ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20c11 |
|---|---|
| Clone Library Name | barley_pub |
>IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase inhibitor WIP1| precursor Length = 102 Score = 30.8 bits (68), Expect = 0.81 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Frame = -1 Query: 343 SGVXVCXDAHPQCPKGCSACRVVTP---SPHKTFRCADMKSTVDGTCGGPC 200 SG+ C D C C C V S + FRC D T G CG C Sbjct: 55 SGLYTCDDVKKDCDPVCKKCVVAVHASYSGNNKFRCTD---TFLGMCGPKC 102
>MET2_YEAST (P08465) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) Length = 486 Score = 30.8 bits (68), Expect = 0.81 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 97 WAVLYGQQYVRCXSSLCFLAREKDWC 20 WA +YG++YV+ +L AR WC Sbjct: 171 WAAMYGKEYVKNMVALATSARHSAWC 196
>ARHG6_MOUSE (Q8K4I3) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) Length = 771 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 16/93 (17%) Frame = +3 Query: 3 CLFNKQHQSFSRARKHSDDXQRTYCW----------PYSTAHTQT*XHDDCSXHLSFILG 152 C+F + R H ++ Q W P S CS H SF Sbjct: 513 CMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPTSCGSLSKTSSSSCSTHSSFSST 572 Query: 153 GTPRPSL------KP*SDQCFLHGPPQVPSTVL 233 G PR L KP S C PP PS L Sbjct: 573 GQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAAL 605
>DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)| Length = 347 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = -1 Query: 157 VPPRIKLR*XEQSSXCYVCVWAVLYGQQYVRCXSSLC 47 +PPR++ EQ S C +C+ + + +C S C Sbjct: 149 LPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFC 185
>ARHG6_HUMAN (Q15052) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) (PAK-interacting exchange factor alpha) (Alpha-Pix) (COOL-2) Length = 776 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 16/93 (17%) Frame = +3 Query: 3 CLFNKQHQSFSRARKHSDDXQRTYCW----------PYSTAHTQT*XHDDCSXHLSFILG 152 C F + R H ++ Q W P S + CS H SF Sbjct: 514 CTFEITGNTVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTSSSSCSAHSSFSST 573 Query: 153 GTPRPSL------KP*SDQCFLHGPPQVPSTVL 233 G PR L KP S C PP PS L Sbjct: 574 GQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAAL 606
>MET2_SACPS (Q06736) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) Length = 486 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -1 Query: 97 WAVLYGQQYVRCXSSLCFLAREKDWC 20 W +YG +YV+ +L AR WC Sbjct: 171 WTAMYGNEYVKNMVALATSARHSAWC 196
>ARHG6_RAT (Q5XXR3) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) Length = 772 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 16/93 (17%) Frame = +3 Query: 3 CLFNKQHQSFSRARKHSDDXQRTYCW----------PYSTAHTQT*XHDDCSXHLSFILG 152 C F + R H ++ Q W P S + CS H SF Sbjct: 514 CTFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKGPASCSSLSKTSSSSCSTHSSFSST 573 Query: 153 GTPRPSL------KP*SDQCFLHGPPQVPSTVL 233 G PR L KP S C PP PS L Sbjct: 574 GQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAAL 606
>ASPQ_ACIGL (P10172) Glutaminase-asparaginase (EC 3.5.1.38)| (L-asparagine/L-glutamine amidohydrolase) (L-ASNase/L-GLNase) Length = 331 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 270 GVTTRQAEQPLGHWGWASXHTSTPEK 347 G R AEQP +GW + H P+K Sbjct: 281 GFVLRNAEQPDDKYGWIAAHDLNPQK 306
>PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS)| Length = 5045 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Frame = +3 Query: 213 QVPSTVLFMSAQRNVL*GL--GVTTRQAEQPLGHWGWASXHTST 338 Q+P T +FMSA N L TT E P G+ W + T Sbjct: 1869 QIPQTSVFMSASNNSYRALLPSDTTESLETPDGYVSWVLAQSGT 1912
>IBB1_ARAHY (P01066) Bowman-Birk type proteinase inhibitor A-II [Contains:| Bowman-Birk type proteinase inhibitor A-I; Bowman-Birk type proteinase inhibitor B-I; Bowman-Birk type proteinase inhibitor B-III] Length = 70 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -1 Query: 331 VCXDAHPQCPKGCSACRVVTPSPHKTFRCAD 239 VC D CP C++C V T S RC D Sbjct: 28 VCVDTFDHCPASCNSC-VCTRSNPPQCRCTD 57
>PNS1_KLULA (Q6CY85) Protein PNS1| Length = 553 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -1 Query: 109 YVCVWAVLYGQQYVRCXSSLCFLAREKDWCCLLN 8 Y V+ LYG+ Y+R ++ REK L+N Sbjct: 412 YAYVFIALYGKPYLRAAKETWYMLREKGIDALIN 445
>RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) (RecQ| protein-like 5) (RecQ5) Length = 991 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -1 Query: 322 DAHPQCPKGCSACRVVTPSPHKTFRCADMKSTVDGTCGGP 203 DA P C KGC C+ T + + + S+ TC GP Sbjct: 422 DALPACAKGCDHCQNPT-AVRRRLEALERSSSWSKTCIGP 460
>POLG_HCVJL (Q68798) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3021 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +3 Query: 186 DQCFLHGPPQVPSTVLFMSAQRNVL*GLGVTTRQAEQ--PLGHWGW 317 ++C H P V L ++NVL + VTT+QAE+ P H W Sbjct: 1712 EECSRHLPYLVEGQQLAEQFKQNVLGLIQVTTKQAEELKPAVHSAW 1757
>DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)| Length = 347 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = -1 Query: 157 VPPRIKLR*XEQSSXCYVCVWAVLYGQQYVRCXSSLC 47 +PPR++ EQ + C +C+ + + +C S C Sbjct: 149 LPPRLREDAEEQETTCPICLGEIQNAKTLEKCRHSFC 185
>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 319 AHPQCPKGCSACRVVTPSPHKTFRCADMKSTVDGTCGG 206 A P CPKG AC + S + C D + ++ +CGG Sbjct: 176 AVPACPKGLDAC-PIAGSSLGDYECLDTSAELE-SCGG 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,868,248 Number of Sequences: 219361 Number of extensions: 668211 Number of successful extensions: 1451 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1448 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
