| Clone Name | rbags20a13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full insert sequence Length = 1094 Score = 333 bits (168), Expect = 5e-88 Identities = 448/538 (83%), Gaps = 5/538 (0%) Strand = Plus / Minus Query: 230 tcttccacctccgtaaagtttttgggataagtgtatgttggatataaggtcttcagaatg 289 |||||||| ||| |||||||||||||||||| || ||||||||||||||||| | |||| Sbjct: 879 tcttccacatccacaaagtttttgggataagtataagttggatataaggtctttaaaatg 820 Query: 290 tttatgacatcagaaacttttattcgtactggactgcagatgtaccgtccagatgcctct 349 ||||| | |||||| ||| ||||| | ||| ||||||||||| ||||| ||||| | Sbjct: 819 tttatcatatcagagactcttattggagctgagctgcagatgtatcgtccggatgc---t 763 Query: 350 ggattttcatatgccagaagaagagcatcggcaacatcacggacatccactagattccag 409 ||||||||||| |||| ||| ||||||| |||||||||||| |||||||||| ||||| | Sbjct: 762 ggattttcatacgccaaaaggagagcattggcaacatcacgaacatccactacattccgg 703 Query: 410 aatctattttctacagtctcatgttctcctttgagatatttgaggagaattttactgctc 469 | ||||||||| ||||| ||| | |||||||||| ||| || | ||||| |||||| ||| Sbjct: 702 agtctattttcgacagtgtcacgatctcctttgaaatagttaatgagaactttactactc 643 Query: 470 gcattcactgttggctgcatcaaggggccaagtaccaatgatggtagaatagctacaaca 529 || || ||||| | ||||| ||||| |||| ||||||||||| ||||| ||||| Sbjct: 642 gcgtttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatg 583 Query: 530 tccatcccagttttcgctgcataagcaaaagcctcacgctctgcgcgcgttttggaaagc 589 |||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||| Sbjct: 582 tccagcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaagg 523 Query: 590 aaataccaatcctcaccctttctgcacagatcctcgtctgaccagctgtcttcagtaaat 649 |||||||||||| | ||||||||| | ||||| |||||||| ||||||||||| || Sbjct: 522 taataccaatcctgattctttctgcataattcctcatctgaccaactgtcttcagtgaaa 463 Query: 650 actttgcccttgggccagttaggattgttgaacacagcagcacatgaagacactatgaca 709 | || |||| |||||||||||||| ||||||| |||||| |||||||| |||||| Sbjct: 462 gccttatcctttggccagttaggattactgaacacggcagcaatggaagacaccatgaca 403 Query: 710 actcgcttaacttttggcctcgttgcaagccttcaacacatttcagtgtgcctgttac 767 ||||||||||||||| ||||| | ||| |||||||||||| || |||||||||||||| Sbjct: 402 actcgcttaactttt-gcctcatggcaggccttcaacaca-ttaagtgtgcctgttac 347 Score = 77.8 bits (39), Expect = 5e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 122 aggatgccagatgctttgtaggattcgacactgtctccgagggtcttctctacaggcctg 181 ||||||||| |||||||||||||||| || ||||| | |||||| | ||| | ||||||| Sbjct: 987 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 928 Query: 182 aaggtccaccctagcttctgaagtttctcagaact 216 || |||| || |||||||||||||||||| |||| Sbjct: 927 aaactccagccaagcttctgaagtttctcaaaact 893
>gb|BT018028.1| Zea mays clone EL01N0529H05.c mRNA sequence Length = 1336 Score = 174 bits (88), Expect = 3e-40 Identities = 289/356 (81%) Strand = Plus / Minus Query: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307 ||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| | | Sbjct: 877 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcactt 818 Query: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367 |||||| || |||||||||||| |||||||| || ||||| ||||| || |||||| Sbjct: 817 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 758 Query: 368 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 427 |||||||| || ||||||||||| |||||||| | ||| | || | | ||||| |||||| Sbjct: 757 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 698 Query: 428 tcatgttctcctttgagatatttgaggagaattttactgctcgcattcactgttggctgc 487 || | |||||| ||| |||||| |||| ||||| ||||||| ||| ||||| |||||| Sbjct: 697 tcgcgatctcctgtgaaatatttaaggatgattttgctgctcgaatttactgtaggctgc 638 Query: 488 atcaaggggccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgct 547 |||||||| |||| ||| || || || ||||| ||||||||||| ||| ||||| ||| Sbjct: 637 atcaagggtccaaatactaacgacgggcaaatagttacaacatccagccctgtttttgct 578 Query: 548 gcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctc 603 |||||| |||||||||| || || || | || ||||||| |||||||||||||| Sbjct: 577 