ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473184.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 774 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 344 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 303
>gb|AY615199.1| Triticum aestivum transcription factor Myb2 (Myb2) mRNA, complete cds Length = 1044 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 411 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 370
>gb|AY323484.1| Oryza sativa (japonica cultivar-group) myb-related protein (LTR1) mRNA, complete cds Length = 1207 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 432 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 391
>emb|Y11414.1|OSMYB1202 O.sativa mRNA for myb factor, 1202 bp Length = 1202 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 422 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 381
>emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcription factor Length = 1180 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 340 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 299
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 34648 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 34689
>dbj|AB252147.1| Triticum aestivum Tamyb7 mRNA for myb-related protein, complete cds Length = 876 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 366 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 325
>gb|AF467733.1| Oryza sativa myb protein mRNA, complete cds Length = 673 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 422 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 381
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 25817238 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 25817279 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||| ||| |||||||||||||||||| Sbjct: 30003199 cgcttcttgaggtgcgtgttccagacgttcttgatctcgttg 30003240
>dbj|AK111798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105H16, full insert sequence Length = 1836 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 1074 cgcttcttgaggtgggtgtgccacacgttcttgatctcgttg 1033
>emb|AM156907.1| Zea mays mRNA for transcription factor MYB39 (myb39 gene) Length = 1078 Score = 69.9 bits (35), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| |||||||||||||||||| Sbjct: 495 cgcttcttgaggtgggtgtgccagacgttcttgatctcgttg 454 Score = 46.1 bits (23), Expect = 0.097 Identities = 47/55 (85%) Strand = Plus / Minus Query: 48 gcctgcatgaacagtctgacccagaagtccacctcgtcgttgctggacgagggcg 102 |||||||||||||| ||| ||||||||||| ||||||||| | ||||| |||| Sbjct: 888 gcctgcatgaacagcttgagccagaagtccatgtcgtcgttggtcgacgacggcg 834
>ref|NM_197015.1| Oryza sativa (japonica cultivar-group) putative myb factor (OSJNBa0055P24.4), mRNA Length = 831 Score = 65.9 bits (33), Expect = 1e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||| |||||||| |||||||||||||||||| Sbjct: 342 cttcttgaggtgagtgtgccacacgttcttgatctcgttg 303
>emb|Y11350.1|OSMYB1084 O.sativa mRNA for myb factor, 1084 bp Length = 1084 Score = 65.9 bits (33), Expect = 1e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||| |||||||| |||||||||||||||||| Sbjct: 468 cttcttgaggtgagtgtgccacacgttcttgatctcgttg 429
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 65.9 bits (33), Expect = 1e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||| |||||||| |||||||||||||||||| Sbjct: 17409362 cttcttgaggtgagtgtgccacacgttcttgatctcgttg 17409401
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete sequence Length = 134058 Score = 65.9 bits (33), Expect = 1e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||| |||||||| |||||||||||||||||| Sbjct: 38357 cttcttgaggtgagtgtgccacacgttcttgatctcgttg 38396
>dbj|AK109011.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H11, full insert sequence Length = 1326 Score = 65.9 bits (33), Expect = 1e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||| |||||||| |||||||||||||||||| Sbjct: 594 cttcttgaggtgagtgtgccacacgttcttgatctcgttg 555
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 65.9 bits (33), Expect = 1e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||| |||||||| |||||||||||||||||| Sbjct: 17418402 cttcttgaggtgagtgtgccacacgttcttgatctcgttg 17418441
>ref|XM_466825.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 466 cgcttcttgaggtgagtgtgccacacattcttgatctcgttg 425 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 157 tgtccaccgtcattgcaagtgtntncgaccaaaagctgtcctcaatntgaaactcctcc 215 |||||||||||||||| || || | |||||| |||||||| || || || ||||||||| Sbjct: 750 tgtccaccgtcattgccagcgtctccgaccagaagctgtcgtcgatctggaactcctcc 692
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence Length = 143157 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||| ||| |||||||||||||||||| Sbjct: 42881 cgcttcttgaggtgcgtgttccagacgttcttgatctcgttg 42922
