Clone Information

BLAST Search Result

Clone Name	rbags20b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC137593.2\| Oryza sativa (Japonica cultiva-group) chromosome ...	149	1e-32
2	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	149	1e-32
3	gb\|AY107797.1\| Zea mays PCO101826 mRNA sequence	96	1e-16
4	gb\|AC115484.2\| Drosophila melanogaster clone BACR06K01, complete...	48	0.029
5	gb\|AC092399.2\| Drosophila melanogaster, chromosome 2L, region 36...	48	0.029
6	gb\|AC092395.1\|AC092395 Drosophila melanogaster, chromosome 2L, r...	48	0.029
7	gb\|AE003649.2\| Drosophila melanogaster chromosome 2L, section 58...	48	0.029
8	gb\|AC112210.2\| Homo sapiens chromosome 3 clone RP11-221D23, comp...	44	0.45
9	gb\|AC092217.1\|AC092217 Drosophila melanogaster, chromosome 2L, r...	44	0.45
10	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	44	0.45
11	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
12	dbj\|AP002845.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
13	gb\|CP000009.1\| Gluconobacter oxydans 621H, complete genome	44	0.45
14	gb\|AE003577.4\| Drosophila melanogaster chromosome 2L, section 14...	44	0.45
15	gb\|AC004371.1\|AC004371 Drosophila melanogaster DNA sequence (P1 ...	44	0.45
16	gb\|AC149782.2\| Bos taurus BAC CH240-6M21 (Children's Hospital O...	42	1.8
17	ref\|XM_752673.1\| Ustilago maydis 521 hypothetical protein (UM016...	42	1.8
18	gb\|AC175208.3\| Cavia porcellus clone CH234-14J14, complete sequence	42	1.8
19	emb\|AL939129.1\|SCO939129 Streptomyces coelicolor A3(2) complete ...	42	1.8
20	emb\|AL121770.1\|SPAC821 S.pombe chromosome I cosmid c821	42	1.8
21	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	42	1.8
22	emb\|X57509.1\|PUPENRPI P.univalens terminal heterochromatin penta...	42	1.8
23	ref\|NM_196097.1\| Oryza sativa (japonica cultivar-group) putative...	40	7.0
24	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	40	7.0
25	gb\|AE017283.1\| Propionibacterium acnes KPA171202, complete genome	40	7.0
26	gb\|AC113514.9\| Mus musculus chromosome 19, clone RP23-475D11, co...	40	7.0
27	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	7.0
28	gb\|AC134879.3\| Homo sapiens BAC clone RP11-295P22 from Y, comple...	40	7.0
29	ref\|XM_534544.2\| PREDICTED: Canis familiaris similar to protein ...	40	7.0
30	ref\|XM_803377.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	7.0
31	ref\|XM_813059.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	7.0
32	gb\|AC146866.6\| Medicago truncatula clone mth2-19a14, complete se...	40	7.0
33	gb\|AC096691.6\| Oryza sativa chromosome 10 BAC OSJNBa0083M08 geno...	40	7.0
34	gb\|AC136932.4\| Homo sapiens chromosome 16 clone CTD-2522B17, com...	40	7.0
35	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	7.0
36	emb\|AJ851756.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	7.0
37	dbj\|BS000654.1\| Pan troglodytes chromosome Y clone:PTB-129E12, c...	40	7.0
38	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	7.0
39	emb\|BX322638.6\| Zebrafish DNA sequence from clone DKEYP-114C5 in...	40	7.0
40	gb\|AC113335.1\| Genomic sequence for Oryza sativa (japonica culti...	40	7.0
41	dbj\|AK158834.1\| Mus musculus visual cortex cDNA, RIKEN full-leng...	40	7.0
42	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	7.0
43	gb\|AC154190.2\| Mus musculus BAC clone RP24-465P16 from chromosom...	40	7.0
44	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	40	7.0
45	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
46	gb\|AC172374.4\| Pan troglodytes BAC clone CH251-119H6 from chromo...	40	7.0
47	gb\|AC150909.3\| Pan troglodytes BAC clone CH251-1056O7 from chrom...	40	7.0
48	gb\|AC156805.2\| Pan troglodytes BAC clone CH251-830G14 from chrom...	40	7.0
49	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	7.0
50	gb\|AE004834.1\| Pseudomonas aeruginosa PAO1, section 395 of 529 o...	40	7.0
51	gb\|AC137499.2\| Homo sapiens chromosome 16 clone RP11-317D10, com...	40	7.0
52	dbj\|BA000035.2\| Corynebacterium efficiens YS-314 DNA, complete g...	40	7.0
53	ref\|XM_308776.2\| Anopheles gambiae str. PEST ENSANGP00000014983 ...	40	7.0
54	emb\|AL583842.40\| Human DNA sequence from clone RP11-417J8 on chr...	40	7.0
55	gb\|AY772007.1\| Nocardioides sp. JS614 putative PAPS reductase ge...	40	7.0
56	emb\|CT030235.12\| Mouse DNA sequence from clone RP23-240F19 on ch...	40	7.0
57	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.0
58	gb\|CP000221.1\| Drosophila melanogaster genomic scaffold 21100002...	40	7.0
59	emb\|AJ401317.1\|SHY401317 Saccharum hybrid cultivar R570 microsat...	40	7.0
60	emb\|X57503.1\|PUPENRPC P.univalens pentameric repeat segment DNA ...	40	7.0

