| Clone Name | rbags20c08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY224526.1| Oryza sativa (japonica cultivar-group) isolate 20960 putative receptor protein kinase mRNA, partial cds Length = 1185 Score = 504 bits (254), Expect = e-139 Identities = 434/494 (87%) Strand = Plus / Minus Query: 241 ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcgatt 300 |||||||||||||| ||||||||||||| ||| ||| |||| |||||| |||||| | Sbjct: 1175 ccgctgtatcctgagctgtagccactgtagccgcctctcttggttgtcctgctctcgact 1116 Query: 301 tcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctcgtc 360 || || ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || Sbjct: 1115 tcctgggtttgttggccctcgctgcttgatgcagagggtatctggccatactcgctggtt 1056 Query: 361 ggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaacttc 420 || ||||||||||| |||||||| | | ||| | ||||| ||||||||| |||||||| Sbjct: 1055 ggtgcgctgtattgactgctcgtatcattattgttggtaaaagccatcttcctgaacttc 996 Query: 421 ttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaaaag 480 ||||||||||||||||| || |||||||||||||| || |||||||| ||||||||| || Sbjct: 995 ttcatgtcctcgttgtattggccagaatcatagtcagagctgctgtacgatccaaaatag 936 Query: 481 cggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttctaag 540 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 935 cggctgtgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttccaaa 876 Query: 541 gcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagca 600 ||||| |||||||| ||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 875 gcccggacaacctggctcatgcgtgggcgacgacgagcggaatggcgtacgcatgcagct 816 Query: 601 gcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagcatcc 660 ||||| || |||||||| || |||||||| ||||||||||||||||| || |||| ||| Sbjct: 815 gcacaagcaatcattctcgccatctcattgggattgaaatccttcccaagccgaggatct 756 Query: 661 actagctcatcatagttaccatcctcaagtgctcgcatcagtaaaggtcttgcccagtca 720 |||| ||| || |||||||||| |||||||||| ||||||||||||| |||||||||||| Sbjct: 755 actaactcctcgtagttaccattctcaagtgcttgcatcagtaaaggccttgcccagtca 696 Query: 721 accaagctgtcatc 734 |||||||||||||| Sbjct: 695 accaagctgtcatc 682
>gb|AY108241.1| Zea mays PCO134818 mRNA sequence Length = 1053 Score = 468 bits (236), Expect = e-128 Identities = 434/497 (87%), Gaps = 6/497 (1%) Strand = Plus / Minus Query: 241 ccgctgtatcctgaactgtagccac---tgtggccacctttcttcattgtccccgtctcg 297 |||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||| Sbjct: 848 ccgctgtatcctgagctgtagccaccactgtagccacctttcttcattgcacccgactcc 789 Query: 298 atttcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctc 357 || ||||| || || ||||||||||||||||||||||| |||||||| ||||| || || Sbjct: 788 atctcttgcgtctggtggccctcgctgcttgatgcagacggtatctgtccatattcactg 729 Query: 358 gtcggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaac 417 || |||||||||||||||||||| || |||| || || | || ||||||||||||||| Sbjct: 728 gttggcgcgctgtattggctgctggtatagttgtt-gttg--aatgccatcttcttgaac 672 Query: 418 ttcttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaa 477 ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| Sbjct: 671 ttcttcatgtcctcgttgtactggccagaatcgtaatcggagctgctgtatgacccaaag 612 Query: 478 aagcggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttct 537 ||||||||||| ||||||||||||||||||||||| |||||||||||||| | || || Sbjct: 611 aagcggctatggccaggccgaacaccttcattaaggtcctccaaagacacattgccctcc 552 Query: 538 aaggcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgca 597 || |||||||| ||||||||||| || || |||||||| || |||||||||||||||||| Sbjct: 551 aaagcccgaacgacctgactcatacgtggccgacgacgtgcagaatggcgtacacatgca 492 Query: 598 gcagcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagca 657 || ||||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||| | Sbjct: 491 gctgcacaggctatcattcttgccatctcattaggattgaagtcctttcccagccgagga 432 Query: 658 tccactagctcatcatagttaccatcctcaagtgctcgcatcagtaaaggtcttgcccag 717 ||||||| ||||||| | ||||||||||||||||||||||||||| || ||||||||| Sbjct: 431 tccactaaagcatcatattcaccatcctcaagtgctcgcatcagtaatggccttgcccag 372 Query: 718 tcaaccaagctgtcatc 734 ||||||||||||||||| Sbjct: 371 tcaaccaagctgtcatc 355
