ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20d02 |
|---|---|
| Clone Library Name | barley_pub |
>DAAM2_HUMAN (Q86T65) Disheveled-associated activator of morphogenesis 2| Length = 1068 Score = 33.9 bits (76), Expect = 0.38 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 15/84 (17%) Frame = -1 Query: 334 EDLVAKEREMQEKLMARHATVVDSFEKKQRGQD---------------IENRIASQQQKI 200 E+ V + R+ EK H +V E+K+R + +++++A + Q++ Sbjct: 438 ENEVKQWRDQAEKFRKEHMELVSRLERKERECETKTLEKEEMMRTLNKMKDKLARESQEL 497 Query: 199 AALRQEVESLLEYLSEI*ASPVSS 128 R +V L+ LSE+ PVSS Sbjct: 498 RQARGQVAELVAQLSELSTGPVSS 521
>YG3A_YEAST (P53278) Hypothetical 92.7 kDa protein in ASN2-PHB1 intergenic| region Length = 816 Score = 32.0 bits (71), Expect = 1.4 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Frame = -1 Query: 340 KLEDLVAKEREMQEKLMARHATVVDSFEKKQ---RGQDIENRIASQQQKIAALRQEVESL 170 K EDLV + E +KL ++ V++S E K+ + DI+N+I+S ++ ++QE + Sbjct: 592 KKEDLVTQTEE-NKKLHEKNVQVLESVENKEYLPQINDIDNQISSLLNEVTIIKQENANE 650 Query: 169 LEYLSEI 149 LS I Sbjct: 651 KTQLSAI 657
>TPM1_YEAST (P17536) Tropomyosin 1| Length = 199 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -1 Query: 340 KLEDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQEVESLLEY 161 +++ L K +++++++ A + DS + +Q + EN+I S K L +E+E L Sbjct: 42 QIKSLTVKNQQLEDEIEKLEAGLSDSKQTEQDNVEKENQIKSLTVKNHQLEEEIEKLEAE 101 Query: 160 LSE 152 L+E Sbjct: 102 LAE 104
>Y1670_BACHD (Q9KCA3) UPF0302 protein BH1670| Length = 183 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -1 Query: 343 PKLEDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRI-ASQQQKIAALRQEVESLL 167 P+ EDL+AK++++ E + R V SFE+K+ + I+ + A ++ L Q+++ L Sbjct: 123 PENEDLIAKQKKLAEAFLERS---VQSFEEKELLRRIDEALDARDKETFLTLSQQLQHLR 179 Query: 166 EY 161 ++ Sbjct: 180 QH 181
>PDE6A_MOUSE (P27664) Rod cGMP-specific 3',5'-cyclic phosphodiesterase| alpha-subunit (EC 3.1.4.35) (GMP-PDE alpha) Length = 858 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +1 Query: 73 HNIYTQSGDDIQPNR*RYKMRPDSLISR*GTLEEIRPLASAQRSSAAGKQSGFLCLARAA 252 H T D I NR +K D ++ LEE + A + +A+G Q G L A Sbjct: 791 HEEITPMLDGITNNRKEWKALADEYEAKMKALEEEKQKQQAAKQAASGNQPGGNPLQGAP 850 Query: 253 SSRSC 267 +S+SC Sbjct: 851 ASKSC 855
>ACTN1_RAT (Q9Z1P2) Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform)| (Non-muscle alpha-actinin-1) (F-actin cross linking protein) Length = 892 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 YL PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 215 YLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 270 Query: 184 EVESLLE 164 E E L+E Sbjct: 271 ENEQLME 277
>ACTN1_HUMAN (P12814) Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform)| (Non-muscle alpha-actinin-1) (F-actin cross linking protein) Length = 892 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 YL PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 215 YLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 270 Query: 184 EVESLLE 164 E E L+E Sbjct: 271 ENEQLME 277
>ACTN1_CHICK (P05094) Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform)| (Non-muscle alpha-actinin-1) (F-actin cross linking protein) Length = 893 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 YL PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 216 YLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 271 Query: 184 EVESLLE 164 E E L+E Sbjct: 272 ENEQLME 278
>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2| Length = 913 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = -1 Query: 337 LEDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQE 182 L DL A E E + + + A D E KQR +D R ++Q+IAA + E Sbjct: 123 LHDLSAGEMEARRRALME-AQARDVVEAKQRAEDEARRKVEEEQRIAAEKME 173
