ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20b17 |
|---|---|
| Clone Library Name | barley_pub |
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.21 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 310 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 393 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.21 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 167 VTHSLADFDFHDHRP 211 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.21 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 310 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 393 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.21 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 167 VTHSLADFDFHDHRP 211 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +1 Query: 10 PTAAPPGLAPRVLQRPPRPPTHAGHG 87 P A PPG+ P + PP PP AGHG Sbjct: 250 PGALPPGIPP-AMPPPPMPPGAAGHG 274
>CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isoform 4 (p14ARF)| (p19ARF) Length = 173 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -3 Query: 143 PRKWMALKRATHTRPSGRAPCPA*VGGRGGRCKTRGASPGGAAVG 9 PR+ L+R H+ P+ CP + G G GA+PG A G Sbjct: 121 PRRGAQLRRPRHSHPTRARRCPGGLPGHAG-----GAAPGRGAAG 160
>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)| (Ik3-1) Length = 568 Score = 30.8 bits (68), Expect = 3.2 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 4 SAPTAAPPGLAPRVLQRPPRPPTHA 78 S+P PP L PRVL P +PP A Sbjct: 123 SSPCPLPPSLVPRVLGEPSQPPRSA 147
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 14/50 (28%) Frame = +1 Query: 1 RSAPTAAPPGLA--PRV--------LQRP--PRPPTHAGH--GARPDGRV 108 R PTAAPP A PRV Q P P PP H+G GARP+ R+ Sbjct: 2937 RGQPTAAPPSAASPPRVSLPVRSRQQQSPAIPLPPMHSGSEPGARPEVRL 2986
>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) Length = 1147 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 5/36 (13%) Frame = +1 Query: 10 PTAAPPGLAPRVLQR----PPRP-PTHAGHGARPDG 102 P PPG+ P LQR PPRP P H H P G Sbjct: 858 PLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPG 893
>PLMN_BOVIN (P06868) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 30.0 bits (66), Expect = 5.4 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = -2 Query: 285 PEAGLRCPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKMDGAE 121 P AGL R P K W T R W+ + K+C T AP+ G E Sbjct: 424 PNAGLTMNYCRNPDADKSPWCYTTDPRVRWEFCNLKKCSETPEQVPAAPQAPGVE 478
>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) (Fragment) Length = 1048 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 5/36 (13%) Frame = +1 Query: 10 PTAAPPGLAPRVLQR----PPRP-PTHAGHGARPDG 102 P PPG+ P LQR PPRP P H H P G Sbjct: 751 PLQRPPGMPPPHLQRFPMMPPRPMPPHMMHRGPPPG 786
>PUR4_XANCP (Q8PCQ7) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1348 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 128 ALKRATHTRPSGRAPCPA*VGGRGGRCKTRGASPGG 21 A+K TH P+ AP P G GG + GA+ G Sbjct: 283 AIKVETHNHPTAIAPFPGAATGAGGEIRDEGATGRG 318
>PUR4_XANAC (Q8PGR7) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1348 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 128 ALKRATHTRPSGRAPCPA*VGGRGGRCKTRGASPGG 21 A+K TH P+ AP P G GG + GA+ G Sbjct: 283 AIKVETHNHPTAIAPFPGAATGAGGEIRDEGATGRG 318
>PGMI_AERPE (Q9YE01) Bifunctional phosphoglucose/phosphomannose isomerase| (Glucose-6-phosphate isomerase) (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Mannose-6-phosphate isomerase) (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) Length = 335 Score = 29.6 bits (65), Expect = 7.1 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +1 Query: 19 APPGLAPRVLQ--RPPRPPTHAGHGARPDGRVWVARFSAIHFRG*LIRQVSCYTLLS 183 AP G RV++ RPPRPP H G+G + +A +S G + V C +LLS Sbjct: 57 APQGPEFRVVKDFRPPRPPRHRGYG------LVLASYS-----GNTLETVECGSLLS 102
>PUR4_PSESM (Q886W6) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1298 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 125 LKRATHTRPSGRAPCPA*VGGRGGRCKTRGASPGGA 18 +K TH P+ AP P G GG + GA+ GA Sbjct: 289 MKVETHNHPTAIAPFPGAATGSGGEIRDEGATGRGA 324
>RGMC_RAT (Q8N7M5) Hemojuvelin precursor (Hemochromatosis type 2 protein| homolog) (RGM domain family member C) Length = 422 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = +1 Query: 1 RSAPTAAPPGLAPRVLQRPPRPPTHAGHGARPDGRVWVARFSAIHFR 141 R PTA+PP P + P P T PD + ARFS +H R Sbjct: 117 RQGPTASPPARGPALPGAGPAPLT-------PDPCDYEARFSRLHGR 156
>SRP72_SCHMA (P49965) Signal recognition particle 72 kDa protein (SRP72)| Length = 707 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%) Frame = +1 Query: 10 PTAAPPGLAPRVLQRPPRP------PTHAGHGARPDGRVWVARFSAIHFRG 144 P++ PG P V+ RP R P + G PD W+ R H+RG Sbjct: 595 PSSEDPGAQP-VISRPKRKKRKVRLPKNYQPGVMPDPNRWLPRRERTHYRG 644 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,784,180 Number of Sequences: 219361 Number of extensions: 2074512 Number of successful extensions: 6242 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5607 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6201 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