>gb|BT016904.1| Zea mays clone Contig737 mRNA sequence Length = 1195 Score = 444 bits (224), Expect = e-121 Identities = 431/497 (86%), Gaps = 6/497 (1%) Strand = Plus / Plus Query: 241 ccgctgtatcctgaactgtagccac---tgtggccacctttcttcattgtccccgtctcg 297 |||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||| Sbjct: 254 ccgctgtatcctgagctgtagccaccactgtagccacctttcttcattgcacccgactcc 313 Query: 298 atttcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctc 357 || ||||| || || |||||||||||||||||||||| |||||||| ||||| || || Sbjct: 314 atctcttgcgtctgggggccctcgctgcttgatgcagacggtatctgtccatattcactg 373 Query: 358 gtcggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaac 417 || |||||||||||||||||||| || |||| || || | || ||||||||||||||| Sbjct: 374 gttggcgcgctgtattggctgctggtatagttgtt-gttg--aatgccatcttcttgaac 430 Query: 418 ttcttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaa 477 ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| Sbjct: 431 ttcttcatgtcctcgttgtactggccagaatcgtaatcggagctgctgtatgacccaaag 490 Query: 478 aagcggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttct 537 ||||||||||| ||||||||||||||||||||||| ||||||||||||| | || || Sbjct: 491 aagcggctatggccaggccgaacaccttcattaagggcctccaaagacacattgccctcc 550 Query: 538 aaggcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgca 597 || |||||||| ||||||||||| || || |||||||| || |||||||||||||||||| Sbjct: 551 aaagcccgaacgacctgactcatacgtggccgacgacgtgcagaatggcgtacacatgca 610 Query: 598 gcagcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagca 657 || ||||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||| | Sbjct: 611 gctgcacaggctatcattcttgccatctcattaggattgaagtcctttcccagccgagga 670 Query: 658 tccactagctcatcatagttaccatcctcaagtgctcgcatcagtaaaggtcttgcccag 717 ||||||| |||||| | ||||||||||||||||||||||||||| || ||||||||| Sbjct: 671 tccactaaagaatcatattcaccatcctcaagtgctcgcatcagtaatggccttgcccag 730 Query: 718 tcaaccaagctgtcatc 734 ||||||||||||||||| Sbjct: 731 tcaaccaagctgtcatc 747
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012L23, complete sequence Length = 121659 Score = 323 bits (163), Expect = 5e-85 Identities = 277/315 (87%) Strand = Plus / Plus Query: 241 ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcgatt 300 |||||||||||||| ||||||||||||| ||| ||| |||| |||||| |||||| | Sbjct: 54723 ccgctgtatcctgagctgtagccactgtagccgcctctcttggttgtcctgctctcgact 54782 Query: 301 tcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctcgtc 360 || || ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || Sbjct: 54783 tcctgggtttgttggccctcgctgcttgatgcagagggtatctggccatactcgctggtt 54842 Query: 361 ggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaacttc 420 || ||||||||||| |||||||| | | ||| | ||||| ||||||||| |||||||| Sbjct: 54843 ggtgcgctgtattgactgctcgtatcattattgttggtaaaagccatcttcctgaacttc 54902 Query: 421 ttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaaaag 480 ||||||||||||||||| || |||||||||||||| || |||||||| ||||||||| || Sbjct: 54903 ttcatgtcctcgttgtattggccagaatcatagtcagagctgctgtacgatccaaaatag 54962 Query: 481 cggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttctaag 540 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 54963 cggctgtgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttccaaa 55022 Query: 541 gcccgaacaacctga 555 ||||| ||||||||| Sbjct: 55023 gcccggacaacctga 55037 Score = 153 bits (77), Expect = 1e-33 Identities = 143/165 (86%) Strand = Plus / Plus Query: 550 acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609 ||||| ||||| || ||||||||||| || ||||||||||| |||||||| ||||| || Sbjct: 55219 acctggctcatgcgtgggcgacgacgagcggaatggcgtacgcatgcagctgcacaagca 55278 Query: 610 