>YJH0_YEAST (P40361) Protein YJL070C|
          Length = 888

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 601 WNKMVSEAQRNWKVMSW*VVQTFALMVLAWSYPKLVRHNILSRYSFSLDLPWNP 440
           W K  S+    WK++S+ +     +   A  +PKL + N++S +   LDL +NP
Sbjct: 493 WYKKFSQWLLRWKLVSYNIRWNIQI---ARIFPKLFKENVVSNFQEFLDLIFNP 543

>SYFB_BACTN (Q8AA39) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 820

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -3

Query: 695 HKMDVCGHWGFELETYKLILPSGGLPRLSWLLEQDGFR-SAEKLEGDELVSRADLCPHGI 519
           ++ D C H+G   + Y  ++ +G    L      DGF+     L+ + +V  ++ CPH  
Sbjct: 172 NRADACSHYGVARDLYAYLIQNGKQATLQ-RPSVDGFKVENHDLDIEVVVENSEACPHYA 230

Query: 518 SVVLPQVGTPQYSEPLQ 468
            V +  V   +  E LQ
Sbjct: 231 GVTVKGVTVKESPEWLQ 247

>HXD9_MOUSE (P28357) Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2)|
          Length = 339

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 439 PGSMANPN*NCSGSEYCGVPTWGRTTLIP*GQRSARLTSSSPSNFSALRKPSCSSSQESL 618
           PG + +P    +G  Y   P  G     P    ++  +SSS S+ S+ ++  CS+++ES 
Sbjct: 132 PGPVPSPGGPANGRHYGIKPETGAA---PAPAAASTSSSSSTSSSSSSKRTECSAARESQ 188

Query: 619 GS 624
           GS
Sbjct: 189 GS 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,555,918
Number of Sequences: 219361
Number of extensions: 2156647
Number of successful extensions: 5238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5219
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)