ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags20d06 |
|---|---|
| Clone Library Name | barley_pub |
>SPC21_RAT (Q9WTR7) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 88.2 bits (217), Expect = 2e-17 Identities = 47/125 (37%), Positives = 74/125 (59%) Frame = -3 Query: 726 SMXPGFKRGDILFLRMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFMNAKESAEVDILTK 547 SM P F RGD+LFL +E P+ + + + + + ++ K++ ++ LTK Sbjct: 67 SMEPAFHRGDLLFLTNFRED-PIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTK 125 Query: 546 GDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALGLLV 367 GDNN DDR LY GQ WL++ ++GRA G+LP+VG VTI+M + P KY L+ +G V Sbjct: 126 GDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYV 185 Query: 366 ITSKD 352 + ++ Sbjct: 186 LLKRE 190
>SPC21_PONPY (Q5RC30) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 87.8 bits (216), Expect = 3e-17 Identities = 47/125 (37%), Positives = 74/125 (59%) Frame = -3 Query: 726 SMXPGFKRGDILFLRMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFMNAKESAEVDILTK 547 SM P F RGD+LFL +E P+ + + + + + ++ K++ ++ LTK Sbjct: 67 SMEPAFHRGDLLFLTNFRED-PIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTK 125 Query: 546 GDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALGLLV 367 GDNN DDR LY GQ WL++ ++GRA G+LP+VG VTI+M + P KY L+ +G V Sbjct: 126 GDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYV 185 Query: 366 ITSKD 352 + ++ Sbjct: 186 LLKRE 190
>SPC21_MOUSE (Q9D8V7) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 87.8 bits (216), Expect = 3e-17 Identities = 47/125 (37%), Positives = 74/125 (59%) Frame = -3 Query: 726 SMXPGFKRGDILFLRMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFMNAKESAEVDILTK 547 SM P F RGD+LFL +E P+ + + + + + ++ K++ ++ LTK Sbjct: 67 SMEPAFHRGDLLFLTNFRED-PIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTK 125 Query: 546 GDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALGLLV 367 GDNN DDR LY GQ WL++ ++GRA G+LP+VG VTI+M + P KY L+ +G V Sbjct: 126 GDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYV 185 Query: 366 ITSKD 352 + ++ Sbjct: 186 LLKRE 190
>SPC21_HUMAN (Q9BY50) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 87.8 bits (216), Expect = 3e-17 Identities = 47/125 (37%), Positives = 74/125 (59%) Frame = -3 Query: 726 SMXPGFKRGDILFLRMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFMNAKESAEVDILTK 547 SM P F RGD+LFL +E P+ + + + + + ++ K++ ++ LTK Sbjct: 67 SMEPAFHRGDLLFLTNFRED-PIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTK 125 Query: 546 GDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALGLLV 367 GDNN DDR LY GQ WL++ ++GRA G+LP+VG VTI+M + P KY L+ +G V Sbjct: 126 GDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYV 185 Query: 366 ITSKD 352 + ++ Sbjct: 186 LLKRE 190
>SPC21_CANFA (P13679) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 87.8 bits (216), Expect = 3e-17 Identities = 47/125 (37%), Positives = 74/125 (59%) Frame = -3 Query: 726 SMXPGFKRGDILFLRMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFMNAKESAEVDILTK 547 SM P F RGD+LFL +E P+ + + + + + ++ K++ ++ LTK Sbjct: 67 SMEPAFHRGDLLFLTNFRED-PIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTK 125 Query: 546 GDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALGLLV 367 GDNN DDR LY GQ WL++ ++GRA G+LP+VG VTI+M + P KY L+ +G V Sbjct: 126 GDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYV 185 Query: 366 ITSKD 352 + ++ Sbjct: 186 LLKRE 190