atcattctggcaatctcattaggattgaaatccttccccagacgagcatccactagctca 669 |||||||| || |||||||| ||||||||||||||||| || |||| ||| |||| ||| Sbjct: 55279 atcattctcgccatctcattgggattgaaatccttcccaagccgaggatctactaactcc 55338 Query: 670 tcatagttaccatcctcaagtgctcgcatcagtaaaggtcttgcc 714 || |||||||||| |||||||||| ||||||||||||| |||||| Sbjct: 55339 tcgtagttaccattctcaagtgcttgcatcagtaaaggccttgcc 55383 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 103 tatgaaagaatcaacaactgcagctaccagaagctatacttc 144 ||||||||||||||||| || |||||||| |||||||||||| Sbjct: 54552 tatgaaagaatcaacaattgtagctaccaaaagctatacttc 54593 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 713 cccagtcaaccaagctgtcatc 734 |||||||||||||||||||||| Sbjct: 55819 cccagtcaaccaagctgtcatc 55840
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 323 bits (163), Expect = 5e-85 Identities = 277/315 (87%) Strand = Plus / Plus Query: 241 ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcgatt 300 |||||||||||||| ||||||||||||| ||| ||| |||| |||||| |||||| | Sbjct: 7194709 ccgctgtatcctgagctgtagccactgtagccgcctctcttggttgtcctgctctcgact 7194768 Query: 301 tcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctcgtc 360 || || ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || Sbjct: 7194769 tcctgggtttgttggccctcgctgcttgatgcagagggtatctggccatactcgctggtt 7194828 Query: 361 ggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaacttc 420 || ||||||||||| |||||||| | | ||| | ||||| ||||||||| |||||||| Sbjct: 7194829 ggtgcgctgtattgactgctcgtatcattattgttggtaaaagccatcttcctgaacttc 7194888 Query: 421 ttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaaaag 480 ||||||||||||||||| || |||||||||||||| || |||||||| ||||||||| || Sbjct: 7194889 ttcatgtcctcgttgtattggccagaatcatagtcagagctgctgtacgatccaaaatag 7194948 Query: 481 cggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttctaag 540 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 7194949 cggctgtgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttccaaa 7195008 Query: 541 gcccgaacaacctga 555 ||||| ||||||||| Sbjct: 7195009 gcccggacaacctga 7195023 Score = 153 bits (77), Expect = 1e-33 Identities = 143/165 (86%) Strand = Plus / Plus Query: 550 acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609 ||||| ||||| || ||||||||||| || ||||||||||| |||||||| ||||| || Sbjct: 7195205 acctggctcatgcgtgggcgacgacgagcggaatggcgtacgcatgcagctgcacaagca 7195264 Query: 610 atcattctggcaatctcattaggattgaaatccttccccagacgagcatccactagctca 669 |||||||| || |||||||| ||||||||||||||||| || |||| ||| |||| ||| Sbjct: 7195265 atcattctcgccatctcattgggattgaaatccttcccaagccgaggatctactaactcc 7195324 Query: 670 tcatagttaccatcctcaagtgctcgcatcagtaaaggtcttgcc 714 || |||||||||| |||||||||| ||||||||||||| |||||| Sbjct: 7195325 tcgtagttaccattctcaagtgcttgcatcagtaaaggccttgcc 7195369 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 103 tatgaaagaatcaacaactgcagctaccagaagctatacttc 144 ||||||||||||||||| || |||||||| |||||||||||| Sbjct: 7194538 tatgaaagaatcaacaattgtagctaccaaaagctatacttc 7194579 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 713 cccagtcaaccaagctgtcatc 734 |||||||||||||||||||||| Sbjct: 7195805 cccagtcaaccaagctgtcatc 7195826
>gb|AY108243.1| Zea mays PCO134814 mRNA sequence Length = 1016 Score = 315 bits (159), Expect = 1e-82 Identities = 413/497 (83%), Gaps = 3/497 (0%) Strand = Plus / Minus Query: 241 ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcg--- 297 ||||||||||| || |||||||| |||| |||||||||||||| || |||| ||| Sbjct: 829 ccgctgtatccggagctgtagccgctgtagccacctttcttcactgcacccgactcctcc 770 Query: 298 atttcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctc 357 || || || || || ||||||||||||||||| |||| || | ||| || || || || Sbjct: 769 atctcctgcgtctggcggccctcgctgcttgatccagacggcacctggccgtattcactg 710 Query: 358 gtcggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaac 417 || |||||||||||||||||||| |||||| || | | || ||| ||||| ||||| Sbjct: 