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||| ||| |||||||||||||||||| Sbjct: 139951 cgcttcttgaggtgcgtgttccagacgttcttgatctcgttg 139992
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 24897842 cgcttcttgaggtgagtgtgccacacattcttgatctcgttg 24897883 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Plus Query: 157 tgtccaccgtcattgcaagtgtntncgaccaaaagctgtcctcaatntgaaactcctcc 215 |||||||||||||||| || || | |||||| |||||||| || || || ||||||||| Sbjct: 24897558 tgtccaccgtcattgccagcgtctccgaccagaagctgtcgtcgatctggaactcctcc 24897616 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 28577904 cttcttcaggtgggtgttccacacgttcttgatctcgttg 28577943 Score = 44.1 bits (22), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Minus Query: 406 gcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||| |||| ||| |||||||||||||||| Sbjct: 25798352 gcttcttgaggtgagtgttccaatagttcttgatctcgttg 25798312 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||||| ||| |||||||||||||||| Sbjct: 31744105 cttcttcaggtgtgtgttccagtagttcttgatctcgttg 31744144
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 59125 cgcttcttgaggtgagtgtgccacacattcttgatctcgttg 59166 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Plus Query: 157 tgtccaccgtcattgcaagtgtntncgaccaaaagctgtcctcaatntgaaactcctcc 215 |||||||||||||||| || || | |||||| |||||||| || || || ||||||||| Sbjct: 58841 tgtccaccgtcattgccagcgtctccgaccagaagctgtcgtcgatctggaactcctcc 58899
>dbj|AK112056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C03, full insert sequence Length = 1038 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 466 cgcttcttgaggtgagtgtgccacacattcttgatctcgttg 425 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 157 tgtccaccgtcattgcaagtgtntncgaccaaaagctgtcctcaatntgaaactcctcc 215 |||||||||||||||| || || | |||||| |||||||| || || || ||||||||| Sbjct: 750 tgtccaccgtcattgccagcgtctccgaccagaagctgtcgtcgatctggaactcctcc 692
>dbj|AK111960.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D02, full insert sequence Length = 1637 Score = 61.9 bits (31), Expect = 2e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||| ||| |||||||||||||||||| Sbjct: 477 cgcttcttgaggtgcgtgttccagacgttcttgatctcgttg 436
>ref|XM_483052.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1074 Score = 54.0 bits (27), Expect = 4e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||| ||| | |||||||||||||||| Sbjct: 344 cgcttcttgaggtgcgtgttccagaagttcttgatctcgttg 303
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 54.0 bits (27), Expect = 4e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||| ||| | |||||||||||||||| Sbjct: 24045196 cgcttcttgaggtgcgtgttccagaagttcttgatctcgttg 24045237
>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0481F05 Length = 139739 Score = 54.0 bits (27), Expect = 4e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||||||||| |||| ||| | |||||||||||||||| Sbjct: 72596 cgcttcttgaggtgcgtgttccagaagttcttgatctcgttg 72637
>ref|NM_113226.3| Arabidopsis thaliana DNA binding / transcription factor AT3G23250 transcript variant AT3G23250.1 mRNA, complete cds Length = 1158 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 446 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 402
>ref|NM_001035670.1| Arabidopsis thaliana DNA binding AT3G23250 transcript variant AT3G23250.2 mRNA, complete cds Length = 1421 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 709 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 665
>gb|AY550296.1| Arabidopsis thaliana MYB transcription factor (At3g23250) mRNA, complete cds Length = 858 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 348 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 304
>emb|Y14207.1|ATY14207 A.thaliana mRNA for AtMYB15 R2R3-MYB transcription factor Length = 1046 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 393 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 349
>emb|X90384.1|ATY19GENE A.thaliana DNA for Y19 gene Length = 2973 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 2924 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 2880
>emb|BX823624.1|CNS0A5AL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS59ZC10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1097 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 446 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 402
>dbj|AK176693.1| Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-23-N24 Length = 1228 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 631 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 587
