ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20c18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478229.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1266 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 590 ggcgcggccgattgtgtgtgcaccggagagcacg 623 |||||||||||| ||||| ||||||||||||||| Sbjct: 705 ggcgcggccgatggtgtgcgcaccggagagcacg 672
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 590 ggcgcggccgattgtgtgtgcaccggagagcacg 623 |||||||||||| ||||| ||||||||||||||| Sbjct: 18713000 ggcgcggccgatggtgtgcgcaccggagagcacg 18712967 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 406 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 458 ||||||| ||| ||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 26551003 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 26550951
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 590 ggcgcggccgattgtgtgtgcaccggagagcacg 623 |||||||||||| ||||| ||||||||||||||| Sbjct: 45288 ggcgcggccgatggtgtgcgcaccggagagcacg 45255
>dbj|AK108797.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C03, full insert sequence Length = 1266 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 590 ggcgcggccgattgtgtgtgcaccggagagcacg 623 |||||||||||| ||||| ||||||||||||||| Sbjct: 705 ggcgcggccgatggtgtgcgcaccggagagcacg 672
>tpe|BN000631.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx102 gene for class III peroxidase 102 precursor, exons 1-3 Length = 1252 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 590 ggcgcggccgattgtgtgtgcaccggagagcacg 623 |||||||||||| ||||| ||||||||||||||| Sbjct: 856 ggcgcggccgatggtgtgcgcaccggagagcacg 823
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 4 ttaatgctcctataataccgtgttaagaaacaatgcatt 42 ||||| ||||||| ||| ||||||||||||| ||||||| Sbjct: 72091 ttaatcctcctatgataacgtgttaagaaacgatgcatt 72129
>gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, complete sequence Length = 171289 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tagggggatccaaccatggagc 202 |||||||||||||||||||||| Sbjct: 130238 tagggggatccaaccatggagc 130259
>dbj|AB194045.1| Leptotrombidium akamushi mitochondrial DNA, complete genome Length = 13698 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 tgttgattctcgtgcatacttt 262 |||||||||||||||||||||| Sbjct: 1892 tgttgattctcgtgcatacttt 1913
>ref|XM_479280.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 406 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 458 ||||||| ||| ||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
>ref|XM_506502.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1340_C08.125 mRNA Length = 1231 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 406 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 458 ||||||| ||| ||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 ggctggagaaaaacatgcagc 588 ||||||||||||||||||||| Sbjct: 773610 ggctggagaaaaacatgcagc 773590
>gb|AC025039.7| Homo sapiens chromosome 10 clone RP11-457M15, complete sequence Length = 172790 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 aaaatcaacaatgacagtaga 154 ||||||||||||||||||||| Sbjct: 23963 aaaatcaacaatgacagtaga 23983
>gb|AC018508.9| Homo sapiens chromosome 10 clone RP11-123L21, complete sequence Length = 149901 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 aaaatcaacaatgacagtaga 154 ||||||||||||||||||||| Sbjct: 52067 aaaatcaacaatgacagtaga 52047
>gb|AC146920.3| Otolemur garnettii clone CH256-154N14, complete sequence Length = 163387 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 ggctggagaaaaacatgcagc 588 ||||||||||||||||||||| Sbjct: 47806 ggctggagaaaaacatgcagc 47786
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 406 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 458 ||||||| ||| ||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 96274 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 96222
>dbj|AK102122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084O03, full insert sequence Length = 1231 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 406 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 458 ||||||| ||| ||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
>dbj|AK073381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028K07, full insert sequence Length = 1227 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 406 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 458 ||||||| ||| ||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
>tpe|BN000636.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx107 gene for class III peroxidase 107 precursor, exons 1-2 Length = 1067 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 406 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 458 ||||||| ||| ||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 900 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 848
