ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HIS8_LISIN (Q92A83) Histidinol-phosphate aminotransferase (EC 2.... 33 0.88
2HIS8_LISMO (Q8Y5X8) Histidinol-phosphate aminotransferase (EC 2.... 31 3.3
3CRCB_CLOPE (Q8XLL2) Protein crcB homolog 30 9.7
4HIS8_LISMF (Q71Y90) Histidinol-phosphate aminotransferase (EC 2.... 30 9.7

>HIS8_LISIN (Q92A83) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 360

 Score = 33.1 bits (74), Expect = 0.88
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 181 GELTSLRKNISDFYKVSELRVLCLVDCHNLLSLMARVSLD 300
           G  +SLRK ++DFY++ E  ++       L+ L+ RV LD
Sbjct: 64  GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLD 103



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>HIS8_LISMO (Q8Y5X8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 360

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 181 GELTSLRKNISDFYKVSELRVLCLVDCHNLLSLMARVSLD 300
           G  +SLRK +++FY++ E  ++       L+ L+ RV LD
Sbjct: 64  GWASSLRKEVTNFYQLEEEELIFTAGVDELIELLTRVLLD 103



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>CRCB_CLOPE (Q8XLL2) Protein crcB homolog|
          Length = 128

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 481 LKSRFIAEPAKGGTPSGTHKPPLLGNMILGFMRSFSV--LVCSDGASFLLFTNSKNSATC 654
           L S F A+   G  P GT    +LG +++GF+  FS+   + S      L T      T 
Sbjct: 23  LISIFAAKNFGGNFPYGTLIANILGALLIGFIMEFSMDSALISSNMKLFLTTGIMGGLTT 82

Query: 655 WAYFRLACMSLL 690
           ++ F    +S+L
Sbjct: 83  FSTFSYETISML 94



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>HIS8_LISMF (Q71Y90) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 360

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 181 GELTSLRKNISDFYKVSELRVLCLVDCHNLLSLMARVSLD 300
           G  +SLR  ++DFY++ E  ++       L+ L+ RV LD
Sbjct: 64  GWASSLRTVVADFYQLEEEELIFTAGVDELIELLTRVLLD 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,427,363
Number of Sequences: 219361
Number of extensions: 1948843
Number of successful extensions: 5105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5102
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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