ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20a23 |
|---|---|
| Clone Library Name | barley_pub |
>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 480 Score = 261 bits (667), Expect = 1e-69 Identities = 120/138 (86%), Positives = 133/138 (96%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSV 451 ETPAIDVC+GLLGDKA +SIYDPQVTEDQIQRDL+MNKFDWDHP+HLQPTSP++VK+VSV Sbjct: 343 ETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSV 402 Query: 450 VWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFIV 271 VWDAYEATK AH +CILTEW+EFK LDYQKIF+NMQKPAFVFDGRN+V+ADKLREIGFIV Sbjct: 403 VWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIV 462 Query: 270 YSIGKPLDAWLKDMPAIA 217 YSIGKPLD WLKDMPA+A Sbjct: 463 YSIGKPLDPWLKDMPAVA 480
>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless) Length = 476 Score = 103 bits (258), Expect = 3e-22 Identities = 55/126 (43%), Positives = 82/126 (65%), Gaps = 1/126 (0%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQ-VS 454 ET AI VC+ LL + A + IYDP+V +QI DL HP + SP VK+ V Sbjct: 343 ETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQ 393 Query: 453 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 274 + D Y A + HA+ I TEW+EF +LD+++I+ +M KPA++FDGR +++ ++L++IGF Sbjct: 394 IHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFH 453 Query: 273 VYSIGK 256 V +IGK Sbjct: 454 VQTIGK 459
>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) Length = 481 Score = 101 bits (251), Expect = 2e-21 Identities = 55/129 (42%), Positives = 81/129 (62%), Gaps = 1/129 (0%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQ-VS 454 E+ AI V K L+ + A++S+YDP+V + Q+ DLA TS V++ ++ Sbjct: 354 ESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLA------------SVTSAQDVERLIT 401 Query: 453 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 274 V D Y A +GAHA+ +LTEW+EF EL+Y +I N+MQ PA +FDGR +++ LREIGF Sbjct: 402 VESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFR 461 Query: 273 VYSIGKPLD 247 ++IG D Sbjct: 462 TFAIGTSPD 470
>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 94.7 bits (234), Expect = 2e-19 Identities = 55/131 (41%), Positives = 81/131 (61%), Gaps = 2/131 (1%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSV 451 E+ +I + K L+ + A + IYDP+V +QI DL+ HP + S + V++ Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTI 397 Query: 450 VWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIGF 277 D YEA GAHAV I TEW+ FKELDY++I M KPAF+FDGR V++ ++L+ IGF Sbjct: 398 SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGF 457 Query: 276 IVYSIGKPLDA 244 + +IGK + + Sbjct: 458 QIETIGKKVSS 468
>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 93.6 bits (231), Expect = 4e-19 Identities = 53/131 (40%), Positives = 79/131 (60%), Gaps = 2/131 (1%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSV 451 E+ +I + K L+ + A + IYDP+V +QI DL+ D + + V++ Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTI 397 Query: 450 VWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIGF 277 D YEA GAHAV I TEW+ FKELDY++I M KPAF+FDGR V++ ++L+ IGF Sbjct: 398 SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGF 457 Query: 276 IVYSIGKPLDA 244 + +IGK + + Sbjct: 458 QIETIGKKVSS 468
>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 92.4 bits (228), Expect = 1e-18 Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSV 451 E+ +I + K L+ + A + IYDP+V +QI DL+ HP S + V++ Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSADDQVSRL--VTI 397 Query: 450 VWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIGF 277 D YEA GAHA+ I TEW+ FKELDY++I M KPAF+FDGR V++ ++L+ IGF Sbjct: 398 SKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGF 457 Query: 276 IVYSIGKPLDA 244 + +IGK + + Sbjct: 458 QIETIGKKVSS 468
>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 92.0 bits (227), Expect = 1e-18 Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 2/131 (1%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSV 451 E+ +I + K L+ + A + IYDP+V +QI DL+ HP S + V++ Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSADDQVSRL--VTI 397 Query: 450 VWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIGF 277 D YEA GAHA+ I TEW+ FKELDY++I M KPAF+FDGR V++ +L+ IGF Sbjct: 398 SKDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGF 457 Query: 276 IVYSIGKPLDA 244 + +IGK + + Sbjct: 458 QIETIGKKVSS 468
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 60.8 bits (146), Expect = 3e-09 Identities = 39/126 (30%), Positives = 63/126 (50%) Frame = -2 Query: 630 ETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSV 451 ++PAI V + L A+V+ YDP+ E+ + ++ + Sbjct: 334 DSPAIAVVQALQDAGARVTGYDPEGMEN----------------------ARKLIEGLDC 371 Query: 450 VWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFIV 271 D YEA A A+ I+TEWNEF+ LD+ ++ + M+ P V D RN+ D++ + GF Sbjct: 372 ARDPYEAAAEADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRY 430 Query: 270 YSIGKP 253 SIG+P Sbjct: 431 ASIGRP 436