gcataaacaaaagcctctcgttccgccagtgtcttggaaacaaaataccaatcctc 522 Score = 75.8 bits (38), Expect = 2e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 108 tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 167 |||||| ||| |||||||||||| |||||||||| |||| ||| |||| | ||||| | Sbjct: 1017 tggatgttcaattcaggatgccaaatgctttgtacaattcaacagtgtcgcggagggatt 958 Query: 168 tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 213 ||||| |||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 957 cctctataggcttgaagctccaccccagcttctgcagtttctcaga 912 Score = 42.1 bits (21), Expect = 2.7 Identities = 58/69 (84%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 683 acagcagcacatgaagacactatgacaactcgcttaacttttggcctcgttgcaagcctt 742 ||||| ||||||||||| || | ||||||||| ||||||| ||||| | ||||||||| Sbjct: 442 acagctgcacatgaagagaccaccacaactcgcccaactttt-gcctcatagcaagcctt 384 Query: 743 caacacatt 751 |||||||| Sbjct: 383 taacacatt 375
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 139 bits (70), Expect = 2e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307 |||||||||||||| || ||||||||||||||||| | ||||||||| | |||||| ||| Sbjct: 24690622 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 24690681 Query: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367 ||||| | ||| ||||||||||| ||||| ||||| |||||||||||| |||| | Sbjct: 24690682 cttattggagctgagctgcagatgtatcgtccggatgc---tggattttcatacgccaaa 24690738 Query: 368 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 427 || ||||||| |||||||||||| |||||||||| ||||| || ||||||||| ||||| Sbjct: 24690739 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 24690798 Query: 428 tcatgttctcct 439 ||| | |||||| Sbjct: 24690799 tcacgatctcct 24690810 Score = 105 bits (53), Expect = 2e-19 Identities = 136/161 (84%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 607 ctttctgcacagatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggcca 666 ||||||||| | ||||| |||||||| ||||||||||| || | || |||| ||||| Sbjct: 24691509 ctttctgcataattcctcatctgaccaactgtcttcagtgaaagccttatcctttggcca 24691568 Query: 667 gttaggattgttgaacacagcagcacatgaagacactatgacaactcgcttaacttttgg 726 ||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||| | Sbjct: 24691569 gttaggattactgaacacggcagcaatggaagacaccatgacaactcgcttaactttt-g 24691627 Query: 727 cctcgttgcaagccttcaacacatttcagtgtgcctgttac 767 |||| | ||| |||||||||||| || |||||||||||||| Sbjct: 24691628 cctcatggcaggccttcaacaca-ttaagtgtgcctgttac 24691667 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Plus Query: 437 cctttgagatatttgaggagaattttactgctcgcattcactgttggctgcatcaagggg 496 ||||||| ||| || | ||||| |||||| ||||| || ||||| | ||||| ||||| Sbjct: 24691059 cctttgaaatagttaatgagaactttactactcgcgtttactgtagattgcattaagggt 24691118 Query: 497 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 556 |||| ||||||||||| ||||| ||||| |||| ||||||||| |||||||||||| Sbjct: 24691119 ccaatcaccaatgatgggcaaatagttacaatgtccagcccagtttttgctgcataagca 24691178 Query: 557 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcct 602 ||||||||||||||||| |||||| ||||| |||||||||||| Sbjct: 24691179 aaagcctcacgctctgccaccgttttcgaaaggtaataccaatcct 24691224 Score = 77.8 bits (39), Expect = 5e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 122 aggatgccagatgctttgtaggattcgacactgtctccgagggtcttctctacaggcctg 181 ||||||||| |||||||||||||||| || ||||| | |||||| | ||| | ||||||| Sbjct: 24690122 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 24690181 Query: 182 aaggtccaccctagcttctgaagtttctcagaact 216 || |||| || |||||||||||||||||| |||| Sbjct: 24690182 aaactccagccaagcttctgaagtttctcaaaact 24690216 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Plus Query: 367 aagaagagcatcggcaacatcacggacatccac 399 ||||||||||||||||||||| | ||||||||| Sbjct: 24704056 aagaagagcatcggcaacatccctgacatccac 24704088