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2410147 gttgttgattctcgtgcata 2410166
>ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 593 gcggccgattgtgtgtgcaccggagagcacgaccatctcgtcagaggtgagc 644 |||||||| ||||| || |||||||| ||||||||||| || | ||||||| Sbjct: 597 gcggccgacggtgtgggcgccggagaggacgaccatctcctcggcggtgagc 546
>gb|AC160765.4| Mus musculus BAC clone RP23-26O24 from chromosome 13, complete sequence Length = 234761 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaccatggagccagccaacc 211 |||||||||||||||||||| Sbjct: 187964 aaccatggagccagccaacc 187945
>gb|U41748.1| Caenorhabditis elegans cosmid C31H2, complete sequence Length = 40553 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gacgaagttacatctcgtcc 179 |||||||||||||||||||| Sbjct: 23285 gacgaagttacatctcgtcc 23304
>gb|AY508516.1| Zea mays disrupted peroxidase (pox3) gene, partial sequence; and transposon MITE, complete sequence Length = 1744 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 1029 gccgatggtgtgcgcgccggagagcacgacca 998
>gb|AY508163.1| Zea mays cultivar F324 disrupted peroxidase (pox3) gene, exons 1 through 3; and transposon MITE, complete sequence Length = 1744 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 1029 gccgatggtgtgcgcgccggagagcacgacca 998
>gb|AY508162.1| Zea mays cultivar F227 disrupted peroxidase (pox3) gene, exons 1 through 3; and transposon MITE, complete sequence Length = 1744 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 1029 gccgatggtgtgcgcgccggagagcacgacca 998
>gb|AY508161.1| Zea mays cultivar F226 disrupted peroxidase (pox3) gene, exons 1 through 3; and transposon MITE, complete sequence Length = 1744 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 1029 gccgatggtgtgcgcgccggagagcacgacca 998
>gb|AY508160.1| Zea mays cultivar F7012 disrupted peroxidase (pox3) gene, exons 1 through 3; and transposon MITE, complete sequence Length = 1744 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 1029 gccgatggtgtgcgcgccggagagcacgacca 998
>gb|AY508159.1| Zea mays cultivar Quebec28 disrupted peroxidase (pox3) gene, pox3-2 allele, exons 1 through 3; and transposon MITE, complete sequence Length = 1752 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 1029 gccgatggtgtgcgcgccggagagcacgacca 998
>gb|AY500812.1| Zea mays cultivar F271 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1414 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500811.1| Zea mays cultivar F66 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500810.1| Zea mays cultivar 212 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1414 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500809.1| Zea mays cultivar F120 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500808.1| Zea mays cultivar W117 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1414 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500807.1| Zea mays cultivar Mo17 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1428 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500806.1| Zea mays cultivar Lan496 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1436 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 706 gccgatggtgtgcgcgccggagagcacgacca 675
>gb|AY500805.1| Zea mays cultivar MBS847 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500804.1| Zea mays cultivar F7025 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500803.1| Zea mays cultivar F4 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1427 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 709 gccgatggtgtgcgcgccggagagcacgacca 678
>gb|AY500802.1| Zea mays cultivar F288 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1426 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 708 gccgatggtgtgcgcgccggagagcacgacca 677
>gb|AY500801.1| Zea mays cultivar F2 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1413 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 697 gccgatggtgtgcgcgccggagagcacgacca 666
>gb|AY500800.1| Zea mays cultivar B73 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500799.1| Zea mays cultivar F1 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1424 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 708 gccgatggtgtgcgcgccggagagcacgacca 677
>gb|AY500798.1| Zea mays cultivar 16 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500797.1| Zea mays cultivar EP1 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1415 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 697 gccgatggtgtgcgcgccggagagcacgacca 666