>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0043I04, complete sequence
          Length = 145191

 Score =  149 bits (75), Expect = 1e-32
 Identities = 194/233 (83%), Gaps = 3/233 (1%)
 Strand = Plus / Minus

                                                                         
Query: 177   gcagcacggccatggatttcagccggcaggacatggcgtcggcctccgcggcagcgttct 236
             ||||||| |||||||||||||||  || ||||||||||||||| |||||||| ||||| |
Sbjct: 80917 gcagcaccgccatggatttcagcttgctggacatggcgtcggcgtccgcggcggcgttgt 80858

                                                                         
Query: 237   cccgggcgatgcggctccacctctgctcgccgccg---gagacccggcacgccgtcgcga 293
              ||| ||||  |||| |||||  || ||| ||  |   |||||||||||||||||| |||
Sbjct: 80857 tccgcgcgagccggcgccaccggtggtcgtcggtgtccgagacccggcacgccgtcacga 80798

                                                                         
Query: 294   agtccaggaccttgccgaagatcctgaacatctccacggagtagatcctgtcctggccgg 353
             |||| || ||||||||||||| ||||||||||||||||| |||||   |||||  |||||
Sbjct: 80797 agtcgagcaccttgccgaagaccctgaacatctccacggcgtagacggtgtccgcgccgg 80738

                                                                  
Query: 354   cggcgaacaccgcgttggaatccattggcgcgtccgggtgcgccgacgcctcg 406
             |||||||| | ||||||   ||||| |||||||| ||||||| ||||||||||
Sbjct: 80737 cggcgaacgcggcgttgaggtccatgggcgcgtcggggtgcgacgacgcctcg 80685



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 484   ggtcgcaccacgagacgcagagcatgaacagccgc 518
             ||||||||||||||||||||||||| | |||||||
Sbjct: 80602 ggtcgcaccacgagacgcagagcatcagcagccgc 80568

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  149 bits (75), Expect = 1e-32
 Identities = 194/233 (83%), Gaps = 3/233 (1%)
 Strand = Plus / Minus

                                                                            
Query: 177      gcagcacggccatggatttcagccggcaggacatggcgtcggcctccgcggcagcgttct 236
                ||||||| |||||||||||||||  || ||||||||||||||| |||||||| ||||| |
Sbjct: 21734897 gcagcaccgccatggatttcagcttgctggacatggcgtcggcgtccgcggcggcgttgt 21734838

                                                                            
Query: 237      cccgggcgatgcggctccacctctgctcgccgccg---gagacccggcacgccgtcgcga 293
                 ||| ||||  |||| |||||  || ||| ||  |   |||||||||||||||||| |||
Sbjct: 21734837 tccgcgcgagccggcgccaccggtggtcgtcggtgtccgagacccggcacgccgtcacga 21734778

                                                                            
Query: 294      agtccaggaccttgccgaagatcctgaacatctccacggagtagatcctgtcctggccgg 353
                |||| || ||||||||||||| ||||||||||||||||| |||||   |||||  |||||
Sbjct: 21734777 agtcgagcaccttgccgaagaccctgaacatctccacggcgtagacggtgtccgcgccgg 21734718