>dbj|AK176617.1| Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-14-I20 Length = 1228 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 631 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 587
>dbj|AB025608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15 Length = 83689 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 ||||| |||||| | ||| |||||||| ||||||||||||||||| Sbjct: 68875 gagtctcttcttcaagtgagtgtgccatacgttcttgatctcgtt 68831
>ref|XM_467269.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1528 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 420 cttcttcaggtgggtgttccacacgttcttgatctcgttg 381
>ref|XM_506902.1| PREDICTED Oryza sativa (japonica cultivar-group), P0017H11.31 mRNA Length = 1664 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 517 cttcttcaggtgggtgttccacacgttcttgatctcgttg 478
>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1053A04 Length = 144321 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 41917 cttcttcaggtgggtgttccacacgttcttgatctcgttg 41956
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 146745 cttcttcaggtgggtgttccacacgttcttgatctcgttg 146784
>dbj|AK111933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-B10, full insert sequence Length = 1528 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 420 cttcttcaggtgggtgttccacacgttcttgatctcgttg 381
>dbj|AK111720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030I19, full insert sequence Length = 1665 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 518 cttcttcaggtgggtgttccacacgttcttgatctcgttg 479
>emb|X78845.1|ZM1G12 Z.Mays Zm1 gene, introns 1 and 2 Length = 3270 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||| |||| ||| |||||||||||||||||| Sbjct: 1517 cttcttcaggtgcgtgttccacacgttcttgatctcgttg 1478
>ref|NM_104495.1| Arabidopsis thaliana DNA binding / transcription factor AT1G56160 mRNA, complete cds Length = 1034 Score = 46.1 bits (23), Expect = 0.097 Identities = 40/46 (86%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||| || |||| ||| ||||| |||||||||||| Sbjct: 354 gagtcgtttcttgagatgcgtgttccacacgtttttgatctcgttg 309
>ref|NM_112118.2| Arabidopsis thaliana DNA binding / transcription factor AT3G12820 mRNA, complete cds Length = 890 Score = 46.1 bits (23), Expect = 0.097 Identities = 37/42 (88%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||| || |||| ||| || ||||||||||||||| Sbjct: 350 cgcttcttgagatgagtgttccatacattcttgatctcgttg 309
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 263 ggtggcggacgacgagatgggtt 285 ||||||||||||||||||||||| Sbjct: 817851 ggtggcggacgacgagatgggtt 817829
>gb|AY519586.1| Arabidopsis thaliana MYB transcription factor (At3g12820) mRNA, complete cds Length = 720 Score = 46.1 bits (23), Expect = 0.097 Identities = 37/42 (88%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||| || |||| ||| || ||||||||||||||| Sbjct: 350 cgcttcttgagatgagtgttccatacattcttgatctcgttg 309
>gb|AF470089.1| Zea mays P-type R2R3 Myb protein (Myb48) gene, partial cds Length = 1419 Score = 46.1 bits (23), Expect = 0.097 Identities = 37/42 (88%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| ||||||| |||| ||| | |||||||||||||||| Sbjct: 1291 cgcttcctgaggtgcgtgttccaaaagttcttgatctcgttg 1250
>gb|AC009894.2| Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete sequence Length = 96489 Score = 46.1 bits (23), Expect = 0.097 Identities = 40/46 (86%) Strand = Plus / Plus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||| || |||| ||| ||||| |||||||||||| Sbjct: 6868 gagtcgtttcttgagatgcgtgttccacacgtttttgatctcgttg 6913
>gb|AC069159.8|AC069159 Arabidopsis thaliana chromosome 1 BAC F14G9 genomic sequence, complete sequence Length = 111481 Score = 46.1 bits (23), Expect = 0.097 Identities = 40/46 (86%) Strand = Plus / Plus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||| || |||| ||| ||||| |||||||||||| Sbjct: 85311 gagtcgtttcttgagatgcgtgttccacacgtttttgatctcgttg 85356
>gb|DQ108717.1| Arabidopsis thaliana clone 126147 mRNA sequence Length = 1197 Score = 46.1 bits (23), Expect = 0.097 Identities = 40/46 (86%) Strand = Plus / Plus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||| || |||| ||| ||||| |||||||||||| Sbjct: 1032 gagtcgtttcttgagatgcgtgttccacacgtttttgatctcgttg 1077
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21 Length = 79125 Score = 46.1 bits (23), Expect = 0.097 Identities = 37/42 (88%) Strand = Plus / Plus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||| || |||| ||| || ||||||||||||||| Sbjct: 59610 cgcttcttgagatgagtgttccatacattcttgatctcgttg 59651
>gb|AF062905.1|AF062905 Arabidopsis thaliana putative transcription factor (MYB72) mRNA, partial cds Length = 830 Score = 46.1 bits (23), Expect = 0.097 Identities = 40/46 (86%) Strand = Plus / Minus Query: 401 gagtcgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||| || |||| ||| ||||| |||||||||||| Sbjct: 135 gagtcgtttcttgagatgcgtgttccacacgtttttgatctcgttg 90