>gb|AY500796.1| Zea mays cultivar F286 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500795.1| Zea mays cultivar Du101 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1436 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 708 gccgatggtgtgcgcgccggagagcacgacca 677
>gb|AY500794.1| Zea mays cultivar F64 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500793.1| Zea mays cultivar F113 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1424 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 706 gccgatggtgtgcgcgccggagagcacgacca 675
>gb|AY500792.1| Zea mays cultivar F564 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1415 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 697 gccgatggtgtgcgcgccggagagcacgacca 666
>gb|AY500791.1| Zea mays cultivar B14 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1424 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 708 gccgatggtgtgcgcgccggagagcacgacca 677
>gb|AY500790.1| Zea mays cultivar Wis93-3520 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1415 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 697 gccgatggtgtgcgcgccggagagcacgacca 666
>gb|AY500789.1| Zea mays cultivar W64A peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1414 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500788.1| Zea mays cultivar Wis94-443 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1415 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 697 gccgatggtgtgcgcgccggagagcacgacca 666
>gb|AY500787.1| Zea mays cultivar DE811 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1422 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 707 gccgatggtgtgcgcgccggagagcacgacca 676
>gb|AY500786.1| Zea mays cultivar RotalerSilomais peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1424 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 708 gccgatggtgtgcgcgccggagagcacgacca 677
>gb|AY500785.1| Zea mays cultivar NoordlanderVC145 peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1436 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 706 gccgatggtgtgcgcgccggagagcacgacca 675
>gb|AY500784.1| Zea mays cultivar RainbowFlint peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1416 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 698 gccgatggtgtgcgcgccggagagcacgacca 667
>gb|AY500783.1| Zea mays cultivar PolarDent peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1424 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 708 gccgatggtgtgcgcgccggagagcacgacca 677
>gb|AY500782.1| Zea mays cultivar Sibiriacka peroxidase (pox3) gene, exons 1 through 3 and partial cds Length = 1413 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 697 gccgatggtgtgcgcgccggagagcacgacca 666
>gb|AY500781.1| Zea mays cultivar Quebec28 peroxidase (pox3) gene, pox3-1 allele, exons 1 through 3 and partial cds Length = 1426 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 596 gccgattgtgtgtgcaccggagagcacgacca 627 |||||| ||||| || |||||||||||||||| Sbjct: 708 gccgatggtgtgcgcgccggagagcacgacca 677
>gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosome 19, complete sequence Length = 180516 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 ttcccatattctccatggctctct 330 |||||||| ||||||||||||||| Sbjct: 54313 ttcccataatctccatggctctct 54290
>emb|Z83119.1|CER05H10 Caenorhabditis elegans Cosmid R05H10, complete sequence Length = 44237 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 caccggagagcacgaccatctcgt 633 |||||||||||| ||||||||||| Sbjct: 18984 caccggagagcaagaccatctcgt 19007
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2684539 gttgttgattctcgtgcata 2684558
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2534176 gttgttgattctcgtgcata 2534195
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 atctctgcgccttggtcggc 286 |||||||||||||||||||| Sbjct: 1617018 atctctgcgccttggtcggc 1617037
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2400056 gttgttgattctcgtgcata 2400075
>emb|X68301.1|ECNUOO E.coli DNA sequence of nuo operon Length = 15865 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 3407 gttgttgattctcgtgcata 3388
>gb|AE008804.1| Salmonella typhimurium LT2, section 108 of 220 of the complete genome Length = 20092 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 12582 gttgttgattctcgtgcata 12601
>emb|AL627274.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 10/20 Length = 256050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 90492 gttgttgattctcgtgcata 90511
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2406704 gttgttgattctcgtgcata 2406723
>ref|NM_171677.1| Caenorhabditis elegans C31H2.1a (C31H2.1) mRNA, complete cds Length = 2091 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gacgaagttacatctcgtcc 179 |||||||||||||||||||| Sbjct: 1468 gacgaagttacatctcgtcc 1487