                                                                     
Query: 354      cggcgaacaccgcgttggaatccattggcgcgtccgggtgcgccgacgcctcg 406
                |||||||| | ||||||   ||||| |||||||| ||||||| ||||||||||
Sbjct: 21734717 cggcgaacgcggcgttgaggtccatgggcgcgtcggggtgcgacgacgcctcg 21734665



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 484      ggtcgcaccacgagacgcagagcatgaacagccgc 518
                ||||||||||||||||||||||||| | |||||||
Sbjct: 21734582 ggtcgcaccacgagacgcagagcatcagcagccgc 21734548

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>gb|AY107797.1| Zea mays PCO101826 mRNA sequence
          Length = 491

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 141/172 (81%)
 Strand = Plus / Minus

                                                                       
Query: 177 gcagcacggccatggatttcagccggcaggacatggcgtcggcctccgcggcagcgttct 236
           ||||||| ||||| ||||| |||| ||| ||||||| |||||||||||  || ||||| |
Sbjct: 180 gcagcaccgccatagatttgagcctgcatgacatggagtcggcctccgtcgccgcgtttt 121

                                                                       
Query: 237 cccgggcgatgcggctccacctctgctcgccgccggagacccggcacgccgtcgcgaagt 296
           ||||| | |  ||||||||| |||| ||| || | || |||||||| || ||  |||| |
Sbjct: 120 cccggccaacccggctccacatctgttcggcgtccgaaacccggcaggcagtaacgaaat 61

                                                               
Query: 297 ccaggaccttgccgaagatcctgaacatctccacggagtagatcctgtcctg 348
           | || || || |||||||||||||||||||| |||| |||||||||||||||
Sbjct: 60  caagcactttaccgaagatcctgaacatctctacggcgtagatcctgtcctg 9

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>gb|AC115484.2| Drosophila melanogaster clone BACR06K01, complete sequence
          Length = 168504

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 44     acagcaagcaatgcaatgcaatggaatt 71
              ||||||||||||||| ||||||||||||
Sbjct: 141861 acagcaagcaatgcattgcaatggaatt 141834

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>gb|AC092399.2| Drosophila melanogaster, chromosome 2L, region 36B-36C, BAC clone
              BACR31N11, complete sequence
          Length = 122013

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 44     acagcaagcaatgcaatgcaatggaatt 71
              ||||||||||||||| ||||||||||||
Sbjct: 117098 acagcaagcaatgcattgcaatggaatt 117071

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>gb|AC092395.1|AC092395 Drosophila melanogaster, chromosome 2L, region 36C-36D, BAC clone
             BACR12D02, complete sequence
          Length = 164414

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 44    acagcaagcaatgcaatgcaatggaatt 71
             ||||||||||||||| ||||||||||||
Sbjct: 15216 acagcaagcaatgcattgcaatggaatt 15189

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>gb|AE003649.2| Drosophila melanogaster chromosome 2L, section 58 of 83 of the complete
             sequence
          Length = 275699

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 44    acagcaagcaatgcaatgcaatggaatt 71
             ||||||||||||||| ||||||||||||
Sbjct: 82555 acagcaagcaatgcattgcaatggaatt 82528

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>gb|AC112210.2| Homo sapiens chromosome 3 clone RP11-221D23, complete sequence
          Length = 146699

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 79    cgagctgcacatcagtcagcaa 100
             ||||||||||||||||||||||
Sbjct: 79839 cgagctgcacatcagtcagcaa 79818

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>gb|AC092217.1|AC092217 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone
              BACR11D14, complete sequence
          Length = 158347

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 53     aatgcaatgcaatggaattgctgtac 78
              ||||||||| ||||||||||||||||
Sbjct: 142780 aatgcaatgaaatggaattgctgtac 142755

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 349     gccggcggcgaacaccgcgttg 370
               ||||||||||||||||||||||
Sbjct: 3702370 gccggcggcgaacaccgcgttg 3702349

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 347    tggccggcggcgaacaccgcgt 368
              ||||||||||||||||||||||
Sbjct: 492186 tggccggcggcgaacaccgcgt 492165

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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0482C06
          Length = 182779