>SPC18_PONPY (Q5R9C7) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 84.7 bits (208), Expect = 3e-16 Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 3/128 (2%) Frame = -3 Query: 726 SMXPGFKRGDILFL-RMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFM--NAKESAEVDI 556 SM P F RGD+LFL ++P V E +++ ++ + + R + + K++ + Sbjct: 56 SMEPAFHRGDLLFLTNRVEDPIRVGE----IVVFRIEGREIPIVHRVLKIHEKQNGHIKF 111 Query: 555 LTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALG 376 LTKGDNN DDR LY GQ WL++ ++GRA G++P++G VTI+M + P KY ++ LG Sbjct: 112 LTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLG 171 Query: 375 LLVITSKD 352 L V+ ++ Sbjct: 172 LFVLVHRE 179
>SPC18_HUMAN (P67812) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 84.7 bits (208), Expect = 3e-16 Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 3/128 (2%) Frame = -3 Query: 726 SMXPGFKRGDILFL-RMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFM--NAKESAEVDI 556 SM P F RGD+LFL ++P V E +++ ++ + + R + + K++ + Sbjct: 56 SMEPAFHRGDLLFLTNRVEDPIRVGE----IVVFRIEGREIPIVHRVLKIHEKQNGHIKF 111 Query: 555 LTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALG 376 LTKGDNN DDR LY GQ WL++ ++GRA G++P++G VTI+M + P KY ++ LG Sbjct: 112 LTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLG 171 Query: 375 LLVITSKD 352 L V+ ++ Sbjct: 172 LFVLVHRE 179
>SPC18_CANFA (P67811) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 84.7 bits (208), Expect = 3e-16 Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 3/128 (2%) Frame = -3 Query: 726 SMXPGFKRGDILFL-RMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFM--NAKESAEVDI 556 SM P F RGD+LFL ++P V E +++ ++ + + R + + K++ + Sbjct: 56 SMEPAFHRGDLLFLTNRVEDPIRVGE----IVVFRIEGREIPIVHRVLKIHEKQNGHIKF 111 Query: 555 LTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALG 376 LTKGDNN DDR LY GQ WL++ ++GRA G++P++G VTI+M + P KY ++ LG Sbjct: 112 LTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLG 171 Query: 375 LLVITSKD 352 L V+ ++ Sbjct: 172 LFVLVHRE 179
>SPC18_BOVIN (P67810) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 84.7 bits (208), Expect = 3e-16 Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 3/128 (2%) Frame = -3 Query: 726 SMXPGFKRGDILFL-RMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFM--NAKESAEVDI 556 SM P F RGD+LFL ++P V E +++ ++ + + R + + K++ + Sbjct: 56 SMEPAFHRGDLLFLTNRVEDPIRVGE----IVVFRIEGREIPIVHRVLKIHEKQNGHIKF 111 Query: 555 LTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALG 376 LTKGDNN DDR LY GQ WL++ ++GRA G++P++G VTI+M + P KY ++ LG Sbjct: 112 LTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLG 171 Query: 375 LLVITSKD 352 L V+ ++ Sbjct: 172 LFVLVHRE 179
>SPC18_MOUSE (Q9R0P6) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) (Sid 2895) Length = 179 Score = 84.3 bits (207), Expect = 3e-16 Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 3/128 (2%) Frame = -3 Query: 726 SMXPGFKRGDILFL-RMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFM--NAKESAEVDI 556 SM P F RGD+LFL ++P V E +++ ++ + + R + + K+ + Sbjct: 56 SMEPAFHRGDLLFLTNRVEDPIRVGE----IVVFRIEGREIPIVHRVLKIHEKQDGHIKF 111 Query: 555 LTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALG 376 LTKGDNN DDR LY GQ WL++ ++GRA G++P++G VTI+M + P KY ++ LG Sbjct: 112 LTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLG 171 Query: 375 LLVITSKD 352 L V+ ++ Sbjct: 172 LFVLVHRE 179