>UACA_HUMAN (Q9BZF9) Uveal autoantigen with coiled-coil domains and ankyrin| repeats protein Length = 1416 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = -1 Query: 340 KLEDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQEVESLLE 164 KL+ V ++ +KL R VVD + K D+E +I+S +K+A L ++ E + E Sbjct: 1203 KLQSEVQNTKQALKKLETRE--VVDLSKYKATKSDLETQISSLNEKLANLNRKYEEVCE 1259
>HAPIP_RAT (P97924) Huntingtin-associated protein-interacting protein (Protein| Duo) (Kalirin) (PAM COOH-terminal interactor protein 10) (P-CIP10) Length = 1919 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Frame = -1 Query: 334 EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQ--------QKIAALRQEV 179 EDL E+ +Q + A +FE Q+GQD+ I Q +K L +V Sbjct: 804 EDLTLAEQRLQRHTERKLAMNNMTFEVIQQGQDLHQYIMEVQASGIELICEKDVDLAAQV 863 Query: 178 ESLLEYLSE 152 + LLE+L E Sbjct: 864 QELLEFLHE 872
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -1 Query: 352 LIWPKLEDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQEVES 173 L W E + R+ +E+ M RH T + S +Q E+ + QQ+ + Q++ S Sbjct: 557 LEWEMREKQAEEMRKREEETMRRHQTEMQSHMNRQE----EDMLRRQQETLFMKAQQLNS 612 Query: 172 LLE 164 LL+ Sbjct: 613 LLD 615
>HAPIP_HUMAN (O60229) Huntingtin-associated protein-interacting protein (Protein| Duo) Length = 1663 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Frame = -1 Query: 334 EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQ--------QKIAALRQEV 179 EDL E+ +Q + A +FE Q+GQD+ I Q +K L +V Sbjct: 802 EDLTLAEQRLQRHTERKLAMNNMTFEVIQQGQDLHQYITEVQASGIELICEKDIDLAAQV 861 Query: 178 ESLLEYLSE 152 + LLE+L E Sbjct: 862 QELLEFLHE 870
>ACTN4_HUMAN (O43707) Alpha-actinin-4 (Non-muscle alpha-actinin 4) (F-actin| cross linking protein) Length = 911 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 YL PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 234 YLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 289 Query: 184 EVESLLE 164 E E L+E Sbjct: 290 ENEHLME 296
>ACTN4_CHICK (Q90734) Alpha-actinin-4 (Non-muscle alpha-actinin 4) (F-actin| cross linking protein) Length = 904 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 YL PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 227 YLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 282 Query: 184 EVESLLE 164 E E L+E Sbjct: 283 ENEHLME 289
>ACTN4_MOUSE (P57780) Alpha-actinin-4 (Non-muscle alpha-actinin 4) (F-actin| cross linking protein) Length = 912 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 YL PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 235 YLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 290 Query: 184 EVESLLE 164 E E L+E Sbjct: 291 ENEHLME 297
>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle| Length = 1938 Score = 30.0 bits (66), Expect = 5.5 Identities = 18/60 (30%), Positives = 32/60 (53%) Frame = -1 Query: 337 LEDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQEVESLLEYL 158 +EDL +RE++E + + A + K +D +N ++ Q+KI L+ +E L E L Sbjct: 1063 VEDLERVKRELEENVRRKEAEISSLNSKL---EDEQNLVSQLQRKIKELQARIEELEEEL 1119
>ACTN4_RAT (Q9QXQ0) Alpha-actinin-4 (Non-muscle alpha-actinin 4) (F-actin| cross linking protein) Length = 911 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 YL PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 234 YLDIPKMLDAEDIVNTGRPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 289 Query: 184 EVESLLE 164 E E L+E Sbjct: 290 ENEHLME 296