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0029G06 Length = 169711 Score = 139 bits (70), Expect = 2e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Plus Query: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307 |||||||||||||| || ||||||||||||||||| | ||||||||| | |||||| ||| Sbjct: 24303 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 24362 Query: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367 ||||| | ||| ||||||||||| ||||| ||||| |||||||||||| |||| | Sbjct: 24363 cttattggagctgagctgcagatgtatcgtccggatgc---tggattttcatacgccaaa 24419 Query: 368 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 427 || ||||||| |||||||||||| |||||||||| ||||| || ||||||||| ||||| Sbjct: 24420 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 24479 Query: 428 tcatgttctcct 439 ||| | |||||| Sbjct: 24480 tcacgatctcct 24491 Score = 105 bits (53), Expect = 2e-19 Identities = 136/161 (84%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 607 ctttctgcacagatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggcca 666 ||||||||| | ||||| |||||||| ||||||||||| || | || |||| ||||| Sbjct: 25190 ctttctgcataattcctcatctgaccaactgtcttcagtgaaagccttatcctttggcca 25249 Query: 667 gttaggattgttgaacacagcagcacatgaagacactatgacaactcgcttaacttttgg 726 ||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||| | Sbjct: 25250 gttaggattactgaacacggcagcaatggaagacaccatgacaactcgcttaactttt-g 25308 Query: 727 cctcgttgcaagccttcaacacatttcagtgtgcctgttac 767 |||| | ||| |||||||||||| || |||||||||||||| Sbjct: 25309 cctcatggcaggccttcaacaca-ttaagtgtgcctgttac 25348 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Plus Query: 437 cctttgagatatttgaggagaattttactgctcgcattcactgttggctgcatcaagggg 496 ||||||| ||| || | ||||| |||||| ||||| || ||||| | ||||| ||||| Sbjct: 24740 cctttgaaatagttaatgagaactttactactcgcgtttactgtagattgcattaagggt 24799 Query: 497 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 556 |||| ||||||||||| ||||| ||||| |||| ||||||||| |||||||||||| Sbjct: 24800 ccaatcaccaatgatgggcaaatagttacaatgtccagcccagtttttgctgcataagca 24859 Query: 557 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcct 602 ||||||||||||||||| |||||| ||||| |||||||||||| Sbjct: 24860 aaagcctcacgctctgccaccgttttcgaaaggtaataccaatcct 24905 Score = 77.8 bits (39), Expect = 5e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 122 aggatgccagatgctttgtaggattcgacactgtctccgagggtcttctctacaggcctg 181 ||||||||| |||||||||||||||| || ||||| | |||||| | ||| | ||||||| Sbjct: 23803 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 23862 Query: 182 aaggtccaccctagcttctgaagtttctcagaact 216 || |||| || |||||||||||||||||| |||| Sbjct: 23863 aaactccagccaagcttctgaagtttctcaaaact 23897 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Plus Query: 367 aagaagagcatcggcaacatcacggacatccac 399 ||||||||||||||||||||| | ||||||||| Sbjct: 37737 aagaagagcatcggcaacatccctgacatccac 37769
>gb|AY107063.1| Zea mays PCO100324 mRNA sequence Length = 999 Score = 123 bits (62), Expect = 9e-25 Identities = 343/430 (79%), Gaps = 5/430 (1%) Strand = Plus / Minus Query: 323 ctgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggca 382 ||||||||||| ||||||||||| ||| ||||||| || || |||| | ||| ||| ||| Sbjct: 933 ctgcagatgtatcgtccagatgcttcttgattttcgtaagc-agaacaggag-atcagca 876 Query: 383 acatcacggacatccactagattccagaatctattttctacagtctcatgttctcctttg 442 |||||||| |||||||| | ||| | || ||| ||||| ||||||||| | ||||||||| Sbjct: 875 acatcacgaacatccac-atatttctgagtctgttttcaacagtctcacgatctcctttg 817 Query: 443 agatatttgaggagaattttactgctcgcattcactgttggctgcatcaaggggccaagt 502 | ||| || ||||| | ||||||| ||| ||| ||| | | |||||||||||| |||| | Sbjct: 816 aaataattaaggagtactttactgttcgtatttactatagactgcatcaagggcccaaat 757 Query: 503 acc-aatgatggtagaatagctacaacatccatcccagttttcgctgcataagcaaaagc 561 ||| || || || ||||| |||||||| || ||| | ||| |||||| |||||||||| Sbjct: 756 acccaaggacgggcaaatagttacaacattcagccccgattttgctgcaaaagcaaaagc 697 Query: 562 ctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcacagatc 621 |||||| || | | ||||| ||||| |||||||||||||| ||| ||||| ||| Sbjct: 696 ctcacgttcggatagagttttagaaagataataccaatcctcattcttcctgcaataatc 637 Query: 622 ctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattgttgaa 681 |||||||||||| ||||||| ||| || ||| |||| ||||| ||||| || |||| Sbjct: 636 ctcgtctgaccaagagtcttcatcaaagaccttgtccttaggccaattagggttactgaa 577 Query: 682 cacagcagcacatgaagacactatgacaactcgcttaacttttggcctcgttgcaagcct 741 ||||| | | |||||||| | |||||||||||||||||| ||||| | |||||||| Sbjct: 576 tacagctgaaacagaagacaccaccacaactcgcttaactttt-gcctcatagcaagcct 518 Query: 742 tcaacacatt 751 | |||||||| Sbjct: 517 ttaacacatt 508
