVFIHPSSVLFKELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSY 1011

>KZ_DROME (O46072) Probable ATP-dependent RNA helicase kurz (EC 3.6.1.-)|
          Length = 1192

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = -1

Query: 497  LHPSNCMDHK-PEWVIYNE-YVL----TTRNFIRTVTDIRGEWLIDIAP 369
            LH S+ +  K PEWVIY E Y L    +T+ FIR +T I  EWL+   P
Sbjct: 991  LHVSSVLRQKAPEWVIYQEAYELQNGDSTKMFIRGITAIEPEWLLLYVP 1039

>HRPA_HAEIN (P45018) ATP-dependent RNA helicase hrpA homolog (EC 3.6.1.-)|
          Length = 1304

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = -1

Query: 644 TSKMCSTDFNSREY-YVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHK 468
           T +  S   NS +  Y  I  A+LSG    +   E          N    + P++ +  K
Sbjct: 610 TVREMSLPINSEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKK 669

Query: 467 -PEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIA 372
            P+WV+  E V T++ + R V +I  EW+  +A
Sbjct: 670 QPKWVMAAELVETSKLWGRMVAEIEPEWIEPLA 702

>MBRL_HUMAN (Q4ZIN3) Membralin|
          Length = 620

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 1   LLIHQNMETDT*LMYDNLHLLKQRENKHLFRNAVAGEHLTYV 126
           LL+ + +  D  LM     L +  ENK   RN V+GEH  +V
Sbjct: 254 LLLDEFLGYDDILMSSVKGLAENEENKGFLRNVVSGEHYRFV 295

>MBRL_MOUSE (Q8CIV2) Membralin|
          Length = 574

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 1   LLIHQNMETDT*LMYDNLHLLKQRENKHLFRNAVAGEHLTYV 126
           LL+ + +  D  LM     L +  ENK   RN V+GEH  +V
Sbjct: 245 LLLDEFLGYDDILMSSVKGLAENEENKGFLRNVVSGEHYRFV 286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,834,212
Number of Sequences: 219361
Number of extensions: 2352241
Number of successful extensions: 5266
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 5083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5243
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)