ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C19, full insert sequence Length = 2181 Score = 377 bits (190), Expect = e-101 Identities = 274/298 (91%), Gaps = 3/298 (1%) Strand = Plus / Minus Query: 454 aatcccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatg 513 |||||||||| || || ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1800 aatcccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagg 1741 Query: 514 gatgccactcacatccaatgcaaactcccgttgtggcacttcaatgtcttgaatctcctg 573 |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| Sbjct: 1740 gatgccactcacatccaatgcaaactcca-ttgtggcacttcaacgtcttaaatctcctg 1682 Query: 574 cagcttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctc 633 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 1681 cagcttttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctc 1622 Query: 634 ccatcaggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctc 693 ||||| || |||||| |||| |||||||| ||||||||||||||||| || ||||||| | Sbjct: 1621 ccatctggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgc 1562 Query: 694 ttcttctttattaagttgaaacctttcccttggtgctgtatatcagtatctgattgtc 751 |||||| || |||||||||||||| | ||||||| |||||||||| |||||||||||| Sbjct: 1561 ttcttc-ttgttaagttgaaacctct-ccttggtactgtatatcaatatctgattgtc 1506
>ref|XM_470874.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2029 Score = 369 bits (186), Expect = 9e-99 Identities = 270/294 (91%), Gaps = 3/294 (1%) Strand = Plus / Minus Query: 458 ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 517 |||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1756 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 1697 Query: 518 ccactcacatccaatgcaaactcccgttgtggcacttcaatgtcttgaatctcctgcagc 577 |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 1696 ccactcacatccaatgcaaactcca-ttgtggcacttcaacgtcttaaatctcctgcagc 1638 Query: 578 ttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccat 637 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 1637 ttttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccat 1578 Query: 638 caggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttct 697 | || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||| Sbjct: 1577 ctggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttct 1518 Query: 698 tctttattaagttgaaacctttcccttggtgctgtatatcagtatctgattgtc 751 || || |||||||||||||| | ||||||| |||||||||| |||||||||||| Sbjct: 1517 tc-ttgttaagttgaaacctct-ccttggtactgtatatcaatatctgattgtc 1466
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 369 bits (186), Expect = 9e-99 Identities = 270/294 (91%), Gaps = 3/294 (1%) Strand = Plus / Plus Query: 458 ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 517 |||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 144534 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 144593 Query: 518 ccactcacatccaatgcaaactcccgttgtggcacttcaatgtcttgaatctcctgcagc 577 |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 144594 ccactcacatccaatgcaaactcca-ttgtggcacttcaacgtcttaaatctcctgcagc 144652 Query: 578 ttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccat 637 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 144653 ttttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccat 144712 Query: 638 caggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttct 697 | || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||| Sbjct: 144713 ctggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttct 144772 Query: 698 tctttattaagttgaaacctttcccttggtgctgtatatcagtatctgattgtc 751 || || |||||||||||||| | ||||||| |||||||||| |||||||||||| Sbjct: 144773 tc-ttgttaagttgaaacctct-ccttggtactgtatatcaatatctgattgtc 144824
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 369 bits (186), Expect = 9e-99 Identities = 270/294 (91%), Gaps = 3/294 (1%) Strand = Plus / Minus Query: 458 ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 517 |||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 15905883 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 15905824 Query: 518 ccactcacatccaatgcaaactcccgttgtggcacttcaatgtcttgaatctcctgcagc 577 |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 15905823 ccactcacatccaatgcaaactcca-ttgtggcacttcaacgtcttaaatctcctgcagc 15905765 Query: 578 ttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccat 637 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 15905764 ttttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccat 15905705 Query: 638 caggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttct 697 | || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||| Sbjct: 15905704 ctggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttct 15905645 Query: 698 tctttattaagttgaaacctttcccttggtgctgtatatcagtatctgattgtc 751 || || |||||||||||||| | ||||||| |||||||||| |||||||||||| Sbjct: 15905644 tc-ttgttaagttgaaacctct-ccttggtactgtatatcaatatctgattgtc 15905593
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 369 bits (186), Expect = 9e-99 Identities = 270/294 (91%), Gaps = 3/294 (1%) Strand = Plus / Minus Query: 458 ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 517 |||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 15900417 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 15900358 Query: 518 ccactcacatccaatgcaaactcccgttgtggcacttcaatgtcttgaatctcctgcagc 577 |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 15900357 ccactcacatccaatgcaaactcca-ttgtggcacttcaacgtcttaaatctcctgcagc 15900299 Query: 578 ttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccat 637 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 15900298 ttttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccat 15900239 Query: 638 caggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttct 697 | || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||| Sbjct: 15900238 ctggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttct 15900179 Query: 698 tctttattaagttgaaacctttcccttggtgctgtatatcagtatctgattgtc 751 || || |||||||||||||| | ||||||| |||||||||| |||||||||||| Sbjct: 15900178 tc-ttgttaagttgaaacctct-ccttggtactgtatatcaatatctgattgtc 15900127