>gb|AY103770.1| Zea mays PCO100327 mRNA sequence Length = 1333 Score = 115 bits (58), Expect = 2e-22 Identities = 312/396 (78%), Gaps = 3/396 (0%) Strand = Plus / Minus Query: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307 ||||||||||||| ||| | ||||| | ||||||||| |||||||| | |||||||| | Sbjct: 948 tttttgggataagggtaagacggatacatggtcttcagtatgtttatcatatcagaaatt 889 Query: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367 |||||| || |||||||||||| |||||||| || ||||| ||||| || | |||| Sbjct: 888 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagtcaga 829 Query: 368 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 427 ||||||||||| ||||||||||| | |||||| | ||| | || | |||||| |||||| Sbjct: 828 agaagagcatcagcaacatcacgaatatccaccatattactgagtacattttcaacagtc 769 Query: 428 tcatgttctcctttgagatatttgaggagaattttactgctcgcattcactgttggctgc 487 || | | |||||| |||||| |||| |||| |||||| ||| ||||| |||||| Sbjct: 768 tcgagat---ctttgaaatatttaaggatcatttcgctgctcaaatttactgtaggctgc 712 Query: 488 atcaaggggccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgct 547 |||||||| |||| ||| ||||| || || || |||||| |||| ||| ||||| ||| Sbjct: 711 atcaagggtccaaatactaatgacggacaaacagttacaacgtccagccctgtttttgct 652 Query: 548 gcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccc 607 ||| |||||| ||| || || || | | |||||||||| |||||||||||||| | Sbjct: 651 gcaaaagcaagagcttctcgttccgacagtgttttggaaactaaataccaatcctccttc 592 Query: 608 tttctgcacagatcctcgtctgaccagctgtcttca 643 || ||||| |||||| |||||||||| ||||||| Sbjct: 591 ttcctgcagtaatcctcatctgaccagcagtcttca 556 Score = 103 bits (52), Expect = 8e-19 Identities = 97/112 (86%) Strand = Plus / Minus Query: 102 cctagttggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccga 161 |||||||||||| ||| |||||||||||| |||| ||||||||||| ||| |||| | || Sbjct: 1094 cctagttggatgttcaattcaggatgccaaatgccttgtaggattcaacagtgtcacgga 1035 Query: 162 gggtcttctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 213 ||| | ||||| |||| ||||||||||||| |||||||| ||||||||||| Sbjct: 1034 gggattcctctataggcttgaaggtccaccccagcttctgcagtttctcaga 983 Score = 54.0 bits (27), Expect = 7e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 681 acacagcagcacatgaagacactatgacaactcgcttaacttttggcctcgttgcaagcc 740 ||||||| ||||||||||||| | ||||||||| |||||||| ||||| | ||||||| Sbjct: 519 acacagctccacatgaagacaccaccacaactcgcctaactttt-gcctcatagcaagcc 461 Query: 741 ttcaacacatt 751 || |||||||| Sbjct: 460 tttaacacatt 450
>gb|BT017666.1| Zea mays clone EL01N0441F03.c mRNA sequence Length = 869 Score = 99.6 bits (50), Expect = 1e-17 Identities = 310/396 (78%), Gaps = 3/396 (0%) Strand = Plus / Minus Query: 248 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 307 ||||||||||||| ||| | ||||| | ||||||||| |||||||| | |||||||| | Sbjct: 468 tttttgggataagggtaagacggatacatggtcttcagtatgtttatcatatcagaaatt 409 Query: 308 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 367 |||||| || |||||||||||| |||||||| || ||||| ||||| || | |||| Sbjct: 408 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagtcaga 349 Query: 368 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 427 ||||||||||| ||||||||||| | |||||| | ||| | || | |||||| |||||| Sbjct: 348 agaagagcatcagcaacatcacgaatatccaccatattactgagtacattttcaacagtc 289 Query: 428 tcatgttctcctttgagatatttgaggagaattttactgctcgcattcactgttggctgc 487 || | | |||||| |||||| |||| |||| |||||| ||| ||||| |||||| Sbjct: 