>gb|AF062862.1|AF062862 Arabidopsis thaliana putative transcription factor (MYB10) mRNA, partial cds Length = 703 Score = 46.1 bits (23), Expect = 0.097 Identities = 37/42 (88%) Strand = Plus / Minus Query: 405 cgcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||| || |||| ||| || ||||||||||||||| Sbjct: 140 cgcttcttgagatgagtgttccatacattcttgatctcgttg 99
>gb|DQ277686.1| Vitis vinifera isolate GNF21 MYB-like protein mRNA, partial cds Length = 292 Score = 46.1 bits (23), Expect = 0.097 Identities = 25/26 (96%) Strand = Plus / Minus Query: 421 tgtgccanacgttcttgatctcgttg 446 ||||||| |||||||||||||||||| Sbjct: 292 tgtgccagacgttcttgatctcgttg 267
>ref|XM_466994.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1399 Score = 44.1 bits (22), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Minus Query: 406 gcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||| |||| ||| |||||||||||||||| Sbjct: 463 gcttcttgaggtgagtgttccaatagttcttgatctcgttg 423
>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0079P23, complete sequence Length = 125090 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 cggtggcggacgacgagatggg 283 |||||||||||||||||||||| Sbjct: 38172 cggtggcggacgacgagatggg 38193
>gb|AF470084.1| Zea mays P-type R2R3 Myb protein (Myb34) gene, partial cds Length = 2440 Score = 44.1 bits (22), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Minus Query: 406 gcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||| |||| ||| |||||||||||||||| Sbjct: 2155 gcttcttgaggtgcgtgttccagtagttcttgatctcgttg 2115
>gb|AF474116.1| Zea mays typical P-type R2R3 Myb protein (Myb3) gene, partial cds Length = 2138 Score = 44.1 bits (22), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Minus Query: 406 gcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||| |||| ||| |||||||||||||||| Sbjct: 2006 gcttcttgaggtgcgtgttccagtagttcttgatctcgttg 1966
>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11, complete sequence Length = 199348 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 cggtggcggacgacgagatggg 283 |||||||||||||||||||||| Sbjct: 186389 cggtggcggacgacgagatggg 186410
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 cggtggcggacgacgagatggg 283 |||||||||||||||||||||| Sbjct: 25099708 cggtggcggacgacgagatggg 25099729 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 cggtggcggacgacgagatggg 283 |||||||||||||||||||||| Sbjct: 25057341 cggtggcggacgacgagatggg 25057362 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||||||| ||| ||||||||| |||||| Sbjct: 19906432 cttcttgaggtgtgtgttccagtagttcttgatgtcgttg 19906471
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 44.1 bits (22), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Minus Query: 406 gcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||| |||| ||| |||||||||||||||| Sbjct: 44958 gcttcttgaggtgagtgttccaatagttcttgatctcgttg 44918
>emb|X96750.1|OSMYB71 O.sativa myb7 gene, clone myb71 Length = 1727 Score = 44.1 bits (22), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Minus Query: 406 gcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||| |||| ||| |||||||||||||||| Sbjct: 1629 gcttcttgaggtgagtgttccaatagttcttgatctcgttg 1589
>dbj|AK108621.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D04, full insert sequence Length = 1399 Score = 44.1 bits (22), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Minus Query: 406 gcttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||| |||| ||| |||||||||||||||| Sbjct: 463 gcttcttgaggtgagtgttccaatagttcttgatctcgttg 423
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 cggtggcggacgacgagatggg 283 |||||||||||||||||||||| Sbjct: 25410727 cggtggcggacgacgagatggg 25410748 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 cggtggcggacgacgagatggg 283 |||||||||||||||||||||| Sbjct: 25368931 cggtggcggacgacgagatggg 25368952 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||||||| ||| ||||||||| |||||| Sbjct: 20191411 cttcttgaggtgtgtgttccagtagttcttgatgtcgttg 20191450
>ref|XM_467854.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1134 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||||| ||| |||||||||||||||| Sbjct: 342 cttcttcaggtgtgtgttccagtagttcttgatctcgttg 303
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||||||| ||| ||||||||| |||||| Sbjct: 83499 cttcttgaggtgtgtgttccagtagttcttgatgtcgttg 83538
>dbj|AB073017.1| Vitis labrusca x Vitis vinifera VlmybB1-2 mRNA for myb-related transcription factor VlMYBB1-2, complete cds Length = 1230 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||||||||| || || || ||||||||| Sbjct: 400 cttcttcaggtgtgtgtgccagacattttttatctcgttg 361