>SPC18_RAT (P42667) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 82.4 bits (202), Expect = 1e-15 Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 3/128 (2%) Frame = -3 Query: 726 SMXPGFKRGDILFL-RMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFM--NAKESAEVDI 556 SM P F RGD+LFL ++P V E +++ ++ + + R + + K+ + Sbjct: 56 SMEPAFHRGDLLFLTNRVEDPIRVGE----IVVFRIEGREIPIVHRVLKIHEKQDGHIKF 111 Query: 555 LTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALG 376 LTKGDNN DDR LY GQ WL++ ++GRA G++P++G VTI+M + P Y ++ LG Sbjct: 112 LTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFSYAVLFLLG 171 Query: 375 LLVITSKD 352 L V+ ++ Sbjct: 172 LFVLVHRE 179
>SEC11_YEAST (P15367) Signal sequence-processing protein SEC11 (EC 3.4.-.-)| Length = 167 Score = 64.3 bits (155), Expect = 4e-10 Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Frame = -3 Query: 726 SMXPGFKRGDILFLRMSKEPHPVLEK*LFLMLMVVKFQLFTV*LRFMNA--KESAEVDIL 553 SM P F+RGDILFL + V + +++ V+ + + R + + + +L Sbjct: 44 SMEPAFQRGDILFLWNRNTFNQVGD----VVVYEVEGKQIPIVHRVLRQHNNHADKQFLL 99 Query: 552 TKGDNNFGDDRLLYAHGQLWLQQH-HIMGRAVGYLPHVGWVTIVMTEKPIIKYLLIGALG 376 TKGDNN G+D LYA+ +++L + I+G GY P +G++TI ++E K+ L+G LG Sbjct: 100 TKGDNNAGNDISLYANKKIYLNKSKEIVGTVKGYFPQLGYITIWISENKYAKFALLGMLG 159 Query: 375 L 373 L Sbjct: 160 L 160 Score = 40.0 bits (92), Expect = 0.007 Identities = 15/35 (42%), Positives = 27/35 (77%) Frame = -2 Query: 691 VFAHEQRTPSRTGEIVVFNVDGREIPIVHRVIKVH 587 +F + T ++ G++VV+ V+G++IPIVHRV++ H Sbjct: 55 LFLWNRNTFNQVGDVVVYEVEGKQIPIVHRVLRQH 89
>MCPT1_RAT (P09650) Mast cell protease 1 precursor (EC 3.4.21.39) (Mast cell| protease I) (RMCP-I) (RMCP-1) (Chymase) (Chymotrysin-like protease) (CLIP protein) Length = 260 Score = 31.2 bits (69), Expect = 3.4 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = +1 Query: 343 ESSVFRGYHQ--QTQRANQKVLDDRLLSHHNGNPPNVRKIAYSPPHDVMLLKPQLSVRVQ 516 E++V G H +T+ QK+ ++ + H N N YS HD+MLLK Q +V Sbjct: 70 ETTVTLGVHDVSKTESTQQKIKVEKQIVHPNYN-------FYSNLHDIMLLKLQKKAKVT 122 Query: 517 QSV 525 +V Sbjct: 123 PAV 125
>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)| Length = 1025 Score = 30.0 bits (66), Expect = 7.6 Identities = 14/59 (23%), Positives = 34/59 (57%) Frame = +1 Query: 364 YHQQTQRANQKVLDDRLLSHHNGNPPNVRKIAYSPPHDVMLLKPQLSVRVQQSVIPEIV 540 YH+ ++ Q+++ + SH+ +P +++ ++ +P H + L P V Q+ +PE++ Sbjct: 518 YHKASEVFLQRLMALYVASHYKNSPNDLQMLSDAPAHHLFCLLP--PVPPTQNALPEVL 574
>WUS_ANTMA (Q6YBV1) Protein WUSCHEL (Protein ROSULATA)| Length = 281 Score = 29.6 bits (65), Expect = 10.0 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +1 Query: 319 KLRPYDKVES-SVFRGY--HQQTQRANQKVLDDRLLSHHNGNPPNVRKIAYSPP 471 KLR Y K+E +VF + H+ +R ++ D HH+ N P + Y PP Sbjct: 74 KLRQYGKIEGKNVFYWFQNHKARERQKKRFTADH---HHHMNVPTIHNHHYKPP 124
>YXX1_ACHAM (P54008) Hypothetical UPF0202 protein (Fragment)| Length = 373 Score = 29.6 bits (65), Expect = 10.0 Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Frame = +1 Query: 364 YHQQTQRANQKVLDDRLLSHHNGNPPNVRKIAYSPPHDV-MLLKPQLSVRVQQSVIPEIV 540 YH+ ++ Q+++ + SH+ P +++ ++ +P H + +LL PQ + +P+++ Sbjct: 102 YHKLSESFLQRIMALYVASHYKNQPNDLQLLSDAPAHHIFVLLGPQAEGQGNAGQLPDVL 161 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,361,335 Number of Sequences: 219361 Number of extensions: 1999447 Number of successful extensions: 5046 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4896 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5018 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
