ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcrip... 78 1e-14
2MYB1_PHYPA (P80074) Myb-related protein Pp1 (Fragment) 33 0.42
3MYB1_MAIZE (P20024) Myb-related protein Zm1 32 0.55
4LAF1_ARATH (Q9M0K4) Transcription factor LAF1 (Long after far-re... 31 1.2
5ODO1_PETHY (Q50EX6) ODORANT1 protein (MYB-like protein ODO1) 30 2.7
6MYB2_PHYPA (P80073) Myb-related protein Pp2 30 2.7
7MYBA1_ORYSA (Q53NK6) Myb-related protein MYBAS1 29 4.6
8MYBA2_ORYSA (Q4JL76) Myb-related protein MYBAS2 29 4.6
9MYB59_ARATH (Q4JL84) Transcription factor MYB59 (Myb-related pro... 29 4.6
10MYB48_ARATH (Q9LX82) Transcription factor MYB48 (Myb-related pro... 29 4.6
11RT05_CAEEL (Q93425) Putative mitochondrial 40S ribosomal protein S5 29 6.0
12MYB4_ARATH (Q9SZP1) Transcription repressor MYB4 (Myb-related pr... 28 7.9
13MYB1_HORVU (P20026) Myb-related protein Hv1 28 7.9

>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor|
           RLTR1)
          Length = 257

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 54/162 (33%), Positives = 69/162 (42%), Gaps = 20/162 (12%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRLQXXXXXXXXXXXXXXXXXXXXXXXXXADGSASVPVSPEQPIXXXX 266
           NEIKNVWHTHLKKRL                          A  +A+ P SPE+      
Sbjct: 102 NEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAAAAAAPPASPERSASSSV 161

Query: 265 XXXXXXXSL------------------ENTDSFTS--EEFXIEDSFWSXTLAMTVDNSGS 146
                  S+                  +   SFTS  EEF I+DSFWS TL+M +D    
Sbjct: 162 TESSMASSVAEEHGNAGISSASASVCAKEESSFTSASEEFQIDDSFWSETLSMPLDGYDV 221

Query: 145 PMXAGVTLGAQXSASPSSSNDEVDFWVRLFMQAGEVQSLSHI 20
            M  G    A  SA      D++D+W+ +FM++GE Q L  I
Sbjct: 222 SMEPGDAFVAPPSA------DDMDYWLGVFMESGEAQDLPQI 257



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>MYB1_PHYPA (P80074) Myb-related protein Pp1 (Fragment)|
          Length = 449

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRL 401
           NEIKN W+THLKKRL
Sbjct: 16  NEIKNYWNTHLKKRL 30



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>MYB1_MAIZE (P20024) Myb-related protein Zm1|
          Length = 340

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRL 401
           NEIKNVW+THLKK++
Sbjct: 104 NEIKNVWNTHLKKKV 118



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>LAF1_ARATH (Q9M0K4) Transcription factor LAF1 (Long after far-red light|
           protein 1) (Myb-related protein 18) (AtMYB18)
          Length = 283

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKR 404
           NEIKN WH+HLKK+
Sbjct: 100 NEIKNYWHSHLKKK 113



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>ODO1_PETHY (Q50EX6) ODORANT1 protein (MYB-like protein ODO1)|
          Length = 294

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRL 401
           NEIKN W+TH+KK+L
Sbjct: 102 NEIKNHWNTHIKKKL 116



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>MYB2_PHYPA (P80073) Myb-related protein Pp2|
          Length = 421

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRLQ 398
           NEIKN W+T LKKRL+
Sbjct: 102 NEIKNYWNTRLKKRLR 117



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>MYBA1_ORYSA (Q53NK6) Myb-related protein MYBAS1|
          Length = 237

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRLQ 398
           NEIKN W TH++K+ Q
Sbjct: 98  NEIKNYWRTHMRKKAQ 113



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>MYBA2_ORYSA (Q4JL76) Myb-related protein MYBAS2|
          Length = 242

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRLQ 398
           NEIKN W TH++K+ Q
Sbjct: 98  NEIKNYWRTHMRKKAQ 113



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>MYB59_ARATH (Q4JL84) Transcription factor MYB59 (Myb-related protein 59)|
           (AtMYB59)
          Length = 235

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRLQ 398
           NEIKN W TH++K+ Q
Sbjct: 98  NEIKNYWRTHMRKKAQ 113



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>MYB48_ARATH (Q9LX82) Transcription factor MYB48 (Myb-related protein 48)|
           (AtMYB48)
          Length = 256

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRLQ 398
           NEIKN W TH++K+ Q
Sbjct: 97  NEIKNYWRTHMRKKAQ 112



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>RT05_CAEEL (Q93425) Putative mitochondrial 40S ribosomal protein S5|
          Length = 418

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 14  CLNVRQTLHLASLHEQSDPEVHLVVAGRGRCTXLGAQGDAGVHRGTGVV 160
           CL V++T ++ ++  +      LVV G GR     A G A +HR T  +
Sbjct: 138 CLEVKRTSNMTNVFGRVHTMSALVVTGNGRGLAGYAVGKAPIHRTTTAI 186



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>MYB4_ARATH (Q9SZP1) Transcription repressor MYB4 (Myb-related protein 4)|
           (AtMYB4)
          Length = 282

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRL 401
           NEIKN W+TH++++L
Sbjct: 102 NEIKNYWNTHIRRKL 116



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>MYB1_HORVU (P20026) Myb-related protein Hv1|
          Length = 267

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 445 NEIKNVWHTHLKKRL 401
           NEIKN W+TH++++L
Sbjct: 102 NEIKNYWNTHIRRKL 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,918,415
Number of Sequences: 219361
Number of extensions: 921090
Number of successful extensions: 2549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2546
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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