288 tcgagat---ctttgaaatatttaaggatcatttcgctgctcaaatttactgtaggctgc 232 Query: 488 atcaaggggccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgct 547 |||||||| |||| ||| ||||| || || || |||||| |||| ||| ||||| || Sbjct: 231 atcaagggtccaaatactaatgacggacaaacagttacaacgtccagccctgtttttgcc 172 Query: 548 gcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccc 607 || |||||| ||| || || || | | |||||||||| |||||||||||||| | Sbjct: 171 ccaaaagcaagagcttctcgttccgacagtgttttggaaactaaataccaatcctccttc 112 Query: 608 tttctgcacagatcctcgtctgaccagctgtcttca 643 || ||||| |||||| |||||||||| ||||||| Sbjct: 111 ttcctgcagtaatcctcatctgaccagcagtcttca 76 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Minus Query: 102 cctagttggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccga 161 |||||||||||| ||| |||||||||||| |||| ||||||||||| ||| || | | || Sbjct: 614 cctagttggatgttcaattcaggatgccaaatgccttgtaggattcaacagtggcacgga 555 Query: 162 gggtcttctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 213 ||| | ||||| ||| |||||| |||||| |||||||| ||||||||||| Sbjct: 554 gggattcctctatagggttgaagggccaccccagcttctgcagtttctcaga 503
>gb|AY111471.1| Zea mays CL42025_1 mRNA sequence Length = 830 Score = 73.8 bits (37), Expect = 8e-10 Identities = 151/191 (79%) Strand = Plus / Plus Query: 497 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 556 |||| |||||||||||| ||||| ||||| || | ||||||||| |||||||||||| Sbjct: 589 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 648 Query: 557 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcac 616 ||||||||| | ||||| ||||| ||||| |||||||| |||||| ||||| Sbjct: 649 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcannnnnnctgcaa 708 Query: 617 agatcctcgtctgaccagctgtcttcagtaaatactttgcccttgggccagttaggattg 676 ||| | ||||||||||| || |||||||| | | |||||| ||||||| |||||| Sbjct: 709 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 768 Query: 677 ttgaacacagc 687 ||||||||||| Sbjct: 769 ttgaacacagc 779 Score = 61.9 bits (31), Expect = 3e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 257 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 316 |||||||||||||||||| ||||||||| ||||||| | |||||| ||| ||||| | Sbjct: 349 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 408 Query: 317 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 376 || |||||||| ||| ||||| ||||||| ||||||| || |||| ||||| ||| Sbjct: 409 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 468 Query: 377 tcggcaacatcacggacatccac 399 | || |||||||| |||||||| Sbjct: 469 ccagcgacatcacgaacatccac 491 Score = 50.1 bits (25), Expect = 0.011 Identities = 79/97 (81%) Strand = Plus / Plus Query: 113 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 172 ||||||||||||||||| ||| ||||| |||||| ||||||| |||||| | ||| Sbjct: 205 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 264 Query: 173 acaggcctgaaggtccaccctagcttctgaagtttct 209 | ||||| ||||||||||||||||| |||| |||| Sbjct: 265 atgggcctagaggtccaccctagcttccgaagcttct 301
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 50.1 bits (25), Expect = 0.011 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 355 ttcatatgccagaagaagagcatcggcaacatcacggacatccac 399 ||||||||| ||||| |||||||| || ||||||||||||||||| Sbjct: 24150 ttcatatgc-agaagtagagcatcagcgacatcacggacatccac 24107 Score = 44.1 bits (22), Expect = 0.67 Identities = 34/38 (89%) Strand = Plus / Minus Query: 359 tatgccagaagaagagcatcggcaacatcacggacatc 396 ||||| ||||| | |||||| ||||||||||||||||| Sbjct: 19433 tatgctagaagtaaagcatcagcaacatcacggacatc 19396