>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 453 Score = 59.3 bits (142), Expect = 9e-09 Identities = 27/62 (43%), Positives = 42/62 (67%) Frame = -2 Query: 438 YEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFIVYSIG 259 Y A +GA A+ ++TEW +F++ D+QKI +M+ P V DGRN+ ++ E+GFI IG Sbjct: 383 YAAVEGADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIG 441 Query: 258 KP 253 +P Sbjct: 442 RP 443
>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 434 Score = 58.9 bits (141), Expect = 1e-08 Identities = 37/126 (29%), Positives = 64/126 (50%) Frame = -2 Query: 627 TPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSVV 448 +PAI++ LL V +DP E+ K + +H K + Sbjct: 330 SPAIEIITILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLLYF 369 Query: 447 WDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFIVY 268 A EA K + I TEW+EFKEL++Q+I+N ++ P + D RN+++ + +++IGF Y Sbjct: 370 ASAVEACKSVDIIVIATEWSEFKELNWQEIYNLVKSP-MIIDLRNILDNEVMKKIGFRYY 428 Query: 267 SIGKPL 250 ++G + Sbjct: 429 AVGSQI 434
>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 432 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/126 (28%), Positives = 65/126 (51%) Frame = -2 Query: 627 TPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSVV 448 +PAI + K LL V +DP E+ K + +H K + + Sbjct: 328 SPAIAIVKILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLLYL 367 Query: 447 WDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFIVY 268 A +A K + I TEW+EFKEL++Q+I++ ++ P + D RN+++ + +++IGF Y Sbjct: 368 DSAVDACKSVDIIVIATEWSEFKELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFRYY 426 Query: 267 SIGKPL 250 ++G + Sbjct: 427 AVGSKI 432
>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid biosynthesis protein tuaD) Length = 461 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/83 (32%), Positives = 48/83 (57%) Frame = -2 Query: 501 PMHLQPTSPSSVKQVSVVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFD 322 P+ + S +QV D Y A + A ILT+W E KE++ K+ +++P + D Sbjct: 351 PIAIPEASAILGEQVEYYTDVYAAMEDTDACLILTDWPEVKEMELVKVKTLLKQPV-IID 409 Query: 321 GRNVVNADKLREIGFIVYSIGKP 253 GRN+ + ++++ G+I +SIG+P Sbjct: 410 GRNLFSLEEMQAAGYIYHSIGRP 432
>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja| UDPGD intein] Length = 895 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/66 (36%), Positives = 42/66 (63%) Frame = -2 Query: 453 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 274 V+ D YE K + I E+ +F + D++KI N+ K VFDGRN+++ +K++++GF Sbjct: 832 VLDDLYETVKNVDGIIITVEY-DFNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFK 889 Query: 273 VYSIGK 256 Y +G+ Sbjct: 890 YYGVGR 895
>HLDD_FUSNN (Q8RIA5) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)| (ADP-L-glycero-beta-D-manno-heptose-6-epimerase) (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep 6-epimerase) (AGME) Length = 332 Score = 34.7 bits (78), Expect = 0.24 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Frame = -2 Query: 570 YDPQVTEDQIQRDLAMNKF--------DWDHPMHLQPTSPSSVKQVSVVWDAYEATKGAH 415 Y+ V+ +++Q+ + +NK+ DW QP + +K +V + E KG Sbjct: 127 YNDDVSPEELQKLMPLNKYGYSKKFFDDWAFKQKNQPKQWNGLKFFNV-YGPQEYHKGRM 185 Query: 414 AVCILTEWNEFKELDYQKIFNNMQK 340 A + +N++KE Y K+F + ++ Sbjct: 186 ASMVFHTYNQYKENGYVKLFKSYKE 210
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.6 bits (65), Expect = 7.7 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = -1 Query: 565 SPGHRGPD----PAGPRHEQVRLGPPNAPAA 485 SPG GPD P GP + R GPP P A Sbjct: 539 SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA 569
>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:| Proline-rich peptide SP-A (PRP-SP-A); Proline-rich peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)] Length = 676 Score = 29.6 bits (65), Expect = 7.7 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = -1 Query: 562 PGHRGPDPAGPRHEQVRLGPPNAPAADEP 476 P GP P GP R PP P ADEP Sbjct: 398 PPPPGPPPPGPAPPGARPPPPPPPPADEP 426
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 7.7 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = -1 Query: 565 SPGHRGPD----PAGPRHEQVRLGPPNAPAA 485 SPG GPD P GP + R GPP P A Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA 573
>YKD8_YEAST (P32862) Putative 128.2 kDa transcriptional regulatory protein in| PTM1-IXR1 intergenic region Length = 1170 Score = 29.6 bits (65), Expect = 7.7 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 51 KTAQGLRNMYDLQTAVQERRTRSKDTNTTQFYA*LKMPRLRK-SL*NFLQLLWR 209 K+ QGLR ++T + ERRT T A + PRL +L NF+ + W+ Sbjct: 1109 KSGQGLRESSVMKTLLDERRTSGTQPTTAPVAA--EEPRLENVALENFVSIGWK 1160
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3| (EC 2.7.11.1) Length = 1309 Score = 29.6 bits (65), Expect = 7.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 550 GPDPAGPRHEQVRLGPPNAPAADEPII 470 GP PAGP+ LG P+ P A P++ Sbjct: 799 GPGPAGPKRPVFILGEPDPPPAATPVM 825 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,755,865 Number of Sequences: 219361 Number of extensions: 1595434 Number of successful extensions: 5285 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4934 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5271 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