709 gttggcgcgctgtattggctgctggtgtaggtgttgttattgaacgccgtcttcctgaac 650 Query: 418 ttcttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaa 477 |||| ||||||||||||||||||||| ||||| || || || ||||| ||||| ||||| Sbjct: 649 ttctgcatgtcctcgttgtactgcccggaatcgtaatcagagctgctatatgacccaaag 590 Query: 478 aagcggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttct 537 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 589 aagcggctatggccaggtcgaacaccttcattaaggtcctccaaagacacgtcgccttcc 530 Query: 538 aaggcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgca 597 | |||||||| |||||||||||||| || |||||||| || ||||||||||| || ||| Sbjct: 529 agagcccgaacgacctgactcattcgtggccgacgacgtgcggaatggcgtacgcacgca 470 Query: 598 gcagcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagca 657 || ||||| ||||||||||| || ||||| ||||||||||| ||||| || || |||| | Sbjct: 469 gccgcacaggctatcattcttgccatctcgttaggattgaagtcctttccgagccgagga 410 Query: 658 tccactagctcatcatagttaccatcctcaagtgctcgcatcagtaaaggtcttgcccag 717 ||||| | ||||||| | ||||||||| || |||| ||||||||| || ||||||||| Sbjct: 409 tccaccaaagcatcatattcaccatcctcgagcgctctcatcagtaatggccttgcccag 350 Query: 718 tcaaccaagctgtcatc 734 ||||||||||||||||| Sbjct: 349 tcaaccaagctgtcatc 333
>ref|NM_188575.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1794 Score = 149 bits (75), Expect = 2e-32 Identities = 222/271 (81%) Strand = Plus / Minus Query: 464 tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523 |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| | Sbjct: 1561 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 1502 Query: 524 acacgtcaccttctaaggcccgaacaacctgactcattcgagggcgacgacgggctgaat 583 |||| || ||||| ||||||||||||||||| ||||| || ||||| || || || |||| Sbjct: 1501 acacatcgccttccaaggcccgaacaacctggctcatccgtgggcgtcggcgtgcagaat 1442 Query: 584 ggcgtacacatgcagcagcacatgctatcattctggcaatctcattaggattgaaatcct 643 |||||||||| ||||| ||||| || ||||| || || ||||| ||| |||| | |||| Sbjct: 1441 ggcgtacacaagcagctgcacaagcaatcatcctcgccatctcgttaccattgtactcct 1382 Query: 644 tccccagacgagcatccactagctcatcatagttaccatcctcaagtgctcgcatcagta 703 || || || | |||||||| ||||||| || ||||| || ||||||||||| || Sbjct: 1381 gtcctagccgtggatccactaaagcatcataattgccatcatctgatgctcgcatcatta 1322 Query: 704 aaggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||| ||||||||||||||||| Sbjct: 1321 aaggccttgcccaatcaaccaagctgtcatc 1291
>dbj|AK103247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123K23, full insert sequence Length = 2307 Score = 149 bits (75), Expect = 2e-32 Identities = 222/271 (81%) Strand = Plus / Minus Query: 464 tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523 |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| | Sbjct: 1843 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 1784 Query: 524 acacgtcaccttctaaggcccgaacaacctgactcattcgagggcgacgacgggctgaat 583 |||| || ||||| ||||||||||||||||| ||||| || ||||| || || || |||| Sbjct: 1783 acacatcgccttccaaggcccgaacaacctggctcatccgtgggcgtcggcgtgcagaat 1724 Query: 584 ggcgtacacatgcagcagcacatgctatcattctggcaatctcattaggattgaaatcct 643 |||||||||| ||||| ||||| || ||||| || || ||||| ||| |||| | |||| Sbjct: 1723 ggcgtacacaagcagctgcacaagcaatcatcctcgccatctcgttaccattgtactcct 1664 Query: 644 tccccagacgagcatccactagctcatcatagttaccatcctcaagtgctcgcatcagta 703 || || || | |||||||| ||||||| || ||||| || ||||||||||| || Sbjct: 1663 gtcctagccgtggatccactaaagcatcataattgccatcatctgatgctcgcatcatta 1604 Query: 704 aaggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||| ||||||||||||||||| Sbjct: 1603 aaggccttgcccaatcaaccaagctgtcatc 1573