>ACTN1_MOUSE (Q7TPR4) Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform)| (Non-muscle alpha-actinin-1) (F-actin cross linking protein) Length = 892 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 355 YLIWPKL---EDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIASQQQKIAALRQ 185 +L PK+ ED+V R ++ +M ++ +F Q+ + NRI K+ A+ Q Sbjct: 215 FLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRIC----KVLAVNQ 270 Query: 184 EVESLLE 164 E E L+E Sbjct: 271 ENEQLME 277
>SMG1_HUMAN (Q96Q15) Serine/threonine-protein kinase SMG1 (EC 2.7.11.1) (SMG-1)| (hSMG-1) (Lambda/iota protein kinase C-interacting protein) (Lambda-interacting protein) (61E3.4) Length = 3657 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -1 Query: 334 EDLVAKEREMQEKLMARHATVVDSFEKKQRG-QDIENRIASQQQKIAALRQEVESLLEYL 158 EDL+ + + ++ S +KK IE IA+ Q+K+AAL +E L++ Sbjct: 3201 EDLLINRPQAMSVTPPPRSAILTSMKKKLHTLSQIETSIATVQEKLAALESSIEQRLKWA 3260 Query: 157 SEI*ASPVSSYIVSD 113 A+P + ++ D Sbjct: 3261 GG--ANPALAPVLQD 3273
>CLPB_STAAW (Q8NXE7) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 253 KQRGQDIENRIASQQQKIAALRQEVESLLEYLSEI 149 KQR Q+++ +A++++K AAL+ VES E ++ + Sbjct: 437 KQRLQELQEELANEKEKQAALQSRVESEKEKIANL 471
>CLPB_STAAS (Q6GAV1) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 253 KQRGQDIENRIASQQQKIAALRQEVESLLEYLSEI 149 KQR Q+++ +A++++K AAL+ VES E ++ + Sbjct: 437 KQRLQELQEELANEKEKQAALQSRVESEKEKIANL 471
>CLPB_STAAR (Q6GIB2) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 253 KQRGQDIENRIASQQQKIAALRQEVESLLEYLSEI 149 KQR Q+++ +A++++K AAL+ VES E ++ + Sbjct: 437 KQRLQELQEELANEKEKQAALQSRVESEKEKIANL 471
>CLPB_STAAN (Q7A6G6) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 253 KQRGQDIENRIASQQQKIAALRQEVESLLEYLSEI 149 KQR Q+++ +A++++K AAL+ VES E ++ + Sbjct: 437 KQRLQELQEELANEKEKQAALQSRVESEKEKIANL 471
>CLPB_STAAM (Q99VB5) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 253 KQRGQDIENRIASQQQKIAALRQEVESLLEYLSEI 149 KQR Q+++ +A++++K AAL+ VES E ++ + Sbjct: 437 KQRLQELQEELANEKEKQAALQSRVESEKEKIANL 471
>CLPB_STAAC (Q5HHB0) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 253 KQRGQDIENRIASQQQKIAALRQEVESLLEYLSEI 149 KQR Q+++ +A++++K AAL+ VES E ++ + Sbjct: 437 KQRLQELQEELANEKEKQAALQSRVESEKEKIANL 471
>CART1_XENLA (Q91574) Cartilage homeoprotein 1 (CART-1) (XCART1)| Length = 335 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/48 (27%), Positives = 23/48 (47%) Frame = +3 Query: 252 FFSKLSTTVACLAMSFSCISLSFATRSSSFGHIR*D*GDDCTDNNSGF 395 F+SK VA A + C+ F+ + H+R + C +NN+ + Sbjct: 40 FYSKSPAVVAAAAGASKCVQQGFSAIHRAEHHVRMERASPCQENNANY 87
>HDA3_ASHGO (Q758V8) HDA1 complex subunit 3 (Histone deacetylase complex 1| subunit 3) Length = 637 Score = 29.6 bits (65), Expect = 7.2 Identities = 26/143 (18%), Positives = 62/143 (43%), Gaps = 3/143 (2%) Frame = -1 Query: 568 DEVQATVQQIQGIFEQCLAVHDKLEISLHDLSRTGDTKSC---KATRKAADAQFXXXXXX 398 D+++ I + Q H + DL++T +T + A K ++A + Sbjct: 482 DQLEVLEADISDLLGQLDGRHQGFKQLWDDLNQTENTLALYRTNANAKRSEASYMEEELI 541 Query: 397 XXXXXXXXXXXXXSYLIWPKLEDLVAKEREMQEKLMARHATVVDSFEKKQRGQDIENRIA 218 + L+ +E L A ++ +EK + + K + +D+E+ I Sbjct: 542 RAEKSVAESENEQTQLL-RDVEHLEALIQDCREKDKQQQQVI------KNKSKDMEDDIT 594 Query: 217 SQQQKIAALRQEVESLLEYLSEI 149 +++ + AL+ ++ +++EYL ++ Sbjct: 595 QKKEAVLALQNQLGTIMEYLKQL 617 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,326,731 Number of Sequences: 219361 Number of extensions: 1209723 Number of successful extensions: 3886 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3745 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3884 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
