ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC099507.3| Homo sapiens chromosome 5 clone RP11-24H18, compl... 42 2.2
2gb|AC007649.12| Homo sapiens 12 BAC RPCI11-90N16 (Roswell Park C... 42 2.2
3ref|NM_144537.1| Mus musculus carboxypeptidase A5 (Cpa5), mRNA 40 8.6
4ref|XM_425847.1| PREDICTED: Gallus gallus LOC428287 (LOC428287),... 40 8.6
5gb|AC147707.5| Canis Familiaris, clone XX-10C7, complete sequence 40 8.6
6gb|AY302541.1| Human echovirus 15 strain CH 96-51 complete genome 40 8.6
7gb|AC102922.9| Mus musculus chromosome 1, clone RP24-262J8, comp... 40 8.6
8gb|AC093516.5| Homo sapiens chromosome 16 clone CTD-2537L13, com... 40 8.6
9emb|AL096705.13|HSJ1085J7 Human DNA sequence from clone RP5-1085... 40 8.6
10gb|AC010108.6| Drosophila melanogaster 3L BAC RP98-23K9 (Roswell... 40 8.6
11gb|AC010565.6| Drosophila melanogaster 3L BAC RP98-19A3 (Roswell... 40 8.6
12gb|AF466283.1| Mus musculus metallocarboxypeptidase A5 mRNA, com... 40 8.6
13gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence 40 8.6
14gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chrom... 40 8.6
15gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete s... 40 8.6
16dbj|AK015256.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.6
17gb|AC155656.10| Mus musculus 6 BAC RP24-67I3 (Roswell Park Cance... 40 8.6
18gb|AC131302.5| Mus musculus chromosome 1, clone RP24-117I22, com... 40 8.6
19gb|AC073879.7| Homo sapiens BAC clone RP11-752K22 from 2, comple... 40 8.6
20gb|AC093509.3| Homo sapiens chromosome 16 clone CTD-2337L2, comp... 40 8.6
21gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, compl... 40 8.6
22gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, co... 40 8.6
23gb|AC164660.3| Pan troglodytes BAC clone CH251-50D16 from chromo... 40 8.6
24gb|AE003545.3| Drosophila melanogaster chromosome 3L, section 40... 40 8.6
25dbj|AP006363.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 8.6

>gb|AC099507.3| Homo sapiens chromosome 5 clone RP11-24H18, complete sequence
          Length = 187386

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 470   atatcataaaagaagtcttctgctt 494
             |||||||||||||| ||||||||||
Sbjct: 56969 atatcataaaagaaatcttctgctt 56993



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>gb|AC007649.12| Homo sapiens 12 BAC RPCI11-90N16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 168623

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 152    taacaagttcagacatttcgacaat 176
              |||||||||||| ||||||||||||
Sbjct: 101342 taacaagttcagccatttcgacaat 101318



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>ref|NM_144537.1| Mus musculus carboxypeptidase A5 (Cpa5), mRNA
          Length = 1964

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 aagcacccagcattctcttgttca 345
           ||||||||||||||||| ||||||
Sbjct: 153 aagcacccagcattctcatgttca 130



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>ref|XM_425847.1| PREDICTED: Gallus gallus LOC428287 (LOC428287), mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 321 taagcacccagcattctcttgttc 344
           ||||||||||||| ||||||||||
Sbjct: 698 taagcacccagcagtctcttgttc 675



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>gb|AC147707.5| Canis Familiaris, clone XX-10C7, complete sequence
          Length = 199690

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    cagcattctcttgttcactg 348
              ||||||||||||||||||||
Sbjct: 111454 cagcattctcttgttcactg 111435



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>gb|AY302541.1| Human echovirus 15 strain CH 96-51 complete genome
          Length = 7437

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 565  agagctttcaatgacttctc 584
            ||||||||||||||||||||
Sbjct: 3919 agagctttcaatgacttctc 3900



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>gb|AC102922.9| Mus musculus chromosome 1, clone RP24-262J8, complete sequence
          Length = 178026

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    aggatgggctgatggtaaga 522
              ||||||||||||||||||||
Sbjct: 162686 aggatgggctgatggtaaga 162705



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>gb|AC093516.5| Homo sapiens chromosome 16 clone CTD-2537L13, complete sequence
          Length = 186814

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 540    gacatcctcacctatctcttcctc 563
              |||||| |||||||||||||||||
Sbjct: 161337 gacatcatcacctatctcttcctc 161360