>ref|NM_100933.2| Arabidopsis thaliana nucleotide binding AT1G10580 mRNA, complete cds Length = 2073 Score = 113 bits (57), Expect = 9e-22 Identities = 127/149 (85%), Gaps = 1/149 (0%) Strand = Plus / Minus Query: 572 tgcagcttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacc 631 ||||||| ||||||||||| |||||||| |||| |||||||| |||||||| ||||||| Sbjct: 1675 tgcagctcttccagtcccaaaaccagcacttaccctcaccatctcctgacattacaaacc 1616 Query: 632 tcccatcaggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacc 691 ||||| || |||||| | || || || |||||||| || |||||||| |||||||||| Sbjct: 1615 gtccatctggcgagaagttaacttggcatgcataaccggcaacaatgtgccctgcaaacc 1556 Query: 692 tcttcttctttattaagttgaaacctttc 720 ||||||| |||||| || ||||||||||| Sbjct: 1555 tcttctt-tttattcagctgaaacctttc 1528
>gb|AC007067.4|AC007067 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence Length = 89934 Score = 113 bits (57), Expect = 9e-22 Identities = 127/149 (85%), Gaps = 1/149 (0%) Strand = Plus / Plus Query: 572 tgcagcttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacc 631 ||||||| ||||||||||| |||||||| |||| |||||||| |||||||| ||||||| Sbjct: 73149 tgcagctcttccagtcccaaaaccagcacttaccctcaccatctcctgacattacaaacc 73208 Query: 632 tcccatcaggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacc 691 ||||| || |||||| | || || || |||||||| || |||||||| |||||||||| Sbjct: 73209 gtccatctggcgagaagttaacttggcatgcataaccggcaacaatgtgccctgcaaacc 73268 Query: 692 tcttcttctttattaagttgaaacctttc 720 ||||||| |||||| || ||||||||||| Sbjct: 73269 tcttctt-tttattcagctgaaacctttc 73296
>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence Length = 167776 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 358 ctacagtcccaactgaaagttg 379 |||||||||||||||||||||| Sbjct: 78265 ctacagtcccaactgaaagttg 78244
>emb|AL672038.7| Mouse DNA sequence from clone RP23-317H19 on chromosome X, complete sequence Length = 181127 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 gaagaaaaactgaaaatgaagc 189 |||||||||||||||||||||| Sbjct: 18082 gaagaaaaactgaaaatgaagc 18103
>ref|XM_532261.2| PREDICTED: Canis familiaris similar to Pre-mRNA splicing factor PRP17 (hPRP17) (Cell division cycle 40 homolog) (EH-binding protein 3) (Ehb3), transcript variant 1 (LOC475025), mRNA Length = 1848 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 cacctgacaagcataacctgc 671 ||||||||||||||||||||| Sbjct: 1557 cacctgacaagcataacctgc 1537
>ref|XM_741178.1| Plasmodium chabaudi chabaudi T-complex protein beta subunit (PC000573.03.0) partial mRNA Length = 1599 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 aaaacgaagaaaaactgaaaatgaa 187 |||||||||||||| |||||||||| Sbjct: 806 aaaacgaagaaaaaatgaaaatgaa 830
>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8, complete sequence Length = 211489 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 ggtatggtatggtacacggtacatt 260 |||||||| |||||||||||||||| Sbjct: 57363 ggtatggtttggtacacggtacatt 57387
>gb|AC113152.4| Homo sapiens BAC clone RP11-245L10 from 4, complete sequence Length = 109659 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 605 cttcaccatcccctgacatca 625 ||||||||||||||||||||| Sbjct: 81924 cttcaccatcccctgacatca 81904
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ttttgagatagaggaagtatt 23 ||||||||||||||||||||| Sbjct: 26457515 ttttgagatagaggaagtatt 26457495
>ref|XM_342154.2| PREDICTED: Rattus norvegicus cell division cycle 40 homolog (yeast) (predicted) (Cdc40_predicted), mRNA Length = 2683 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 651 cacctgacaagcataacctgccacaatgtggcc 683 ||||||||||||||| ||||| || |||||||| Sbjct: 1158 cacctgacaagcatagcctgctaccatgtggcc 1126
>emb|AL355073.5|CNS05TC7 Human chromosome 14 DNA sequence BAC R-930O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175988 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 agaaaaactgaaaatgaagcc 190 ||||||||||||||||||||| Sbjct: 4072 agaaaaactgaaaatgaagcc 4052
>emb|Z95559.1|CEY41E3 Caenorhabditis elegans YAC Y41E3, complete sequence Length = 150641 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 aaaacgaagaaaaactgaaaa 183 ||||||||||||||||||||| Sbjct: 76690 aaaacgaagaaaaactgaaaa 76710
>emb|Z81512.1|CEF25C8 Caenorhabditis elegans Cosmid F25C8, complete sequence Length = 40029 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 atgttttcactcgtgacatcg 331 ||||||||||||||||||||| Sbjct: 34944 atgttttcactcgtgacatcg 34964
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ttttgagatagaggaagtatt 23 ||||||||||||||||||||| Sbjct: 26385684 ttttgagatagaggaagtatt 26385664
>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146366 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttttgagatagaggaagtatt 23 ||||||||||||||||||||| Sbjct: 84561 ttttgagatagaggaagtatt 84581 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,826,161 Number of Sequences: 3902068 Number of extensions: 7826161 Number of successful extensions: 166797 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166575 Number of HSP's gapped (non-prelim): 207 length of query: 751 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 728 effective length of database: 17,143,297,704 effective search space: 12480320728512 effective search space used: 12480320728512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