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 464 tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523 |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| | Sbjct: 7041461 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 7041402 Query: 524 acacgtcaccttctaaggcccgaacaacctg 554 |||| || ||||| ||||||||||||||||| Sbjct: 7041401 acacatcgccttccaaggcccgaacaacctg 7041371 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 550 acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609 ||||| ||||| || ||||| || || || |||||||||||||| ||||| ||||| || Sbjct: 7041136 acctggctcatccgtgggcgtcggcgtgcagaatggcgtacacaagcagctgcacaagca 7041077 Query: 610 atcat 614 ||||| Sbjct: 7041076 atcat 7041072
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 464 tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523 |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| | Sbjct: 29041 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 28982 Query: 524 acacgtcaccttctaaggcccgaacaacctg 554 |||| || ||||| ||||||||||||||||| Sbjct: 28981 acacatcgccttccaaggcccgaacaacctg 28951 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 550 acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609 ||||| ||||| || ||||| || || || |||||||||||||| ||||| ||||| || Sbjct: 28716 acctggctcatccgtgggcgtcggcgtgcagaatggcgtacacaagcagctgcacaagca 28657 Query: 610 atcat 614 ||||| Sbjct: 28656 atcat 28652
>dbj|AB110953.1| Nicotiana tabacum NtPERK1 mRNA for PERK1-like protein kinase, partial cds Length = 1083 Score = 48.1 bits (24), Expect = 0.041 Identities = 84/104 (80%) Strand = Plus / Minus Query: 502 ccttcattaagatcctccaaagacacgtcaccttctaaggcccgaacaacctgactcatt 561 |||||||||||||| ||| |||||||| ||||| | || | |||||||||||||| Sbjct: 555 ccttcattaagatcggacaatgacacgtctccttccagagctctgacaacctgactcatg 496 Query: 562 cgagggcgacgacgggctgaatggcgtacacatgcagcagcaca 605 || || ||||| | |||||||| || ||||| ||||||||||| Sbjct: 495 cgtggtcgacgccttgctgaatgacggacacaagcagcagcaca 452
>ref|NM_113366.2| Arabidopsis thaliana ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G24550 mRNA, complete cds Length = 2377 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1643 ggtcgtgcccagtcaactaagctgtcatc 1615
>ref|NM_113365.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G24540 mRNA, complete cds Length = 1530 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||| ||||||||||||||||| Sbjct: 1187 ggtcgtgcccaatcaaccaagctgtcatc 1159
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 tactcgctcgtcggcgcgctg 369 ||||||||||||||||||||| Sbjct: 2589221 tactcgctcgtcggcgcgctg 2589201
>gb|BC075486.1| Xenopus tropicalis MGC89323 protein, mRNA (cDNA clone MGC:89323 IMAGE:6987428), complete cds Length = 4299 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 ccttcattaagatcctccaaa 522 ||||||||||||||||||||| Sbjct: 509 ccttcattaagatcctccaaa 489
>gb|AY536856.1| Arabidopsis thaliana putative protein kinase (At3g24550) mRNA, partial cds Length = 668 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 221 ggtcgtgcccagtcaactaagctgtcatc 193
>gb|AC118755.7| Homo sapiens chromosome 17, clone RP11-55L4, complete sequence Length = 188765 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gagaagtcaaaaagaagaaga 224 ||||||||||||||||||||| Sbjct: 61998 gagaagtcaaaaagaagaaga 62018
>gb|AC021218.9| Homo sapiens BAC clone RP11-525O1 from 7, complete sequence Length = 159482 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 gaactgctgtatgatccaaaa 477 ||||||||||||||||||||| Sbjct: 63366 gaactgctgtatgatccaaaa 63386
>gb|DQ446692.1| Arabidopsis thaliana clone pENTR221-At3g24540 protein kinase family protein (At3g24540) mRNA, complete cds Length = 1783 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||| ||||||||||||||||| Sbjct: 1319 ggtcgtgcccaatcaaccaagctgtcatc 1291
>gb|BT008409.1| Arabidopsis thaliana At3g24600 gene, complete cds Length = 1959 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1490 ggtcgtgcccagtcaactaagctgtcatc 1462
>gb|BT008400.1| Arabidopsis thaliana At3g24550 gene, complete cds Length = 1959 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1490 ggtcgtgcccagtcaactaagctgtcatc 1462