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.011 Identities = 37/41 (90%) Strand = Plus / Plus Query: 176 ggcctgaaggtccaccctagcttctgaagtttctcagaact 216 |||||||||||||| |||||||||| ||| ||||| ||||| Sbjct: 4891701 ggcctgaaggtccaacctagcttctcaagcttctctgaact 4891741 Score = 48.1 bits (24), Expect = 0.043 Identities = 39/44 (88%) Strand = Plus / Plus Query: 530 tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 573 |||||||||||||| || || || ||||||||||||||||||| Sbjct: 4892620 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 4892663 Score = 42.1 bits (21), Expect = 2.7 Identities = 63/77 (81%) Strand = Plus / Plus Query: 322 actgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggc 381 |||||| ||||| ||| ||||| || ||| |||||||| | | ||||| ||||||||| Sbjct: 4891960 actgcatatgtatcgttcagatccccctgagttttcatagactaaaagaatagcatcggc 4892019 Query: 382 aacatcacggacatcca 398 |||||| || ||||||| Sbjct: 4892020 aacatcgcgaacatcca 4892036
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1122_A12 Length = 149011 Score = 50.1 bits (25), Expect = 0.011 Identities = 37/41 (90%) Strand = Plus / Plus Query: 176 ggcctgaaggtccaccctagcttctgaagtttctcagaact 216 |||||||||||||| |||||||||| ||| ||||| ||||| Sbjct: 50955 ggcctgaaggtccaacctagcttctcaagcttctctgaact 50995 Score = 48.1 bits (24), Expect = 0.043 Identities = 39/44 (88%) Strand = Plus / Plus Query: 530 tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 573 |||||||||||||| || || || ||||||||||||||||||| Sbjct: 51874 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 51917 Score = 42.1 bits (21), Expect = 2.7 Identities = 63/77 (81%) Strand = Plus / Plus Query: 322 actgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggc 381 |||||| ||||| ||| ||||| || ||| |||||||| | | ||||| ||||||||| Sbjct: 51214 actgcatatgtatcgttcagatccccctgagttttcatagactaaaagaatagcatcggc 51273 Query: 382 aacatcacggacatcca 398 |||||| || ||||||| Sbjct: 51274 aacatcgcgaacatcca 51290
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056D04 Length = 158118 Score = 50.1 bits (25), Expect = 0.011 Identities = 37/41 (90%) Strand = Plus / Plus Query: 176 ggcctgaaggtccaccctagcttctgaagtttctcagaact 216 |||||||||||||| |||||||||| ||| ||||| ||||| Sbjct: 96495 ggcctgaaggtccaacctagcttctcaagcttctctgaact 96535 Score = 48.1 bits (24), Expect = 0.043 Identities = 39/44 (88%) Strand = Plus / Plus Query: 530 tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 573 |||||||||||||| || || || ||||||||||||||||||| Sbjct: 97414 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 97457 Score = 42.1 bits (21), Expect = 2.7 Identities = 63/77 (81%) Strand = Plus / Plus Query: 322 actgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggc 381 |||||| ||||| ||| ||||| || ||| |||||||| | | ||||| ||||||||| Sbjct: 96754 actgcatatgtatcgttcagatccccctgagttttcatagactaaaagaatagcatcggc 96813 Query: 382 aacatcacggacatcca 398 |||||| || ||||||| Sbjct: 96814 aacatcgcgaacatcca 96830
>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full insert sequence Length = 1232 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Minus Query: 367 aagaagagcatcggcaacatcacggacatccac 399 ||||||||||||||||||||| | ||||||||| Sbjct: 738 aagaagagcatcggcaacatccctgacatccac 706
>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full insert sequence Length = 1737 Score = 50.1 bits (25), Expect = 0.011 Identities = 31/33 (93%) Strand = Plus / Minus Query: 367 aagaagagcatcggcaacatcacggacatccac 399 ||||||||||||||||||||| | ||||||||| Sbjct: 1185 aagaagagcatcggcaacatccctgacatccac 1153
>ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 48.1 bits (24), Expect = 0.043 Identities = 39/44 (88%) Strand = Plus / Minus Query: 530 tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 573 |||||||||||||| || || || ||||||||||||||||||| Sbjct: 590 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 547
>emb|BX883042.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 1/11 Length = 348780 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 335 cgtccagatgcctctggattttc 357 ||||||||||||||||||||||| Sbjct: 73547 cgtccagatgcctctggattttc 73525
>dbj|AK062287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E03, full insert sequence Length = 1272 Score = 44.1 bits (22), Expect = 0.67 Identities = 34/38 (89%) Strand = Plus / Minus Query: 359 tatgccagaagaagagcatcggcaacatcacggacatc 396 ||||| ||||| | |||||| ||||||||||||||||| Sbjct: 808 tatgctagaagtaaagcatcagcaacatcacggacatc 771