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 347    tggccggcggcgaacaccgcgt 368
              ||||||||||||||||||||||
Sbjct: 132387 tggccggcggcgaacaccgcgt 132366

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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 414    ggagcagcggtatcgagcccga 435
              ||||||||||||||||||||||
Sbjct: 119329 ggagcagcggtatcgagcccga 119308

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>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete
              sequence
          Length = 290034

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 53     aatgcaatgcaatggaattgctgtac 78
              ||||||||| ||||||||||||||||
Sbjct: 108827 aatgcaatgaaatggaattgctgtac 108852

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>gb|AC004371.1|AC004371 Drosophila melanogaster DNA sequence (P1 DS06482 (D76)), complete
             sequence
          Length = 87124

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 53    aatgcaatgcaatggaattgctgtac 78
             ||||||||| ||||||||||||||||
Sbjct: 19057 aatgcaatgaaatggaattgctgtac 19082

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>gb|AC149782.2| Bos taurus  BAC CH240-6M21 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 196394

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   taagtggaaaagaaaaacaga 151
             |||||||||||||||||||||
Sbjct: 71538 taagtggaaaagaaaaacaga 71558

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>ref|XM_752673.1| Ustilago maydis 521 hypothetical protein (UM01619.1) partial mRNA
          Length = 2580

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 408  tccactggagcagcggtatcg 428
            |||||||||||||||||||||
Sbjct: 1310 tccactggagcagcggtatcg 1290

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>gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence
          Length = 140345

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 132   aagtggaaaagaaaaacagagtaga 156
             |||||||||||| ||||||||||||
Sbjct: 60824 aagtggaaaagataaacagagtaga 60800

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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 258    tctgctcgccgccggagacccggca 282
              ||||||||||| |||||||||||||
Sbjct: 289521 tctgctcgccgacggagacccggca 289545

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>emb|AL121770.1|SPAC821 S.pombe chromosome I cosmid c821
          Length = 35452

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    agcaagcaatgcaatgcaatg 66
             |||||||||||||||||||||
Sbjct: 20170 agcaagcaatgcaatgcaatg 20190

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 496     agacgcagagcatgaacagcc 516
               |||||||||||||||||||||
Sbjct: 2974275 agacgcagagcatgaacagcc 2974295

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>emb|X57509.1|PUPENRPI P.univalens terminal heterochromatin pentameric repeat segment
          DNA (clone pAm10)
          Length = 470

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 51 gcaatgcaatgcaatggaatt 71
          |||||||||||||||||||||
Sbjct: 49 gcaatgcaatgcaatggaatt 29

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>ref|NM_196097.1| Oryza sativa (japonica cultivar-group) putative PPR-repeat protein
            (OJ1003C07.14), mRNA
          Length = 2742

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 340  cctgtcctggccggcggcga 359
            ||||||||||||||||||||
Sbjct: 2158 cctgtcctggccggcggcga 2139

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    tcgagcccgaggttcagctc 445
              ||||||||||||||||||||
Sbjct: 123833 tcgagcccgaggttcagctc 123852

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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 382     cgcgtccgggtgcgccgacg 401
               ||||||||||||||||||||
Sbjct: 2320028 cgcgtccgggtgcgccgacg 2320009

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>gb|AC113514.9| Mus musculus chromosome 19, clone RP23-475D11, complete sequence
          Length = 170366

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   aaagaaaaacagagtagaca 158
             ||||||||||||||||||||
Sbjct: 39284 aaagaaaaacagagtagaca 39303

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 340     cctgtcctggccggcggcga 359
               ||||||||||||||||||||
Sbjct: 3909210 cctgtcctggccggcggcga 3909229

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>gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, complete sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aatgcaatgcaatggaattg 72
             ||||||||||||||||||||
Sbjct: 85296 aatgcaatgcaatggaattg 85277



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    gcaatgcaatgcaatggaat 70
             ||||||||||||||||||||
Sbjct: 67005 gcaatgcaatgcaatggaat 66986

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>ref|XM_534544.2| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase,
            non-receptor type 18 (LOC606794), mRNA
          Length = 11301

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  gcaggacatggcgtcggcct 221
            ||||||||||||||||||||
Sbjct: 5221 gcaggacatggcgtcggcct 5202