>gb|AY128792.1| Arabidopsis thaliana protein kinase-like protein mRNA, complete cds Length = 2098 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1490 ggtcgtgcccagtcaactaagctgtcatc 1462
>gb|AY093065.1| Arabidopsis thaliana unknown protein (At3g24550) mRNA, complete cds Length = 2190 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1519 ggtcgtgcccagtcaactaagctgtcatc 1491
>ref|XM_689578.1| PREDICTED: Danio rerio similar to regulatory factor X, 5 (influences HLA class II expression) (LOC566305), mRNA Length = 4458 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 agaatcaacaactgcagctaccaga 133 ||||||||||||||||||| ||||| Sbjct: 3857 agaatcaacaactgcagcttccaga 3881
>gb|AY059901.1| Arabidopsis thaliana protein kinase-like protein (MOB24.13) mRNA, complete cds Length = 2188 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1521 ggtcgtgcccagtcaactaagctgtcatc 1493
>gb|AY056788.1| Arabidopsis thaliana AT3g24550/MOB24_8 mRNA, complete cds Length = 2116 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1526 ggtcgtgcccagtcaactaagctgtcatc 1498
>gb|AF370509.1|AF370509 Arabidopsis thaliana protein kinase-like protein (MOB24.13) mRNA, complete cds Length = 2257 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1596 ggtcgtgcccagtcaactaagctgtcatc 1568
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 tactcgctcgtcggcgcgctg 369 ||||||||||||||||||||| Sbjct: 19939056 tactcgctcgtcggcgcgctg 19939036
>gb|AY028699.1| Brassica napus receptor protein kinase PERK1 mRNA, complete cds Length = 2189 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1571 ggtcgtgcccagtcaactaagctgtcatc 1543
>emb|BX823746.1|CNS0A4QX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS71ZE12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2106 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1563 ggtcgtgcccagtcaactaagctgtcatc 1535
>ref|NM_001004970.1| Xenopus tropicalis MGC89323 protein (MGC89323), mRNA Length = 4299 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 ccttcattaagatcctccaaa 522 ||||||||||||||||||||| Sbjct: 509 ccttcattaagatcctccaaa 489
>gb|AY089024.1| Arabidopsis thaliana clone 17909 mRNA, complete sequence Length = 2324 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 706 ggtcttgcccagtcaaccaagctgtcatc 734 |||| |||||||||||| ||||||||||| Sbjct: 1591 ggtcgtgcccagtcaactaagctgtcatc 1563
>gb|AC087501.16| Homo sapiens chromosome 17, clone RP11-565F19, complete sequence Length = 192197 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gagaagtcaaaaagaagaaga 224 ||||||||||||||||||||| Sbjct: 36127 gagaagtcaaaaagaagaaga 36147
>dbj|AK099395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J11, full insert sequence Length = 1857 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 tactcgctcgtcggcgcgctg 369 ||||||||||||||||||||| Sbjct: 270 tactcgctcgtcggcgcgctg 290
>dbj|AK061613.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B07, full insert sequence Length = 1729 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 tactcgctcgtcggcgcgctg 369 ||||||||||||||||||||| Sbjct: 264 tactcgctcgtcggcgcgctg 284
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 tactcgctcgtcggcgcgctg 369 ||||||||||||||||||||| Sbjct: 19865270 tactcgctcgtcggcgcgctg 19865250
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 tactcgctcgtcggcgcgctg 369 ||||||||||||||||||||| Sbjct: 88204 tactcgctcgtcggcgcgctg 88224 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,196,965 Number of Sequences: 3902068 Number of extensions: 6196965 Number of successful extensions: 109121 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108860 Number of HSP's gapped (non-prelim): 254 length of query: 734 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 711 effective length of database: 17,143,297,704 effective search space: 12188884667544 effective search space used: 12188884667544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)