>ref|NM_000436.2| Homo sapiens 3-oxoacid CoA transferase 1 (OXCT1), nuclear gene encoding mitochondrial protein, mRNA Length = 3385 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 2700 cattattttccctagttggat 2680
>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17, complete sequence Length = 141598 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 gtttttgggataagtgtatgttgga 271 ||||||||||||||||||| ||||| Sbjct: 103824 gtttttgggataagtgtattttgga 103800
>gb|AC118710.7| Mus musculus chromosome 15, clone RP24-121C9, complete sequence Length = 175437 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 tttctacagtctcatgttctc 437 ||||||||||||||||||||| Sbjct: 53599 tttctacagtctcatgttctc 53619
>gb|BC009001.1| Homo sapiens 3-oxoacid CoA transferase 1, mRNA (cDNA clone MGC:17088 IMAGE:4148643), complete cds Length = 3296 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 2612 cattattttccctagttggat 2592
>emb|AL512283.12| Human DNA sequence from clone RP11-95G17 on chromosome 6 Contains the PKIB gene for protein kinase (cAMP-dependent, catalytic) inhibitor beta (protein kinase, cAMP-dependent, catalytic, inhibitor 2 (PRKACN2)) (similar to FLJ23817). Contains a CpG island, complete sequence Length = 153677 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 atgattgtgtcccagcttatt 48 ||||||||||||||||||||| Sbjct: 145935 atgattgtgtcccagcttatt 145915
>emb|CR860738.1| Pongo pygmaeus mRNA; cDNA DKFZp459B1627 (from clone DKFZp459B1627) Length = 3419 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 2735 cattattttccctagttggat 2715
>dbj|AB029576.2| Homo sapiens OXCT gene for succinyl-CoA:3-ketoacid CoA transferase, complete cds Length = 7694 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 7029 cattattttccctagttggat 7009
>dbj|AK125115.1| Homo sapiens cDNA FLJ43125 fis, clone CTONG3004397 Length = 4133 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 3464 cattattttccctagttggat 3444
>emb|CR611841.1| full-length cDNA clone CS0DL007YO17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1583 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 948 cattattttccctagttggat 928
>gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, complete sequence Length = 186185 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 170725 cattattttccctagttggat 170745
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 gtttttgggataagtgtatgttgga 271 ||||||||||||||||||| ||||| Sbjct: 16463387 gtttttgggataagtgtattttgga 16463363
>gb|AC087902.43| Mus musculus strain C57BL/6J chromosome 15 clone rp23-343o3, complete sequence Length = 220173 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 tttctacagtctcatgttctc 437 ||||||||||||||||||||| Sbjct: 32357 tttctacagtctcatgttctc 32337
>gb|AC011235.4| Homo sapiens BAC clone RP11-295A19 from 2, complete sequence Length = 184042 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 ttctgaagtttctcagaactc 217 ||||||||||||||||||||| Sbjct: 162359 ttctgaagtttctcagaactc 162379
>gb|U62961.1|HSU62961 Human succinyl CoA:3-oxoacid CoA transferase precursor (OXCT) mRNA, complete cds Length = 3337 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cattattttccctagttggat 112 ||||||||||||||||||||| Sbjct: 2655 cattattttccctagttggat 2635 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,288,401 Number of Sequences: 3902068 Number of extensions: 7288401 Number of successful extensions: 134302 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134089 Number of HSP's gapped (non-prelim): 191 length of query: 767 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 744 effective length of database: 17,143,297,704 effective search space: 12754613491776 effective search space used: 12754613491776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)