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>emb|AL096705.13|HSJ1085J7 Human DNA sequence from clone RP5-1085J7 on chromosome 10, complete
             sequence
          Length = 34836

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    actgacagatttgacagatt 104
             ||||||||||||||||||||
Sbjct: 19375 actgacagatttgacagatt 19356



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>gb|AC010108.6| Drosophila melanogaster 3L BAC RP98-23K9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167187

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    tatcataaaagaagtcttct 490
              ||||||||||||||||||||
Sbjct: 143869 tatcataaaagaagtcttct 143888



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>gb|AC010565.6| Drosophila melanogaster 3L BAC RP98-19A3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 159928

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   tatcataaaagaagtcttct 490
             ||||||||||||||||||||
Sbjct: 31610 tatcataaaagaagtcttct 31629



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>gb|AF466283.1| Mus musculus metallocarboxypeptidase A5 mRNA, complete cds
          Length = 1964

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 aagcacccagcattctcttgttca 345
           ||||||||||||||||| ||||||
Sbjct: 153 aagcacccagcattctcatgttca 130



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>gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence
          Length = 169540

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   atttcagcatcgctatgaac 121
             ||||||||||||||||||||
Sbjct: 30043 atttcagcatcgctatgaac 30024



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>gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chromosome unknown,
            complete sequence
          Length = 197895

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 540  gacatcctcacctatctcttcctc 563
            |||||| |||||||||||||||||
Sbjct: 7309 gacatcatcacctatctcttcctc 7286



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>gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete sequence
          Length = 186752

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    catatcttgtatatattaca 276
              ||||||||||||||||||||
Sbjct: 149907 catatcttgtatatattaca 149888



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>dbj|AK015256.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930430M09 product:similar to
           CARBOXYPEPTIDASE A5 [Homo sapiens], full insert sequence
          Length = 1966

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 aagcacccagcattctcttgttca 345
           ||||||||||||||||| ||||||
Sbjct: 153 aagcacccagcattctcatgttca 130



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>gb|AC155656.10| Mus musculus 6 BAC RP24-67I3 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162118

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 322   aagcacccagcattctcttgttca 345
             ||||||||||||||||| ||||||
Sbjct: 75925 aagcacccagcattctcatgttca 75902



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>gb|AC131302.5| Mus musculus chromosome 1, clone RP24-117I22, complete sequence
          Length = 155098

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    aggatgggctgatggtaaga 522
              ||||||||||||||||||||
Sbjct: 128050 aggatgggctgatggtaaga 128031



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>gb|AC073879.7| Homo sapiens BAC clone RP11-752K22 from 2, complete sequence
          Length = 188181

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ctgacagatttgacagattt 105
             ||||||||||||||||||||
Sbjct: 45957 ctgacagatttgacagattt 45938



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>gb|AC093509.3| Homo sapiens chromosome 16 clone CTD-2337L2, complete sequence
          Length = 120592

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 540   gacatcctcacctatctcttcctc 563
             |||||| |||||||||||||||||
Sbjct: 82368 gacatcatcacctatctcttcctc 82345



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>gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, complete sequence
          Length = 169622

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   catatcttgtatatattaca 276
             ||||||||||||||||||||
Sbjct: 72518 catatcttgtatatattaca 72499



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>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence
          Length = 224670

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    atttcagcatcgctatgaac 121
              ||||||||||||||||||||
Sbjct: 199771 atttcagcatcgctatgaac 199752



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>gb|AC164660.3| Pan troglodytes BAC clone CH251-50D16 from chromosome unknown,
            complete sequence
          Length = 246546

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 540  gacatcctcacctatctcttcctc 563
            |||||| |||||||||||||||||
Sbjct: 1332 gacatcatcacctatctcttcctc 1355



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>gb|AE003545.3| Drosophila melanogaster chromosome 3L, section 40 of 83 of the complete
              sequence
          Length = 282115

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    tatcataaaagaagtcttct 490
              ||||||||||||||||||||
Sbjct: 202468 tatcataaaagaagtcttct 202487



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>dbj|AP006363.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34B12, TM0147b,
             complete sequence
          Length = 56052

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   caatcaggatgggctgatgg 517
             ||||||||||||||||||||
Sbjct: 16807 caatcaggatgggctgatgg 16826


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,615,124
Number of Sequences: 3902068
Number of extensions: 5615124
Number of successful extensions: 103458
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103406
Number of HSP's gapped (non-prelim): 52
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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