>dbj|AB073016.1| Vitis labrusca x Vitis vinifera VlmybB1-1 mRNA for myb-related transcription factor VlMYBB1-1, complete cds Length = 1250 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||||||||| || || || ||||||||| Sbjct: 391 cttcttcaggtgtgtgtgccagacattttttatctcgttg 352
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||| |||||||| ||| |||||||||||||||| Sbjct: 8262564 cttcttgatgtgtgtgttccagtggttcttgatctcgttg 8262525 Score = 40.1 bits (20), Expect = 6.0 Identities = 34/39 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 |||| ||||||| |||| ||| | ||||||||||||||| Sbjct: 6251362 cttcctgaggtgggtgttccagaagttcttgatctcgtt 6251324
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||| |||||||| ||| |||||||||||||||| Sbjct: 154927 cttcttgatgtgtgtgttccagtggttcttgatctcgttg 154888
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||| |||||||| ||| |||||||||||||||| Sbjct: 56069 cttcttgatgtgtgtgttccagtggttcttgatctcgttg 56030
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||| |||||||||| ||| |||||||||||||||| Sbjct: 39903 cttcttcaggtgtgtgttccagtagttcttgatctcgttg 39942
>dbj|AK110844.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B09, full insert sequence Length = 1464 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 ||||||||||||||||| ||| ||||||||| |||||| Sbjct: 535 cttcttgaggtgtgtgttccagtagttcttgatgtcgttg 496
>dbj|AK107483.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C06, full insert sequence Length = 1163 Score = 42.1 bits (21), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgttg 446 |||||||| |||||||| ||| |||||||||||||||| Sbjct: 520 cttcttgatgtgtgtgttccagtggttcttgatctcgttg 481
>ref|NM_101514.2| Arabidopsis thaliana DNA binding / transcription factor AT1G16490 mRNA, complete cds Length = 1180 Score = 40.1 bits (20), Expect = 6.0 Identities = 31/35 (88%) Strand = Plus / Minus Query: 408 ttcttgaggtgtgtgtgccanacgttcttgatctc 442 |||||||| ||||| ||||| || ||||||||||| Sbjct: 498 ttcttgagatgtgtatgccacacattcttgatctc 464
>gb|AF470058.1| Sorghum bicolor P-type R2R3 Myb protein (Myb4) gene, partial cds Length = 1958 Score = 40.1 bits (20), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 420 gtgtgccanacgttcttgatctcgttg 446 |||| ||| |||||||||||||||||| Sbjct: 1911 gtgttccagacgttcttgatctcgttg 1885
>gb|AY085461.1| Arabidopsis thaliana clone 152630 mRNA, complete sequence Length = 1183 Score = 40.1 bits (20), Expect = 6.0 Identities = 31/35 (88%) Strand = Plus / Minus Query: 408 ttcttgaggtgtgtgtgccanacgttcttgatctc 442 |||||||| ||||| ||||| || ||||||||||| Sbjct: 509 ttcttgagatgtgtatgccacacattcttgatctc 475
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 40.1 bits (20), Expect = 6.0 Identities = 34/39 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 |||| ||||||| |||| ||| | ||||||||||||||| Sbjct: 165181 cttcctgaggtgggtgttccagaagttcttgatctcgtt 165143
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 40.1 bits (20), Expect = 6.0 Identities = 34/39 (87%) Strand = Plus / Minus Query: 407 cttcttgaggtgtgtgtgccanacgttcttgatctcgtt 445 |||| ||||||| |||| ||| | ||||||||||||||| Sbjct: 45438 cttcctgaggtgggtgttccagaagttcttgatctcgtt 45400
>gb|AF061446.1|AF061446 Chromobacterium violaceum polyhydroxyalkanoate synthase (phaC) gene, complete cds; 3-ketothiolase (phaA) gene, partial cds; and unknown gene Length = 2946 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 71 gaagtccacctcgtcgttgctggacgag 98 |||| |||||||| |||||||||||||| Sbjct: 290 gaagcccacctcggcgttgctggacgag 263
>gb|AC006341.2|F3O9 Arabidopsis thaliana chromosome 1 BAC F3O9 sequence, complete sequence Length = 114498 Score = 40.1 bits (20), Expect = 6.0 Identities = 31/35 (88%) Strand = Plus / Plus Query: 408 ttcttgaggtgtgtgtgccanacgttcttgatctc 442 |||||||| ||||| ||||| || ||||||||||| Sbjct: 85345 ttcttgagatgtgtatgccacacattcttgatctc 85379
>gb|AF062893.1|AF062893 Arabidopsis thaliana putative transcription factor (MYB58) mRNA, partial cds Length = 824 Score = 40.1 bits (20), Expect = 6.0 Identities = 31/35 (88%) Strand = Plus / Minus Query: 408 ttcttgaggtgtgtgtgccanacgttcttgatctc 442 |||||||| ||||| ||||| || ||||||||||| Sbjct: 131 ttcttgagatgtgtatgccacacattcttgatctc 97
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 71 gaagtccacctcgtcgttgctggacgag 98 |||| |||||||| |||||||||||||| Sbjct: 3022426 gaagcccacctcggcgttgctggacgag 3022399 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,103,830 Number of Sequences: 3902068 Number of extensions: 2103830 Number of successful extensions: 34259 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33851 Number of HSP's gapped (non-prelim): 408 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