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>ref|XM_803377.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506895.20) partial mRNA
          Length = 1596

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 449 caccttccgcaccaccttgt 468
           ||||||||||||||||||||
Sbjct: 558 caccttccgcaccaccttgt 539

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>ref|XM_813059.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508501.270) partial mRNA
          Length = 1596

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 449 caccttccgcaccaccttgt 468
           ||||||||||||||||||||
Sbjct: 558 caccttccgcaccaccttgt 539

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>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence
          Length = 145002

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tggaaaagaaaaacagagta 154
             ||||||||||||||||||||
Sbjct: 79227 tggaaaagaaaaacagagta 79246

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>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete
             sequence
          Length = 106110

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   cctgtcctggccggcggcga 359
             ||||||||||||||||||||
Sbjct: 10954 cctgtcctggccggcggcga 10935

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>gb|AC136932.4| Homo sapiens chromosome 16 clone CTD-2522B17, complete sequence
          Length = 171882

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     gcaatgcaatgcaatggaat 70
              ||||||||||||||||||||
Sbjct: 153398 gcaatgcaatgcaatggaat 153379



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     gcaatgcaatgcaatggaat 70
              ||||||||||||||||||||
Sbjct: 147571 gcaatgcaatgcaatggaat 147552

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 340     cctgtcctggccggcggcga 359
               ||||||||||||||||||||
Sbjct: 3651022 cctgtcctggccggcggcga 3651041

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>emb|AJ851756.1| Gallus gallus mRNA for hypothetical protein, clone 27f8
          Length = 4458

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  gaaaagaaaaacagagtaga 156
            ||||||||||||||||||||
Sbjct: 4396 gaaaagaaaaacagagtaga 4377

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>dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, complete sequences
          Length = 193714

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     gcaatgcaatgcaatggaat 70
              ||||||||||||||||||||
Sbjct: 172205 gcaatgcaatgcaatggaat 172186

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      gcaatgcaatgcaatggaat 70
               ||||||||||||||||||||
Sbjct: 6016954 gcaatgcaatgcaatggaat 6016935

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>emb|BX322638.6| Zebrafish DNA sequence from clone DKEYP-114C5 in linkage group 11,
             complete sequence
          Length = 85185

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   gtggaaaagaaaaacagagt 153
             ||||||||||||||||||||
Sbjct: 20297 gtggaaaagaaaaacagagt 20278

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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare clone OJ1003C07, from chromosome 10, complete
              sequence
          Length = 115188

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    cctgtcctggccggcggcga 359
              ||||||||||||||||||||
Sbjct: 101775 cctgtcctggccggcggcga 101756

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>dbj|AK158834.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K430340P04 product:unclassifiable, full insert
            sequence
          Length = 4199

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  aggagcagcacggccatgga 192
            ||||||||||||||||||||
Sbjct: 1003 aggagcagcacggccatgga 1022

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     cgccgccggagacccggcac 283
               ||||||||||||||||||||
Sbjct: 1330137 cgccgccggagacccggcac 1330118

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>gb|AC154190.2| Mus musculus BAC clone RP24-465P16 from chromosome 16, complete
             sequence
          Length = 150894

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   aggagcagcacggccatgga 192
             ||||||||||||||||||||
Sbjct: 25687 aggagcagcacggccatgga 25706

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    cctgtcctggccggcggcga 359
              ||||||||||||||||||||
Sbjct: 532863 cctgtcctggccggcggcga 532844

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 340      cctgtcctggccggcggcga 359
                ||||||||||||||||||||
Sbjct: 11057282 cctgtcctggccggcggcga 11057301

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>gb|AC172374.4| Pan troglodytes BAC clone CH251-119H6 from chromosome y, complete
             sequence
          Length = 176115

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    gcaatgcaatgcaatggaat 70
             ||||||||||||||||||||
Sbjct: 50620 gcaatgcaatgcaatggaat 50601

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>gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chromosome y, complete
              sequence
          Length = 178039

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     gcaatgcaatgcaatggaat 70
              ||||||||||||||||||||
Sbjct: 177661 gcaatgcaatgcaatggaat 177642

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>gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chromosome y, complete
             sequence
          Length = 230623