>ref|NM_171949.3| Caenorhabditis elegans C31H2.1b (C31H2.1) mRNA, complete cds Length = 2398 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gacgaagttacatctcgtcc 179 |||||||||||||||||||| Sbjct: 1323 gacgaagttacatctcgtcc 1342
>ref|NM_064674.2| Caenorhabditis elegans CaDHerin family member (cdh-7) (cdh-7) mRNA, complete cds Length = 4254 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 caccggagagcacgaccatctcgt 633 |||||||||||| ||||||||||| Sbjct: 717 caccggagagcaagaccatctcgt 740
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 atttttcccatattctccat 322 |||||||||||||||||||| Sbjct: 2748448 atttttcccatattctccat 2748429
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 593 gcggccgattgtgtgtgcaccggagagcacgaccatctcgtcagaggtgagc 644 |||||||| ||||| || |||||||| ||||||||||| || | ||||||| Sbjct: 12539304 gcggccgacggtgtgggcgccggagaggacgaccatctcctcggcggtgagc 12539253
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2389604 gttgttgattctcgtgcata 2389623
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 611452 gttgttgattctcgtgcata 611433
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 593 gcggccgattgtgtgtgcaccggagagcacgaccatctcgtcagaggtgagc 644 |||||||| ||||| || |||||||| ||||||||||| || | ||||||| Sbjct: 50914 gcggccgacggtgtgggcgccggagaggacgaccatctcctcggcggtgagc 50863
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 593 gcggccgattgtgtgtgcaccggagagcacgaccatctcgtcagaggtgagc 644 |||||||| ||||| || |||||||| ||||||||||| || | ||||||| Sbjct: 124919 gcggccgacggtgtgggcgccggagaggacgaccatctcctcggcggtgagc 124868
>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full insert sequence Length = 5938 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 593 gcggccgattgtgtgtgcaccggagagcacgaccatctcgtcagaggtgagc 644 |||||||| ||||| || |||||||| ||||||||||| || | ||||||| Sbjct: 5095 gcggccgacggtgtgggcgccggagaggacgaccatctcctcggcggtgagc 5044
>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for class III peroxidase 14 precursor, exons 1-3 Length = 5620 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 593 gcggccgattgtgtgtgcaccggagagcacgaccatctcgtcagaggtgagc 644 |||||||| ||||| || |||||||| ||||||||||| || | ||||||| Sbjct: 5032 gcggccgacggtgtgggcgccggagaggacgaccatctcctcggcggtgagc 4981
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 613220 gttgttgattctcgtgcata 613201
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2450863 gttgttgattctcgtgcata 2450882
>dbj|AP000741.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-63O14, complete sequence Length = 156136 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tggagccagccaaccagccc 216 |||||||||||||||||||| Sbjct: 133637 tggagccagccaaccagccc 133618
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 atttttcccatattctccat 322 |||||||||||||||||||| Sbjct: 1545879 atttttcccatattctccat 1545898
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 3198160 gttgttgattctcgtgcata 3198179
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 3128204 gttgttgattctcgtgcata 3128223
>gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, complete sequence Length = 206019 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 ttcccatattctccatggctctct 330 |||||||| ||||||||||||||| Sbjct: 75077 ttcccataatctccatggctctct 75100
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2281789 gttgttgattctcgtgcata 2281808
>emb|AL928681.5| Mouse DNA sequence from clone RP23-82M15 on chromosome 2, complete sequence Length = 125926 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgtatgagaaaatcaacaat 145 |||||||||||||||||||| Sbjct: 45015 tgtatgagaaaatcaacaat 45034
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2308852 gttgttgattctcgtgcata 2308871
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 2473034 gttgttgattctcgtgcata 2473053
>gb|L22504.1|STYNUOD Salmonella typhimurium NADH dehydrogenase subunits nuoD, nuoG and nuoE, nuoF (nuo) genes, complete cds Length = 3950 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 267 gttgttgattctcgtgcata 248
>gb|L25055.1|ECONUOD Escherichia coli NADH dehydrogenase (nuoD), (nuoE), (nuoF), (nuoG) gene, complete cds Length = 3667 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gttgttgattctcgtgcata 258 |||||||||||||||||||| Sbjct: 1290 gttgttgattctcgtgcata 1271 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,456,106 Number of Sequences: 3902068 Number of extensions: 4456106 Number of successful extensions: 109511 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108928 Number of HSP's gapped (non-prelim): 583 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