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gcaatgcaatgcaatggaat 70
             ||||||||||||||||||||
Sbjct: 91992 gcaatgcaatgcaatggaat 92011

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     ccggcggcgaacaccgcgtt 369
               ||||||||||||||||||||
Sbjct: 2613069 ccggcggcgaacaccgcgtt 2613050

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>gb|AE004834.1| Pseudomonas aeruginosa PAO1, section 395 of 529 of the complete
            genome
          Length = 11537

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  ttcagccggcaggacatggc 213
            ||||||||||||||||||||
Sbjct: 4461 ttcagccggcaggacatggc 4480

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>gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, complete sequence
          Length = 159831

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gcaatgcaatgcaatggaat 70
             ||||||||||||||||||||
Sbjct: 22490 gcaatgcaatgcaatggaat 22509

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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     acatggcgtcggcctccgcg 226
               ||||||||||||||||||||
Sbjct: 3101195 acatggcgtcggcctccgcg 3101214

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>ref|XM_308776.2| Anopheles gambiae str. PEST ENSANGP00000014983
           (ENSANGG00000012494), partial mRNA
          Length = 2943

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tcagctcgaacaccttccgc 458
           ||||||||||||||||||||
Sbjct: 778 tcagctcgaacaccttccgc 759

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>emb|AL583842.40| Human DNA sequence from clone RP11-417J8 on chromosome 1,
          complete sequence
          Length = 195588

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 51 gcaatgcaatgcaatggaat 70
          ||||||||||||||||||||
Sbjct: 60 gcaatgcaatgcaatggaat 79

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>gb|AY772007.1| Nocardioides sp. JS614 putative PAPS reductase gene, partial cds;
             putative argininosuccinate lyase, putative
             1-aminocyclopropane-1-carboxylate deaminase, putative
             adenylosuccinate lyase, putative phosphosulfolactate
             synthase, putative oxidoreductase/dehydrogenase, putative
             short-chain dehydrogenase, putative acyl-CoA transferase,
             putative acyl-CoA synthetase, epoxyalkane: coenzyme M
             transferase (etnE), probable alkene monooxygenase beta
             subunit (etnA), probable alkene monooxygenase effector
             (etnB), probable alkene monooxygenase alpha subunit
             (etnC), probable alkene monooxygenase reductase,
             hypothetical proteins, putative dimethylsulfoxide
             reductase, hypothetical protein, putative TraA conjugation
             protein, hypothetical protein, putative ParB partitioning
             protein, and hypothetical proteins genes, complete cds;
             putative DNA integrase/recombinase gene, partial cds; and
             unknown gene
          Length = 34814

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   gcacgccgtcgcgaagtcca 299
             ||||||||||||||||||||
Sbjct: 11599 gcacgccgtcgcgaagtcca 11580

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>emb|CT030235.12| Mouse DNA sequence from clone RP23-240F19 on chromosome 16, complete
             sequence
          Length = 236028

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   aggagcagcacggccatgga 192
             ||||||||||||||||||||
Sbjct: 20741 aggagcagcacggccatgga 20722

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 340      cctgtcctggccggcggcga 359
                ||||||||||||||||||||
Sbjct: 11063722 cctgtcctggccggcggcga 11063741

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>gb|CP000221.1| Drosophila melanogaster genomic scaffold 211000022280740
          Length = 552562

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     gcaagcaatgcaatgcaatg 66
              ||||||||||||||||||||
Sbjct: 211740 gcaagcaatgcaatgcaatg 211759

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>emb|AJ401317.1|SHY401317 Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR40
          Length = 424

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gcaatgcaatgcaatggaat 70
           ||||||||||||||||||||
Sbjct: 379 gcaatgcaatgcaatggaat 360

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>emb|X57503.1|PUPENRPC P.univalens pentameric repeat segment DNA (clone pAm3)
          Length = 537

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gcaatgcaatgcaatggaat 70
           ||||||||||||||||||||
Sbjct: 441 gcaatgcaatgcaatggaat 422



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  caatgcaatgcaatggaatt 71
           ||||||||||||||||||||
Sbjct: 155 caatgcaatgcaatggaatt 136


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,243,658
Number of Sequences: 3902068
Number of extensions: 4243658
Number of successful extensions: 88887
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87159
Number of HSP's gapped (non-prelim): 1720
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result